Wall clock time and date at job start Tue Mar 31 2020 11:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99555 * 2 1 4 4 H 1.48501 * 109.47162 * 239.99493 * 3 2 1 5 5 H 1.48496 * 109.47707 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47243 * 119.99854 * 3 2 1 7 7 C 1.37867 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00516 * 173.71387 * 7 2 1 9 9 C 1.50701 * 119.99972 * 353.71211 * 7 2 1 10 10 C 1.52994 * 115.55080 * 86.11086 * 9 7 2 11 11 O 1.45202 * 109.47308 * 65.10566 * 10 9 7 12 12 C 1.34233 * 117.00253 * 180.02562 * 11 10 9 13 13 O 1.20829 * 119.99561 * 359.97438 * 12 11 10 14 14 C 1.50692 * 120.00318 * 180.02562 * 12 11 10 15 15 H 1.09003 * 109.30873 * 334.61109 * 14 12 11 16 16 S 1.81329 * 109.31400 * 94.02909 * 14 12 11 17 17 C 1.82073 * 100.83770 * 166.17672 * 16 14 12 18 18 C 1.52150 * 107.71685 * 295.88685 * 17 16 14 19 19 C 1.50227 * 113.57800 * 52.86380 * 18 17 16 20 20 C 1.39953 * 114.45992 * 159.79658 * 19 18 17 21 21 C 1.37455 * 121.52613 * 178.98857 * 20 19 18 22 22 C 1.38278 * 119.51300 * 0.02562 * 21 20 19 23 23 C 1.37570 * 119.26251 * 0.49822 * 22 21 20 24 24 C 1.36939 * 126.74600 * 339.40251 * 19 18 17 25 25 C 1.53004 * 117.49755 * 231.77870 * 9 7 2 26 26 C 1.53003 * 117.50038 * 300.43687 * 9 7 2 27 27 H 0.97001 * 120.00676 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47152 * 305.10568 * 10 9 7 29 29 H 1.09001 * 109.47538 * 185.10972 * 10 9 7 30 30 H 1.09005 * 109.81147 * 55.44310 * 17 16 14 31 31 H 1.09004 * 109.81407 * 176.27124 * 17 16 14 32 32 H 1.09001 * 108.66270 * 173.92077 * 18 17 16 33 33 H 1.08997 * 108.66350 * 291.80348 * 18 17 16 34 34 H 1.07997 * 119.23150 * 358.97421 * 20 19 18 35 35 H 1.08003 * 120.24094 * 180.02562 * 21 20 19 36 36 H 1.08004 * 120.37131 * 180.32113 * 22 21 20 37 37 H 1.08000 * 119.33109 * 179.76651 * 23 22 21 38 38 H 1.09000 * 117.49537 * 214.99899 * 25 9 7 39 39 H 1.09000 * 117.50211 * 0.02562 * 25 9 7 40 40 H 1.09007 * 117.49544 * 359.97438 * 26 9 7 41 41 H 1.08999 * 117.49506 * 144.96939 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0797 -1.1968 -0.1019 9 6 1.2579 -2.4951 0.1441 10 6 0.7195 -3.0939 -1.1568 11 8 1.8304 -3.4657 -2.0147 12 6 1.5267 -4.0095 -3.2038 13 8 0.3709 -4.1700 -3.5171 14 6 2.6273 -4.4208 -4.1474 15 1 3.5192 -3.8293 -3.9406 16 16 3.0066 -6.1763 -3.8975 17 6 4.0032 -6.5257 -5.3806 18 6 3.1062 -6.3404 -6.5955 19 6 2.4086 -5.0104 -6.6301 20 6 1.9507 -4.6290 -7.8964 21 6 1.2742 -3.4483 -8.0905 22 6 1.0379 -2.6136 -7.0137 23 6 1.4947 -2.9773 -5.7681 24 6 2.1841 -4.1752 -5.5684 25 6 1.7341 -3.4672 1.2253 26 6 0.4252 -2.6957 1.4119 27 1 -0.4851 0.8400 -0.0004 28 1 0.0979 -2.3574 -1.6660 29 1 0.1235 -3.9781 -0.9306 30 1 4.8434 -5.8332 -5.4327 31 1 4.3715 -7.5511 -5.3452 32 1 3.7130 -6.4395 -7.4955 33 1 2.3538 -7.1291 -6.5971 34 1 2.1334 -5.2773 -8.7406 35 1 0.9297 -3.1746 -9.0769 36 1 0.5032 -1.6851 -7.1495 37 1 1.3142 -2.3244 -4.9269 38 1 1.6636 -4.5334 1.0099 39 1 2.5871 -3.1655 1.8332 40 1 0.4178 -1.8867 2.1424 41 1 -0.5064 -3.2539 1.3190 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174730626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:55 Heat of formation + Delta-G solvation = -47.519567 kcal Electronic energy + Delta-G solvation = -24164.659120 eV Core-core repulsion = 20714.879911 eV Total energy + Delta-G solvation = -3449.779209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85399 -40.44322 -38.65710 -37.09346 -35.47171 -34.08356 -34.00913 -30.80629 -29.66388 -28.32207 -27.27555 -25.08672 -23.83599 -23.03088 -22.05824 -21.54813 -21.24700 -18.90197 -18.55199 -18.06385 -17.77131 -17.04705 -16.93161 -16.56896 -16.36384 -16.11590 -15.72135 -15.34550 -14.92578 -14.70088 -14.33771 -14.16685 -13.98093 -13.85015 -13.65226 -13.54536 -13.10745 -12.96886 -12.84045 -12.54612 -12.44839 -12.27248 -12.14180 -12.06553 -11.78226 -11.71703 -11.45680 -11.05048 -10.83387 -10.52777 -10.14228 -9.81439 -9.66826 -8.91803 -8.16989 -6.28853 -0.07796 0.26816 0.33089 1.21900 1.35634 1.40148 1.40982 1.48918 1.63141 2.39541 2.70075 3.10225 3.12868 3.33979 3.64624 3.70352 3.72967 3.87528 4.00889 4.06310 4.16884 4.22741 4.30976 4.38641 4.46897 4.49482 4.59863 4.66536 4.74436 4.79689 4.88812 4.92985 4.93747 5.09604 5.13451 5.33796 5.41605 5.45181 5.50649 5.51711 5.57718 5.70913 5.97043 6.31304 6.61292 6.76019 7.40049 8.91804 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.004061 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.806217 B = 6892.685174 C = 7902.276528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.003 3.997 10 C 0.130 3.870 11 O -0.340 6.340 12 C 0.474 3.526 13 O -0.523 6.523 14 C -0.010 4.010 15 H 0.132 0.868 16 S -0.242 6.242 17 C -0.070 4.070 18 C -0.080 4.080 19 C -0.069 4.069 20 C -0.119 4.119 21 C -0.107 4.107 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.091 4.091 25 C -0.178 4.178 26 C -0.142 4.142 27 H 0.262 0.738 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.104 0.896 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 -12.338 -17.560 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.002 3.998 10 C 0.056 3.944 11 O -0.256 6.256 12 C 0.316 3.684 13 O -0.413 6.413 14 C -0.139 4.139 15 H 0.150 0.850 16 S -0.014 6.014 17 C -0.218 4.218 18 C -0.118 4.118 19 C -0.070 4.070 20 C -0.137 4.137 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.092 4.092 25 C -0.215 4.215 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.167 0.833 32 H 0.146 0.854 33 H 0.114 0.886 34 H 0.182 0.818 35 H 0.176 0.824 36 H 0.152 0.848 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.173 -12.960 -16.719 22.337 hybrid contribution -0.092 2.324 -0.190 2.334 sum 7.081 -10.635 -16.908 21.193 Atomic orbital electron populations 1.70096 1.07150 1.27471 1.49890 1.25715 0.95602 1.02127 0.94114 0.85709 0.78530 0.79050 0.78992 1.19919 1.20848 1.19138 1.20578 0.92902 0.89743 1.51168 0.92722 1.18872 1.00821 0.94868 0.85192 1.22604 0.85335 0.96168 0.90263 1.86532 1.41070 1.70809 1.27187 1.23023 0.89598 0.74153 0.81666 1.90617 1.22551 1.52151 1.75974 1.21602 0.99280 1.00042 0.92957 0.85021 1.87396 1.70211 1.06838 1.37003 1.23649 0.98930 1.08254 0.90941 1.20559 0.98985 0.92863 0.99401 1.19734 0.98925 0.96002 0.92311 1.21742 0.98014 0.97399 0.96509 1.21439 0.97424 0.94128 0.99488 1.21243 1.00058 1.01138 0.92374 1.21284 0.98688 0.96260 0.98145 1.18894 1.02551 0.96399 0.91364 1.23019 0.97784 0.96317 1.04365 1.22475 0.93555 1.01238 1.00696 0.92908 0.93969 0.93497 0.87713 0.83286 0.85363 0.88562 0.81830 0.82408 0.84835 0.89746 0.89371 0.89371 0.90865 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.63 12.88 21.44 0.28 -52.35 16 2 C 0.02 1.39 5.38 84.65 0.46 1.84 16 3 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.51 -28.33 8.77 25.60 0.22 -28.10 16 8 H 0.05 3.06 7.82 -2.91 -0.02 3.04 16 9 C 0.00 0.15 1.62 -52.93 -0.09 0.06 16 10 C 0.13 6.58 5.29 71.98 0.38 6.96 16 11 O -0.34 -16.17 10.16 -51.44 -0.52 -16.70 16 12 C 0.47 20.22 5.65 71.23 0.40 20.63 16 13 O -0.52 -24.72 15.35 21.96 0.34 -24.38 16 14 C -0.01 -0.33 3.10 29.15 0.09 -0.24 16 15 H 0.13 4.10 8.14 -2.40 -0.02 4.08 16 16 S -0.24 -6.63 21.67 -56.49 -1.22 -7.85 16 17 C -0.07 -1.02 6.57 71.70 0.47 -0.54 16 18 C -0.08 -1.06 5.29 29.42 0.16 -0.90 16 19 C -0.07 -1.48 5.74 -19.90 -0.11 -1.60 16 20 C -0.12 -2.03 9.39 22.50 0.21 -1.82 16 21 C -0.11 -2.03 10.04 22.09 0.22 -1.81 16 22 C -0.13 -3.38 10.06 22.12 0.22 -3.16 16 23 C -0.12 -4.08 8.28 22.45 0.19 -3.90 16 24 C -0.09 -2.70 5.20 -19.78 -0.10 -2.80 16 25 C -0.18 -7.80 9.96 30.62 0.30 -7.50 16 26 C -0.14 -6.75 9.37 30.62 0.29 -6.46 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.04 2.38 8.13 -2.39 -0.02 2.36 16 29 H 0.05 2.25 8.09 -2.39 -0.02 2.24 16 30 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.13 0.74 7.97 -2.39 -0.02 0.72 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.16 1.44 7.94 -2.91 -0.02 1.42 16 35 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 37 H 0.08 3.29 6.88 -2.91 -0.02 3.27 16 38 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.09 3.74 8.14 -2.39 -0.02 3.72 16 40 H 0.07 3.66 8.14 -2.38 -0.02 3.64 16 41 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -71.08 357.04 5.23 -65.85 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.02 Total: 18.98 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 3.31 Total: -29.35 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.28 Total: -52.35 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.19 Total: -41.08 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -6.63 SS G_CDS: -1.22 Total: -7.85 kcal Total: -71.08 5.23 -65.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174730626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.332 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds