Wall clock time and date at job start Tue Mar 31 2020 11:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48504 * 109.47375 * 273.93758 * 3 2 1 5 5 H 1.48500 * 109.46871 * 33.93673 * 3 2 1 6 6 H 1.48496 * 109.47009 * 153.93818 * 3 2 1 7 7 C 1.37875 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99827 * 354.27075 * 7 2 1 9 9 C 1.50694 * 120.00092 * 174.54727 * 7 2 1 10 10 C 1.53007 * 115.54963 * 295.71575 * 9 7 2 11 11 O 1.45192 * 109.47234 * 295.32498 * 10 9 7 12 12 C 1.34232 * 116.99991 * 184.21047 * 11 10 9 13 13 O 1.20823 * 119.99787 * 5.34770 * 12 11 10 14 14 C 1.50695 * 119.99941 * 185.35593 * 12 11 10 15 15 H 1.09002 * 109.31505 * 24.80685 * 14 12 11 16 16 S 1.81338 * 109.30877 * 265.38550 * 14 12 11 17 17 C 1.82062 * 100.84933 * 193.71819 * 16 14 12 18 18 C 1.52150 * 107.74714 * 63.99284 * 17 16 14 19 19 C 1.50229 * 113.58238 * 307.03910 * 18 17 16 20 20 C 1.39939 * 114.47216 * 200.12634 * 19 18 17 21 21 C 1.37459 * 121.51471 * 181.83757 * 20 19 18 22 22 C 1.38287 * 119.51429 * 359.94724 * 21 20 19 23 23 C 1.37570 * 119.26243 * 359.57833 * 22 21 20 24 24 C 1.36944 * 126.71603 * 21.21216 * 19 18 17 25 25 C 1.53004 * 117.50040 * 150.04819 * 9 7 2 26 26 C 1.53001 * 117.49855 * 81.38880 * 9 7 2 27 27 H 0.97000 * 119.99776 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46607 * 55.33292 * 10 9 7 29 29 H 1.08999 * 109.46584 * 175.32498 * 10 9 7 30 30 H 1.09004 * 109.80956 * 304.43436 * 17 16 14 31 31 H 1.09000 * 109.80673 * 183.55392 * 17 16 14 32 32 H 1.09003 * 108.66181 * 185.98064 * 18 17 16 33 33 H 1.09002 * 108.55024 * 68.02597 * 18 17 16 34 34 H 1.08002 * 119.24315 * 1.83679 * 20 19 18 35 35 H 1.07997 * 120.24108 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.36841 * 179.55690 * 22 21 20 37 37 H 1.08003 * 119.33246 * 180.12652 * 23 22 21 38 38 H 1.09000 * 117.49655 * 359.97438 * 25 9 7 39 39 H 1.09001 * 117.50233 * 145.01705 * 25 9 7 40 40 H 1.08998 * 117.49789 * 214.97600 * 26 9 7 41 41 H 1.09000 * 117.49872 * 359.97385 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4135 2.0946 -1.3968 5 1 1.4907 2.6272 0.7816 6 1 3.5859 1.4176 0.6151 7 6 2.0047 -1.1940 -0.0005 8 1 1.4687 -2.1270 0.0924 9 6 3.5065 -1.1969 -0.1245 10 6 4.0606 -0.6584 -1.4452 11 8 3.6485 -1.5271 -2.5331 12 6 4.1261 -1.2421 -3.7548 13 8 4.9388 -0.3591 -3.8949 14 6 3.6485 -2.0235 -4.9516 15 1 2.6606 -2.4343 -4.7431 16 16 4.8018 -3.3842 -5.2785 17 6 4.2750 -3.8864 -6.9473 18 6 4.5403 -2.7203 -7.8879 19 6 3.9358 -1.4252 -7.4250 20 6 3.7723 -0.4687 -8.4333 21 6 3.2672 0.7809 -8.1631 22 6 2.9096 1.1056 -6.8674 23 6 3.0586 0.1665 -5.8732 24 6 3.5653 -1.1056 -6.1460 25 6 4.2687 -2.3409 0.5472 26 6 4.3205 -0.9321 1.1436 27 1 -0.4850 0.8401 0.0004 28 1 3.6763 0.3470 -1.6173 29 1 5.1491 -0.6279 -1.3969 30 1 3.2110 -4.1229 -6.9433 31 1 4.8464 -4.7573 -7.2685 32 1 4.1332 -2.9641 -8.8692 33 1 5.6183 -2.5884 -7.9814 34 1 4.0494 -0.7179 -9.4469 35 1 3.1500 1.5035 -8.9571 36 1 2.5180 2.0858 -6.6384 37 1 2.7778 0.4183 -4.8612 38 1 3.6838 -3.0913 1.0792 39 1 5.1650 -2.7097 0.0485 40 1 5.2511 -0.3746 1.0370 41 1 3.7698 -0.7554 2.0674 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174730641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:58 Heat of formation + Delta-G solvation = -44.506618 kcal Electronic energy + Delta-G solvation = -24388.338623 eV Core-core repulsion = 20938.690065 eV Total energy + Delta-G solvation = -3449.648557 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95694 -40.50665 -38.87688 -37.20116 -35.49553 -34.34085 -34.06964 -30.84077 -29.81559 -28.63826 -27.27376 -25.11565 -23.89451 -23.29842 -22.13234 -21.59127 -21.12424 -19.07160 -18.75885 -18.18361 -17.87829 -17.29899 -16.99829 -16.62155 -16.39198 -16.12751 -15.61604 -15.38204 -14.98888 -14.78210 -14.62206 -14.28750 -14.20481 -14.05507 -13.86684 -13.61576 -13.15473 -13.06211 -12.92357 -12.56635 -12.36291 -12.30375 -12.19951 -12.07872 -11.81706 -11.70030 -11.48414 -11.08320 -11.05843 -10.69367 -10.46233 -9.84719 -9.69765 -8.93025 -8.35984 -6.39690 -0.10960 0.22903 0.29951 1.15236 1.22342 1.25855 1.29057 1.39628 1.57653 2.26879 2.66294 2.90265 3.07330 3.19495 3.55916 3.66698 3.70366 3.85085 3.86021 3.96678 4.02956 4.14258 4.17047 4.21194 4.34442 4.43841 4.46964 4.55174 4.65580 4.76636 4.83089 4.86825 4.89234 4.90746 5.07207 5.12239 5.33515 5.39237 5.43151 5.44642 5.48012 5.60493 5.94109 6.24454 6.50853 6.65234 7.25892 8.79677 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.004523 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.264997 B = 6189.436687 C = 7235.744313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.028 3.972 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.284 1.284 6 H -0.219 1.219 7 C -0.475 4.475 8 H 0.037 0.963 9 C -0.045 4.045 10 C 0.110 3.890 11 O -0.338 6.338 12 C 0.476 3.524 13 O -0.518 6.518 14 C -0.014 4.014 15 H 0.127 0.873 16 S -0.236 6.236 17 C -0.072 4.072 18 C -0.080 4.080 19 C -0.068 4.068 20 C -0.117 4.117 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.091 4.091 25 C -0.157 4.157 26 C -0.165 4.165 27 H 0.266 0.734 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.323 -4.020 -20.337 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.170 4.170 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.210 1.210 6 H -0.141 1.141 7 C -0.513 4.513 8 H 0.055 0.945 9 C -0.045 4.045 10 C 0.036 3.964 11 O -0.254 6.254 12 C 0.317 3.683 13 O -0.407 6.407 14 C -0.143 4.143 15 H 0.145 0.855 16 S -0.009 6.009 17 C -0.220 4.220 18 C -0.118 4.118 19 C -0.069 4.069 20 C -0.135 4.135 21 C -0.124 4.124 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.092 4.092 25 C -0.194 4.194 26 C -0.202 4.202 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.168 0.832 32 H 0.147 0.853 33 H 0.117 0.883 34 H 0.183 0.817 35 H 0.177 0.823 36 H 0.151 0.849 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.252 -4.125 -19.629 22.999 hybrid contribution -1.379 1.702 0.197 2.199 sum 9.874 -2.423 -19.432 21.931 Atomic orbital electron populations 1.70023 1.07969 1.27963 1.52099 1.25648 0.95164 1.02227 0.93952 0.86280 0.81936 0.79869 0.78153 1.21325 1.21006 1.14127 1.20345 0.88908 0.92976 1.49074 0.94464 1.19241 0.93145 1.03681 0.88478 1.22889 0.97957 0.91186 0.84322 1.86604 1.67398 1.54743 1.16616 1.22995 0.78690 0.81849 0.84756 1.90605 1.32158 1.31664 1.86297 1.21615 1.03836 0.97442 0.91414 0.85498 1.87324 1.48194 1.38342 1.26997 1.23660 1.06546 1.02209 0.89550 1.20571 1.02604 0.88395 1.00194 1.19737 0.97711 0.98559 0.90844 1.21756 0.99046 0.92719 0.99980 1.21446 0.97042 0.97649 0.96222 1.21242 1.00524 0.99296 0.93757 1.21265 1.00022 0.94387 0.98968 1.18883 1.03606 0.94092 0.92632 1.22856 1.01422 0.91439 1.03663 1.23151 1.00985 0.99097 0.96980 0.92452 0.93897 0.90938 0.87941 0.83165 0.85338 0.88322 0.81673 0.82296 0.84879 0.90073 0.89450 0.88258 0.88169 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.16 13.96 21.45 0.30 -58.87 16 2 C 0.03 1.66 5.47 84.65 0.46 2.12 16 3 Si 0.91 44.69 24.89 68.60 1.71 46.40 16 4 H -0.29 -14.23 7.03 99.48 0.70 -13.53 16 5 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.22 -9.55 5.80 99.48 0.58 -8.97 16 7 C -0.48 -27.46 9.33 25.60 0.24 -27.23 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 9 C -0.04 -2.11 1.07 -52.93 -0.06 -2.16 16 10 C 0.11 5.06 4.99 71.98 0.36 5.42 16 11 O -0.34 -15.71 10.15 -51.43 -0.52 -16.23 16 12 C 0.48 19.81 5.62 71.23 0.40 20.22 16 13 O -0.52 -23.12 15.25 21.97 0.34 -22.78 16 14 C -0.01 -0.48 3.10 29.15 0.09 -0.39 16 15 H 0.13 4.20 8.14 -2.40 -0.02 4.18 16 16 S -0.24 -6.44 21.67 -56.49 -1.22 -7.66 16 17 C -0.07 -1.07 6.57 71.70 0.47 -0.59 16 18 C -0.08 -1.05 5.29 29.42 0.16 -0.89 16 19 C -0.07 -1.46 5.74 -19.90 -0.11 -1.57 16 20 C -0.12 -1.99 9.39 22.50 0.21 -1.78 16 21 C -0.11 -2.01 10.05 22.10 0.22 -1.79 16 22 C -0.13 -3.41 10.07 22.12 0.22 -3.19 16 23 C -0.13 -4.22 8.28 22.45 0.19 -4.04 16 24 C -0.09 -2.73 5.22 -19.78 -0.10 -2.83 16 25 C -0.16 -6.22 9.96 30.62 0.30 -5.92 16 26 C -0.16 -6.53 8.16 30.62 0.25 -6.28 16 27 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 28 H 0.04 2.10 4.90 -2.39 -0.01 2.08 16 29 H 0.07 3.01 7.94 -2.39 -0.02 2.99 16 30 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.13 0.75 7.97 -2.39 -0.02 0.73 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.17 1.41 7.94 -2.91 -0.02 1.39 16 35 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.08 3.22 6.83 -2.91 -0.02 3.20 16 38 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 Total: -1.00 -75.59 347.35 4.79 -70.80 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.89 Total: 19.24 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 3.30 Total: -30.90 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.30 Total: -58.87 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.19 Total: -39.01 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.71 Total: 46.40 kcal Atomic # 16 Polarization: -6.44 SS G_CDS: -1.22 Total: -7.66 kcal Total: -75.59 4.79 -70.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174730641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.295 kcal (2) G-P(sol) polarization free energy of solvation -75.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds