Wall clock time and date at job start Tue Mar 31 2020 11:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46909 * 2 1 4 4 C 1.50699 * 109.47030 * 240.00497 * 2 1 3 5 5 H 1.08009 * 119.99463 * 239.99611 * 4 2 1 6 6 C 1.37871 * 120.00657 * 60.26902 * 4 2 1 7 7 N 1.31523 * 119.99422 * 359.72618 * 6 4 2 8 8 Si 1.86798 * 120.00472 * 179.72759 * 6 4 2 9 9 H 1.48492 * 109.47127 * 89.99971 * 8 6 4 10 10 H 1.48502 * 109.47152 * 210.00227 * 8 6 4 11 11 H 1.48502 * 109.46830 * 329.99897 * 8 6 4 12 12 N 1.46497 * 109.47384 * 119.99788 * 2 1 3 13 13 C 1.34777 * 120.00106 * 275.00419 * 12 2 1 14 14 O 1.21596 * 119.99916 * 359.97438 * 13 12 2 15 15 N 1.34771 * 120.00022 * 180.02562 * 13 12 2 16 16 C 1.40163 * 120.00407 * 174.36127 * 15 13 12 17 17 C 1.38710 * 120.07129 * 335.22320 * 16 15 13 18 18 C 1.38391 * 119.95956 * 179.73887 * 17 16 15 19 19 F 1.35096 * 119.94176 * 180.25223 * 18 17 16 20 20 C 1.38464 * 120.11034 * 0.51604 * 18 17 16 21 21 C 1.38254 * 120.15197 * 359.75725 * 20 18 17 22 22 C 1.38520 * 120.03930 * 359.97438 * 21 20 18 23 23 O 1.36025 * 120.05851 * 179.97438 * 22 21 20 24 24 C 1.42897 * 116.99966 * 0.02562 * 23 22 21 25 25 F 1.39898 * 109.47696 * 300.00399 * 24 23 22 26 26 F 1.39908 * 109.46703 * 60.00635 * 24 23 22 27 27 H 1.09000 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47311 * 299.99542 * 1 2 3 29 29 H 1.09004 * 109.47729 * 60.00056 * 1 2 3 30 30 H 0.97004 * 119.99381 * 179.97438 * 7 6 4 31 31 H 0.96997 * 119.99946 * 94.99541 * 12 2 1 32 32 H 0.97006 * 120.00139 * 354.35794 * 15 13 12 33 33 H 1.08000 * 120.01997 * 359.97438 * 17 16 15 34 34 H 1.08006 * 119.92300 * 179.74722 * 20 18 17 35 35 H 1.08004 * 119.98229 * 179.97438 * 21 20 18 36 36 H 1.09001 * 109.47183 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.7039 -0.2360 -2.4827 7 7 0.9477 0.8333 -2.6033 8 14 2.3328 -1.1121 -4.0080 9 1 1.3568 -2.1531 -4.4187 10 1 2.5017 -0.1298 -5.1088 11 1 3.6402 -1.7498 -3.7088 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8582 1.1617 2.4116 15 7 2.5968 -0.6533 3.4574 16 6 2.8432 0.0697 4.6326 17 6 3.1301 1.4252 4.5675 18 6 3.3676 2.1380 5.7297 19 9 3.6420 3.4593 5.6662 20 6 3.3299 1.4981 6.9570 21 6 3.0499 0.1460 7.0268 22 6 2.8057 -0.5724 5.8679 23 8 2.5308 -1.9028 5.9362 24 6 2.5095 -2.4950 7.2365 25 9 3.7614 -2.3384 7.8409 26 9 1.5326 -1.8687 8.0181 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8900 30 1 0.7169 1.1672 -3.4844 31 1 2.2490 -1.6317 1.1526 32 1 2.7501 -1.6110 3.4361 33 1 3.1644 1.9249 3.6106 34 1 3.5197 2.0565 7.8618 35 1 3.0216 -0.3505 7.9856 36 1 2.2783 -3.5565 7.1486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162803282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:12 Heat of formation + Delta-G solvation = -208.308346 kcal Electronic energy + Delta-G solvation = -26495.267721 eV Core-core repulsion = 21950.366233 eV Total energy + Delta-G solvation = -4544.901488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.26948 -49.94068 -48.25955 -41.94644 -40.51360 -38.35831 -36.92296 -35.77743 -34.37207 -31.68620 -31.02837 -29.83812 -27.33521 -26.99098 -24.89804 -23.60113 -22.92911 -21.67195 -20.29231 -19.85917 -19.69368 -18.84996 -18.67550 -18.05433 -17.44969 -17.18658 -16.75778 -16.67747 -16.54568 -16.20976 -15.80212 -15.52825 -15.23388 -14.92252 -14.81988 -14.64460 -14.58606 -14.50296 -14.39869 -13.82382 -13.58404 -13.11158 -13.03695 -12.98362 -12.81939 -12.69633 -12.48699 -12.27886 -12.12636 -11.65659 -11.11713 -11.09596 -10.61131 -9.94899 -9.73603 -9.00096 -8.17261 -6.34612 -0.04880 0.00140 1.44132 1.47080 1.48539 1.57087 1.62968 2.00280 2.41839 2.49251 2.57099 3.09898 3.14036 3.36074 3.49960 3.61458 3.74155 3.84616 4.05619 4.13548 4.49086 4.69919 4.76667 4.90263 4.92742 5.04513 5.08687 5.26317 5.37490 5.40728 5.58366 5.62857 5.81507 5.91162 6.08177 6.16913 6.72567 7.13461 7.33435 7.57990 8.89304 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.003180 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.955051 B = 8804.014059 C = 9787.125027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.287 3.713 3 H 0.002 0.998 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.708 5.708 13 C 0.693 3.307 14 O -0.619 6.619 15 N -0.665 5.665 16 C 0.183 3.817 17 C -0.162 4.162 18 C 0.086 3.914 19 F -0.143 7.143 20 C -0.130 4.130 21 C -0.135 4.135 22 C 0.065 3.935 23 O -0.323 6.323 24 C 0.408 3.592 25 F -0.205 7.205 26 F -0.208 7.208 27 H 0.042 0.958 28 H 0.011 0.989 29 H 0.067 0.933 30 H 0.266 0.734 31 H 0.405 0.595 32 H 0.426 0.574 33 H 0.139 0.861 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.867 -10.208 22.061 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.184 3.816 3 H 0.020 0.980 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.361 5.361 13 C 0.394 3.606 14 O -0.500 6.500 15 N -0.313 5.313 16 C 0.085 3.915 17 C -0.184 4.184 18 C 0.066 3.934 19 F -0.122 7.122 20 C -0.150 4.150 21 C -0.154 4.154 22 C 0.019 3.981 23 O -0.241 6.241 24 C 0.319 3.681 25 F -0.187 7.187 26 F -0.190 7.190 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.265 0.735 33 H 0.156 0.844 34 H 0.189 0.811 35 H 0.184 0.816 36 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.487 -9.143 21.709 23.979 hybrid contribution 0.310 -0.254 -0.899 0.984 sum 4.798 -9.396 20.810 23.332 Atomic orbital electron populations 1.21927 0.98281 0.99563 0.99567 1.18313 0.90997 0.91807 0.80521 0.98019 1.21514 1.32777 1.13604 0.90527 0.90628 1.25789 0.94882 0.95532 1.02294 1.70062 1.36998 1.23813 1.24662 0.85314 0.78974 0.77974 0.77875 1.19594 1.21396 1.18796 1.45461 1.68447 1.14158 1.08004 1.16217 0.78344 0.84994 0.81070 1.90844 1.58146 1.16296 1.84731 1.42348 1.68323 1.12242 1.08410 1.16560 1.00652 0.90634 0.83646 1.21210 1.03504 0.93889 0.99819 1.17563 1.03396 0.78092 0.94334 1.91477 1.91444 1.32008 1.97290 1.21138 1.02282 0.94752 0.96799 1.21371 1.02080 0.94550 0.97396 1.18380 1.03809 0.83686 0.92271 1.86590 1.85795 1.20193 1.31534 1.24302 0.72262 0.98038 0.73487 1.93089 1.44600 1.96891 1.84109 1.93091 1.63761 1.85952 1.76168 0.93920 0.97032 0.91380 0.92525 0.75912 0.73501 0.84382 0.81088 0.81607 0.74720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.29 14.71 2.56 44.25 0.11 14.83 16 3 H 0.00 0.11 7.58 -2.39 -0.02 0.10 16 4 C -0.55 -28.29 8.72 25.60 0.22 -28.07 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.02 0.81 5.31 84.65 0.45 1.26 16 7 N -0.92 -52.13 11.33 21.45 0.24 -51.88 16 8 Si 0.97 41.31 29.54 68.60 2.03 43.34 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 12 N -0.71 -28.85 5.07 -461.41 -2.34 -31.19 16 13 C 0.69 28.14 8.33 179.06 1.49 29.63 16 14 O -0.62 -30.69 13.17 -4.02 -0.05 -30.74 16 15 N -0.66 -20.27 5.30 -316.81 -1.68 -21.94 16 16 C 0.18 5.52 6.45 38.17 0.25 5.77 16 17 C -0.16 -5.54 8.69 22.42 0.19 -5.35 16 18 C 0.09 2.50 7.29 22.36 0.16 2.67 16 19 F -0.14 -4.41 17.26 44.97 0.78 -3.63 16 20 C -0.13 -2.82 10.02 22.33 0.22 -2.59 16 21 C -0.14 -2.75 8.26 22.34 0.18 -2.57 16 22 C 0.06 1.52 6.50 22.59 0.15 1.67 16 23 O -0.32 -5.64 9.84 -93.84 -0.92 -6.56 16 24 C 0.41 4.06 5.98 113.37 0.68 4.73 16 25 F -0.21 -2.59 15.58 44.97 0.70 -1.88 16 26 F -0.21 -2.89 15.59 44.97 0.70 -2.19 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.07 3.76 6.08 -2.38 -0.01 3.74 16 30 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.41 13.44 8.56 -92.71 -0.79 12.65 16 32 H 0.43 9.77 8.35 -92.70 -0.77 9.00 16 33 H 0.14 5.72 5.79 -2.91 -0.02 5.70 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.17 2.62 5.09 -2.91 -0.01 2.61 16 36 H 0.24 -0.27 8.14 -2.39 -0.02 -0.29 16 Total: -1.00 -70.90 321.36 3.85 -67.06 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.39 Total: 23.75 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 4.78 Total: 15.88 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.78 Total: -105.02 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.98 Total: -37.30 kcal Atomic # 9 Polarization: -9.88 SS G_CDS: 2.18 Total: -7.70 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -70.90 3.85 -67.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162803282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.252 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds