Wall clock time and date at job start Tue Mar 31 2020 11:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00288 * 2 1 4 4 C 1.50699 * 109.46865 * 270.00128 * 3 2 1 5 5 H 1.07995 * 120.00269 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99995 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99725 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00252 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46671 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47162 * 119.99834 * 8 6 4 11 11 H 1.48497 * 109.46624 * 239.99831 * 8 6 4 12 12 C 1.34776 * 120.00089 * 179.97438 * 2 1 3 13 13 O 1.21584 * 120.00014 * 179.97438 * 12 2 1 14 14 N 1.34776 * 119.99668 * 0.02562 * 12 2 1 15 15 C 1.39941 * 119.99700 * 184.58272 * 14 12 2 16 16 C 1.38927 * 120.04228 * 144.88235 * 15 14 12 17 17 C 1.38118 * 120.04069 * 180.02562 * 16 15 14 18 18 C 1.38217 * 120.12756 * 359.71965 * 17 16 15 19 19 C 1.38762 * 120.07625 * 0.55418 * 18 17 16 20 20 O 1.35906 * 120.01653 * 179.71715 * 19 18 17 21 21 C 1.42892 * 116.99881 * 359.72733 * 20 19 18 22 22 F 1.39908 * 109.47343 * 60.00324 * 21 20 19 23 23 F 1.39903 * 109.47127 * 179.97438 * 21 20 19 24 24 F 1.39897 * 109.47651 * 299.99942 * 21 20 19 25 25 C 1.38626 * 119.96429 * 359.44924 * 19 18 17 26 26 H 1.09004 * 109.47252 * 270.00244 * 1 2 3 27 27 H 1.09002 * 109.46884 * 30.00155 * 1 2 3 28 28 H 1.08998 * 109.47540 * 150.00056 * 1 2 3 29 29 H 1.08999 * 109.47060 * 29.99693 * 3 2 1 30 30 H 1.08997 * 109.47405 * 149.99765 * 3 2 1 31 31 H 0.97004 * 119.99792 * 179.97438 * 7 6 4 32 32 H 0.96992 * 120.00302 * 4.58089 * 14 12 2 33 33 H 1.07997 * 119.97511 * 359.97438 * 16 15 14 34 34 H 1.08003 * 119.93666 * 179.97438 * 17 16 15 35 35 H 1.07995 * 119.95787 * 180.27333 * 18 17 16 36 36 H 1.08000 * 120.06397 * 180.24934 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6185 -0.6732 8 14 3.4368 3.4175 -3.4340 9 1 2.8598 2.4169 -4.3673 10 1 2.7988 4.7380 -3.6670 11 1 4.8992 3.5262 -3.6676 12 6 2.1389 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0001 14 7 1.4649 -2.3344 0.0005 15 6 2.1612 -3.5443 0.0979 16 6 1.6087 -4.6105 0.7964 17 6 2.2962 -5.8046 0.8929 18 6 3.5323 -5.9440 0.2905 19 6 4.0916 -4.8805 -0.4036 20 8 5.3097 -5.0171 -0.9905 21 6 5.9605 -6.2812 -0.8478 22 9 5.1598 -7.2836 -1.4059 23 9 7.1934 -6.2482 -1.5082 24 9 6.1652 -6.5498 0.5098 25 6 3.4046 -3.6805 -0.5026 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 4.0294 4.4445 -0.8505 32 1 0.4974 -2.3357 -0.0669 33 1 0.6413 -4.5054 1.2648 34 1 1.8652 -6.6322 1.4366 35 1 4.0655 -6.8802 0.3640 36 1 3.8366 -2.8530 -1.0459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176547850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:14 Heat of formation + Delta-G solvation = -179.989548 kcal Electronic energy + Delta-G solvation = -26488.751672 eV Core-core repulsion = 21945.078179 eV Total energy + Delta-G solvation = -4543.673493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.56774 -48.28302 -48.16079 -40.64466 -39.58171 -37.66208 -35.05871 -34.33376 -32.58050 -30.65761 -29.49950 -27.70341 -26.13038 -25.83481 -23.62340 -22.87494 -22.14440 -19.92557 -19.64368 -19.27939 -18.97108 -17.78096 -16.89638 -16.60627 -16.39720 -15.66684 -15.40028 -15.23675 -14.93015 -14.83223 -14.63493 -14.60260 -14.52080 -14.34814 -14.25831 -13.86140 -13.73718 -13.30614 -13.23185 -12.86778 -12.24540 -12.21133 -11.97857 -11.87252 -11.51982 -11.23598 -10.92009 -10.62648 -10.22768 -10.15410 -9.67653 -9.37063 -8.67028 -8.46456 -8.19024 -7.70080 -6.07243 -4.12195 1.12726 1.28678 1.40094 2.68162 3.06701 3.28713 3.36796 3.40582 3.44852 3.66880 3.81601 3.94619 4.33187 4.47396 4.59633 4.82571 4.97566 5.11958 5.27153 5.37917 5.41027 5.69507 5.77678 5.94149 6.03468 6.13953 6.23901 6.32586 6.67965 6.71239 7.06003 7.27921 7.42196 7.57708 7.89886 8.18593 8.45927 8.88080 9.11954 9.53350 11.00736 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015208 B = 0.003401 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.698515 B = 8232.005614 C = 9563.740287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.696 3.304 13 O -0.564 6.564 14 N -0.694 5.694 15 C 0.217 3.783 16 C -0.172 4.172 17 C -0.061 4.061 18 C -0.219 4.219 19 C 0.122 3.878 20 O -0.305 6.305 21 C 0.604 3.396 22 F -0.168 7.168 23 F -0.133 7.133 24 F -0.166 7.166 25 C -0.128 4.128 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.406 0.594 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 -20.879 2.731 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.345 5.345 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.397 3.603 13 O -0.439 6.439 14 N -0.344 5.344 15 C 0.120 3.880 16 C -0.193 4.193 17 C -0.080 4.080 18 C -0.238 4.238 19 C 0.079 3.921 20 O -0.225 6.225 21 C 0.513 3.487 22 F -0.150 7.150 23 F -0.115 7.115 24 F -0.148 7.148 25 C -0.150 4.150 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.243 0.757 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.461 -20.421 2.681 20.885 hybrid contribution -0.158 0.112 -0.958 0.977 sum -3.619 -20.309 1.723 20.701 Atomic orbital electron populations 1.21616 0.81524 1.02475 1.00530 1.47526 1.05831 1.06260 1.74841 1.19294 0.92428 0.76701 0.97627 1.21477 1.36658 1.06289 0.92307 0.92379 1.24928 0.95279 0.96350 0.97472 1.69941 1.38328 1.14334 1.30686 0.86435 0.78153 0.78276 0.84514 1.19827 1.20959 1.20821 1.15953 0.85610 0.80074 0.78635 1.90912 1.11258 1.85344 1.56435 1.43003 1.10188 1.03467 1.77743 1.17137 0.91798 0.85326 0.93762 1.20915 1.02390 0.93619 1.02348 1.20605 0.93154 0.96959 0.97271 1.21380 0.99412 0.98337 1.04679 1.18452 0.82568 0.95384 0.95683 1.86469 1.32843 1.30482 1.72692 1.19355 0.76825 0.77958 0.74572 1.93286 1.73874 1.62273 1.85528 1.93303 1.41238 1.95920 1.81007 1.93294 1.94913 1.93643 1.32956 1.20627 0.95245 0.96134 1.02955 0.93485 0.90124 0.93137 0.94637 0.93571 0.92707 0.75665 0.85118 0.84892 0.85251 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.24 59.84 0.61 1.81 16 2 N -0.61 -12.48 2.86 -188.74 -0.54 -13.02 16 3 C 0.26 6.61 5.16 -5.19 -0.03 6.58 16 4 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.69 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 C 0.70 14.29 8.12 -86.92 -0.71 13.58 16 13 O -0.56 -14.02 13.35 5.29 0.07 -13.95 16 14 N -0.69 -10.54 5.21 -14.24 -0.07 -10.62 16 15 C 0.22 3.21 6.30 -83.71 -0.53 2.68 16 16 C -0.17 -1.92 9.96 -39.37 -0.39 -2.31 16 17 C -0.06 -0.63 10.03 -39.63 -0.40 -1.03 16 18 C -0.22 -2.63 8.26 -39.40 -0.33 -2.95 16 19 C 0.12 1.80 6.48 -39.24 -0.25 1.55 16 20 O -0.31 -4.49 10.37 -19.44 -0.20 -4.69 16 21 C 0.60 7.17 3.42 101.05 0.35 7.52 16 22 F -0.17 -1.82 15.54 2.25 0.04 -1.79 16 23 F -0.13 -1.54 17.53 2.25 0.04 -1.50 16 24 F -0.17 -1.90 15.58 2.25 0.04 -1.87 16 25 C -0.13 -2.16 8.63 -39.25 -0.34 -2.50 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.05 0.56 6.30 -51.93 -0.33 0.24 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.41 4.65 6.52 -40.82 -0.27 4.38 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 35 H 0.13 1.36 5.09 -52.49 -0.27 1.09 16 36 H 0.16 3.20 6.22 -52.49 -0.33 2.88 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -32.70 324.12 -5.69 -38.39 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.22 Total: 1.47 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -2.43 Total: 11.53 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.12 Total: -49.17 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.13 Total: -18.64 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.15 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.70 -5.69 -38.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176547850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.604 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds