Wall clock time and date at job start Tue Mar 31 2020 11:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99555 * 2 1 4 4 H 1.48501 * 109.47162 * 239.99493 * 3 2 1 5 5 H 1.48496 * 109.47707 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47243 * 119.99854 * 3 2 1 7 7 C 1.37867 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00516 * 173.71387 * 7 2 1 9 9 C 1.50701 * 119.99972 * 353.71211 * 7 2 1 10 10 C 1.52994 * 115.55080 * 86.11086 * 9 7 2 11 11 O 1.45202 * 109.47308 * 65.10566 * 10 9 7 12 12 C 1.34233 * 117.00253 * 180.02562 * 11 10 9 13 13 O 1.20829 * 119.99561 * 359.97438 * 12 11 10 14 14 C 1.50692 * 120.00318 * 180.02562 * 12 11 10 15 15 H 1.09003 * 109.30873 * 334.61109 * 14 12 11 16 16 S 1.81329 * 109.31400 * 94.02909 * 14 12 11 17 17 C 1.82073 * 100.83770 * 166.17672 * 16 14 12 18 18 C 1.52150 * 107.71685 * 295.88685 * 17 16 14 19 19 C 1.50227 * 113.57800 * 52.86380 * 18 17 16 20 20 C 1.39953 * 114.45992 * 159.79658 * 19 18 17 21 21 C 1.37455 * 121.52613 * 178.98857 * 20 19 18 22 22 C 1.38278 * 119.51300 * 0.02562 * 21 20 19 23 23 C 1.37570 * 119.26251 * 0.49822 * 22 21 20 24 24 C 1.36939 * 126.74600 * 339.40251 * 19 18 17 25 25 C 1.53004 * 117.49755 * 231.77870 * 9 7 2 26 26 C 1.53003 * 117.50038 * 300.43687 * 9 7 2 27 27 H 0.97001 * 120.00676 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47152 * 305.10568 * 10 9 7 29 29 H 1.09001 * 109.47538 * 185.10972 * 10 9 7 30 30 H 1.09005 * 109.81147 * 55.44310 * 17 16 14 31 31 H 1.09004 * 109.81407 * 176.27124 * 17 16 14 32 32 H 1.09001 * 108.66270 * 173.92077 * 18 17 16 33 33 H 1.08997 * 108.66350 * 291.80348 * 18 17 16 34 34 H 1.07997 * 119.23150 * 358.97421 * 20 19 18 35 35 H 1.08003 * 120.24094 * 180.02562 * 21 20 19 36 36 H 1.08004 * 120.37131 * 180.32113 * 22 21 20 37 37 H 1.08000 * 119.33109 * 179.76651 * 23 22 21 38 38 H 1.09000 * 117.49537 * 214.99899 * 25 9 7 39 39 H 1.09000 * 117.50211 * 0.02562 * 25 9 7 40 40 H 1.09007 * 117.49544 * 359.97438 * 26 9 7 41 41 H 1.08999 * 117.49506 * 144.96939 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0797 -1.1968 -0.1019 9 6 1.2579 -2.4951 0.1441 10 6 0.7195 -3.0939 -1.1568 11 8 1.8304 -3.4657 -2.0147 12 6 1.5267 -4.0095 -3.2038 13 8 0.3709 -4.1700 -3.5171 14 6 2.6273 -4.4208 -4.1474 15 1 3.5192 -3.8293 -3.9406 16 16 3.0066 -6.1763 -3.8975 17 6 4.0032 -6.5257 -5.3806 18 6 3.1062 -6.3404 -6.5955 19 6 2.4086 -5.0104 -6.6301 20 6 1.9507 -4.6290 -7.8964 21 6 1.2742 -3.4483 -8.0905 22 6 1.0379 -2.6136 -7.0137 23 6 1.4947 -2.9773 -5.7681 24 6 2.1841 -4.1752 -5.5684 25 6 1.7341 -3.4672 1.2253 26 6 0.4252 -2.6957 1.4119 27 1 -0.4851 0.8400 -0.0004 28 1 0.0979 -2.3574 -1.6660 29 1 0.1235 -3.9781 -0.9306 30 1 4.8434 -5.8332 -5.4327 31 1 4.3715 -7.5511 -5.3452 32 1 3.7130 -6.4395 -7.4955 33 1 2.3538 -7.1291 -6.5971 34 1 2.1334 -5.2773 -8.7406 35 1 0.9297 -3.1746 -9.0769 36 1 0.5032 -1.6851 -7.1495 37 1 1.3142 -2.3244 -4.9269 38 1 1.6636 -4.5334 1.0099 39 1 2.5871 -3.1655 1.8332 40 1 0.4178 -1.8867 2.1424 41 1 -0.5064 -3.2539 1.3190 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174730626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:56 Heat of formation + Delta-G solvation = -33.269577 kcal Electronic energy + Delta-G solvation = -24164.041194 eV Core-core repulsion = 20714.879911 eV Total energy + Delta-G solvation = -3449.161283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40780 -39.24973 -36.83168 -35.31129 -34.66019 -32.91723 -31.97649 -29.91700 -28.38427 -26.62713 -25.26855 -24.16403 -22.77130 -21.23049 -20.87768 -20.31457 -19.28273 -17.29782 -16.98194 -16.85132 -16.28540 -15.73780 -15.50229 -15.28528 -15.08786 -14.63667 -14.27000 -13.99868 -13.75209 -13.35166 -13.19524 -12.98006 -12.80830 -12.47946 -12.16825 -11.99019 -11.67725 -11.63078 -11.34967 -11.04432 -10.98498 -10.88385 -10.57206 -10.30128 -10.19734 -10.05049 -9.90324 -9.59013 -8.84992 -8.82861 -8.75094 -8.48363 -8.22626 -7.83708 -6.08729 -4.14267 1.03652 1.28325 1.31092 2.14013 2.86842 3.12286 3.28792 3.33695 3.36363 3.68370 4.22213 4.37291 4.42198 4.53959 4.82998 4.90031 4.96153 5.07143 5.14953 5.16782 5.21254 5.33025 5.42496 5.44911 5.54339 5.59601 5.83945 5.94783 5.95813 6.22389 6.30274 6.33400 6.37110 6.46737 6.49740 6.61289 6.73515 6.87331 7.02385 7.14885 7.34302 7.45000 7.84414 8.26428 8.38693 8.87510 9.51691 11.00547 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.004061 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.806217 B = 6892.685174 C = 7902.276528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.116 3.884 11 O -0.328 6.328 12 C 0.476 3.524 13 O -0.495 6.495 14 C -0.019 4.019 15 H 0.131 0.869 16 S -0.197 6.197 17 C -0.088 4.088 18 C -0.080 4.080 19 C -0.067 4.067 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.090 4.090 24 C -0.067 4.067 25 C -0.204 4.204 26 C -0.143 4.143 27 H 0.262 0.738 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -10.517 -14.916 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.036 3.964 10 C 0.043 3.957 11 O -0.243 6.243 12 C 0.315 3.685 13 O -0.384 6.384 14 C -0.148 4.148 15 H 0.149 0.851 16 S 0.031 5.969 17 C -0.237 4.237 18 C -0.118 4.118 19 C -0.067 4.067 20 C -0.145 4.145 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.109 4.109 24 C -0.069 4.069 25 C -0.241 4.241 26 C -0.181 4.181 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.304 -11.131 -14.075 18.712 hybrid contribution 0.473 1.835 -0.892 2.095 sum 5.778 -9.296 -14.967 18.542 Atomic orbital electron populations 1.69986 1.05897 1.26834 1.49058 1.25004 0.94842 0.99037 0.94481 0.86663 0.79666 0.82939 0.78804 1.20161 1.21260 1.20070 1.20348 0.93078 0.88306 1.51060 0.91892 1.18765 0.99139 0.94254 0.84266 1.22995 0.85214 0.97014 0.90447 1.86536 1.41630 1.70177 1.25962 1.22149 0.88525 0.75539 0.82256 1.90657 1.20997 1.51085 1.75640 1.21689 1.01225 0.98640 0.93236 0.85086 1.87307 1.68618 1.08502 1.32445 1.23399 0.99726 1.06240 0.94288 1.20433 0.98514 0.94902 0.97991 1.19281 0.99450 0.95265 0.92726 1.21239 0.99822 0.97367 0.96040 1.21021 0.98426 0.94574 0.98928 1.21037 0.99927 1.00102 0.92521 1.21383 0.95957 0.95501 0.98056 1.18836 1.00952 0.95689 0.91381 1.23018 0.98528 0.95781 1.06812 1.22539 0.92342 1.01211 1.01980 0.92828 0.90486 0.94098 0.88958 0.86523 0.89594 0.89228 0.86032 0.85807 0.85508 0.85920 0.91463 0.89999 0.89362 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.66 12.88 55.43 0.71 -23.95 16 2 C 0.07 1.88 5.38 -17.83 -0.10 1.79 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.49 -13.29 8.77 -34.44 -0.30 -13.59 16 8 H 0.06 1.71 7.82 -52.48 -0.41 1.30 16 9 C 0.04 0.90 1.62 -155.66 -0.25 0.65 16 10 C 0.12 2.79 5.29 37.15 0.20 2.99 16 11 O -0.33 -7.34 10.16 -39.26 -0.40 -7.74 16 12 C 0.48 9.53 5.65 36.00 0.20 9.73 16 13 O -0.50 -10.94 15.35 -18.75 -0.29 -11.22 16 14 C -0.02 -0.30 3.10 -28.96 -0.09 -0.39 16 15 H 0.13 1.92 8.14 -51.91 -0.42 1.50 16 16 S -0.20 -2.77 21.67 -107.50 -2.33 -5.10 16 17 C -0.09 -0.80 6.57 36.72 0.24 -0.56 16 18 C -0.08 -0.71 5.29 -28.55 -0.15 -0.86 16 19 C -0.07 -0.80 5.74 -104.68 -0.60 -1.41 16 20 C -0.13 -1.34 9.39 -39.22 -0.37 -1.71 16 21 C -0.11 -1.21 10.04 -39.85 -0.40 -1.61 16 22 C -0.12 -1.52 10.06 -39.81 -0.40 -1.92 16 23 C -0.09 -1.39 8.28 -39.30 -0.33 -1.71 16 24 C -0.07 -0.99 5.20 -104.49 -0.54 -1.53 16 25 C -0.20 -4.50 9.96 -26.69 -0.27 -4.76 16 26 C -0.14 -3.34 9.37 -26.69 -0.25 -3.59 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.08 2.01 8.13 -51.93 -0.42 1.59 16 29 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.54 7.97 -51.93 -0.41 0.13 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.12 0.93 7.94 -52.49 -0.42 0.52 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.12 2.11 6.88 -52.49 -0.36 1.75 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.09 2.15 8.14 -51.92 -0.42 1.73 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -30.71 357.04 -11.16 -41.87 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.81 Total: 3.39 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -3.41 Total: -18.50 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.71 Total: -23.95 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.69 Total: -18.97 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.33 Total: -5.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.71 -11.16 -41.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174730626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.597 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds