Wall clock time and date at job start Tue Mar 31 2020 11:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48504 * 109.47375 * 273.93758 * 3 2 1 5 5 H 1.48500 * 109.46871 * 33.93673 * 3 2 1 6 6 H 1.48496 * 109.47009 * 153.93818 * 3 2 1 7 7 C 1.37875 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99827 * 354.27075 * 7 2 1 9 9 C 1.50694 * 120.00092 * 174.54727 * 7 2 1 10 10 C 1.53007 * 115.54963 * 295.71575 * 9 7 2 11 11 O 1.45192 * 109.47234 * 295.32498 * 10 9 7 12 12 C 1.34232 * 116.99991 * 184.21047 * 11 10 9 13 13 O 1.20823 * 119.99787 * 5.34770 * 12 11 10 14 14 C 1.50695 * 119.99941 * 185.35593 * 12 11 10 15 15 H 1.09002 * 109.31505 * 24.80685 * 14 12 11 16 16 S 1.81338 * 109.30877 * 265.38550 * 14 12 11 17 17 C 1.82062 * 100.84933 * 193.71819 * 16 14 12 18 18 C 1.52150 * 107.74714 * 63.99284 * 17 16 14 19 19 C 1.50229 * 113.58238 * 307.03910 * 18 17 16 20 20 C 1.39939 * 114.47216 * 200.12634 * 19 18 17 21 21 C 1.37459 * 121.51471 * 181.83757 * 20 19 18 22 22 C 1.38287 * 119.51429 * 359.94724 * 21 20 19 23 23 C 1.37570 * 119.26243 * 359.57833 * 22 21 20 24 24 C 1.36944 * 126.71603 * 21.21216 * 19 18 17 25 25 C 1.53004 * 117.50040 * 150.04819 * 9 7 2 26 26 C 1.53001 * 117.49855 * 81.38880 * 9 7 2 27 27 H 0.97000 * 119.99776 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46607 * 55.33292 * 10 9 7 29 29 H 1.08999 * 109.46584 * 175.32498 * 10 9 7 30 30 H 1.09004 * 109.80956 * 304.43436 * 17 16 14 31 31 H 1.09000 * 109.80673 * 183.55392 * 17 16 14 32 32 H 1.09003 * 108.66181 * 185.98064 * 18 17 16 33 33 H 1.09002 * 108.55024 * 68.02597 * 18 17 16 34 34 H 1.08002 * 119.24315 * 1.83679 * 20 19 18 35 35 H 1.07997 * 120.24108 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.36841 * 179.55690 * 22 21 20 37 37 H 1.08003 * 119.33246 * 180.12652 * 23 22 21 38 38 H 1.09000 * 117.49655 * 359.97438 * 25 9 7 39 39 H 1.09001 * 117.50233 * 145.01705 * 25 9 7 40 40 H 1.08998 * 117.49789 * 214.97600 * 26 9 7 41 41 H 1.09000 * 117.49872 * 359.97385 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4135 2.0946 -1.3968 5 1 1.4907 2.6272 0.7816 6 1 3.5859 1.4176 0.6151 7 6 2.0047 -1.1940 -0.0005 8 1 1.4687 -2.1270 0.0924 9 6 3.5065 -1.1969 -0.1245 10 6 4.0606 -0.6584 -1.4452 11 8 3.6485 -1.5271 -2.5331 12 6 4.1261 -1.2421 -3.7548 13 8 4.9388 -0.3591 -3.8949 14 6 3.6485 -2.0235 -4.9516 15 1 2.6606 -2.4343 -4.7431 16 16 4.8018 -3.3842 -5.2785 17 6 4.2750 -3.8864 -6.9473 18 6 4.5403 -2.7203 -7.8879 19 6 3.9358 -1.4252 -7.4250 20 6 3.7723 -0.4687 -8.4333 21 6 3.2672 0.7809 -8.1631 22 6 2.9096 1.1056 -6.8674 23 6 3.0586 0.1665 -5.8732 24 6 3.5653 -1.1056 -6.1460 25 6 4.2687 -2.3409 0.5472 26 6 4.3205 -0.9321 1.1436 27 1 -0.4850 0.8401 0.0004 28 1 3.6763 0.3470 -1.6173 29 1 5.1491 -0.6279 -1.3969 30 1 3.2110 -4.1229 -6.9433 31 1 4.8464 -4.7573 -7.2685 32 1 4.1332 -2.9641 -8.8692 33 1 5.6183 -2.5884 -7.9814 34 1 4.0494 -0.7179 -9.4469 35 1 3.1500 1.5035 -8.9571 36 1 2.5180 2.0858 -6.6384 37 1 2.7778 0.4183 -4.8612 38 1 3.6838 -3.0913 1.0792 39 1 5.1650 -2.7097 0.0485 40 1 5.2511 -0.3746 1.0370 41 1 3.7698 -0.7554 2.0674 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174730641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:58 Heat of formation + Delta-G solvation = -27.375687 kcal Electronic energy + Delta-G solvation = -24387.595770 eV Core-core repulsion = 20938.690065 eV Total energy + Delta-G solvation = -3448.905705 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52709 -39.36059 -37.15565 -35.51077 -34.68353 -32.96986 -32.17080 -29.94697 -28.51075 -27.05227 -25.28379 -24.19046 -22.82722 -21.65372 -20.95640 -20.43273 -19.20056 -17.47255 -17.10738 -16.93152 -16.48443 -15.92492 -15.55133 -15.44160 -15.19502 -14.81775 -14.30050 -13.93243 -13.83278 -13.37309 -13.22811 -13.01217 -12.84877 -12.62434 -12.56615 -12.23517 -12.05902 -11.71285 -11.39258 -11.11728 -11.07624 -10.94348 -10.64544 -10.42472 -10.21093 -10.08217 -10.02434 -9.56942 -9.10580 -8.86145 -8.78054 -8.71502 -8.52590 -7.85900 -6.15705 -4.15885 0.99813 1.25298 1.27419 2.10887 2.68626 3.01415 3.20660 3.32621 3.37287 3.64115 4.18489 4.35122 4.40179 4.51613 4.70570 4.83467 4.88479 4.96165 5.08104 5.12641 5.15272 5.24792 5.30881 5.42218 5.50202 5.57832 5.60262 5.79963 5.82491 5.91285 5.93024 6.10446 6.27334 6.30621 6.34568 6.43542 6.45569 6.62647 6.78674 6.84552 7.02554 7.08481 7.66049 8.10797 8.46056 8.88577 9.46544 10.96111 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.004523 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.264997 B = 6189.436687 C = 7235.744313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.079 3.921 3 Si 0.858 3.142 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.249 1.249 7 C -0.476 4.476 8 H 0.081 0.919 9 C -0.009 4.009 10 C 0.106 3.894 11 O -0.317 6.317 12 C 0.477 3.523 13 O -0.496 6.496 14 C -0.019 4.019 15 H 0.135 0.865 16 S -0.196 6.196 17 C -0.088 4.088 18 C -0.080 4.080 19 C -0.066 4.066 20 C -0.126 4.126 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.091 4.091 24 C -0.067 4.067 25 C -0.174 4.174 26 C -0.181 4.181 27 H 0.265 0.735 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.811 -3.644 -17.269 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.123 4.123 3 Si 0.685 3.315 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.173 1.173 7 C -0.514 4.514 8 H 0.099 0.901 9 C -0.010 4.010 10 C 0.033 3.967 11 O -0.232 6.232 12 C 0.317 3.683 13 O -0.385 6.385 14 C -0.148 4.148 15 H 0.153 0.847 16 S 0.032 5.968 17 C -0.237 4.237 18 C -0.118 4.118 19 C -0.066 4.066 20 C -0.144 4.144 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.110 4.110 24 C -0.069 4.069 25 C -0.211 4.211 26 C -0.219 4.219 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.722 -3.731 -16.570 19.093 hybrid contribution -0.569 1.703 -0.635 1.905 sum 8.153 -2.028 -17.205 19.147 Atomic orbital electron populations 1.69891 1.06192 1.27049 1.49853 1.24913 0.94559 0.98756 0.94092 0.87164 0.81755 0.84146 0.78387 1.20614 1.21335 1.17287 1.20234 0.86308 0.94726 1.50082 0.90114 1.19322 0.95273 0.99689 0.86745 1.23045 0.97143 0.92041 0.84459 1.86598 1.66657 1.54425 1.15520 1.22254 0.79395 0.81952 0.84709 1.90650 1.31022 1.30713 1.86106 1.21688 1.03944 0.96735 0.92453 0.84731 1.87276 1.48280 1.39332 1.21870 1.23408 1.05542 1.00990 0.93715 1.20444 1.02127 0.90439 0.98834 1.19277 0.98927 0.96449 0.91976 1.21245 1.00963 0.93626 0.98542 1.21026 0.98558 0.96526 0.96763 1.21035 1.00158 0.99449 0.92925 1.21361 0.97211 0.92513 0.99943 1.18818 1.01639 0.94678 0.91727 1.22793 1.01502 0.91776 1.05035 1.23094 1.00921 0.98804 0.99083 0.92501 0.92097 0.92853 0.88841 0.86459 0.89508 0.89208 0.85951 0.85749 0.85525 0.86152 0.89231 0.90732 0.91062 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.86 21.13 24.89 -169.99 -4.23 16.90 16 4 H -0.28 -6.88 7.03 56.52 0.40 -6.48 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.25 -5.75 5.80 56.52 0.33 -5.42 16 7 C -0.48 -13.17 9.33 -34.44 -0.32 -13.49 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C -0.01 -0.22 1.07 -155.66 -0.17 -0.38 16 10 C 0.11 2.42 4.99 37.16 0.19 2.60 16 11 O -0.32 -7.03 10.15 -39.26 -0.40 -7.43 16 12 C 0.48 9.46 5.62 36.00 0.20 9.66 16 13 O -0.50 -10.64 15.25 -18.75 -0.29 -10.92 16 14 C -0.02 -0.31 3.10 -28.96 -0.09 -0.40 16 15 H 0.13 2.04 8.14 -51.91 -0.42 1.62 16 16 S -0.20 -2.74 21.67 -107.50 -2.33 -5.06 16 17 C -0.09 -0.80 6.57 36.72 0.24 -0.56 16 18 C -0.08 -0.71 5.29 -28.54 -0.15 -0.86 16 19 C -0.07 -0.79 5.74 -104.68 -0.60 -1.39 16 20 C -0.13 -1.33 9.39 -39.23 -0.37 -1.69 16 21 C -0.11 -1.21 10.05 -39.85 -0.40 -1.61 16 22 C -0.12 -1.54 10.07 -39.81 -0.40 -1.94 16 23 C -0.09 -1.43 8.28 -39.31 -0.33 -1.76 16 24 C -0.07 -1.00 5.22 -104.49 -0.55 -1.55 16 25 C -0.17 -3.55 9.96 -26.69 -0.27 -3.82 16 26 C -0.18 -3.78 8.16 -26.69 -0.22 -4.00 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.06 1.45 4.90 -51.93 -0.25 1.20 16 29 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.54 7.97 -51.93 -0.41 0.13 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.12 0.93 7.94 -52.49 -0.42 0.51 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.12 2.12 6.83 -52.48 -0.36 1.76 16 38 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -31.97 347.35 -10.28 -42.25 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.72 Total: 4.00 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -3.32 Total: -19.04 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.93 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.68 Total: -18.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.23 Total: 16.90 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.33 Total: -5.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.97 -10.28 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174730641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.870 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds