Wall clock time and date at job start Tue Mar 31 2020 11:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00288 * 2 1 4 4 C 1.50699 * 109.46865 * 270.00128 * 3 2 1 5 5 H 1.07995 * 120.00269 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99995 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99725 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00252 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46671 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47162 * 119.99834 * 8 6 4 11 11 H 1.48497 * 109.46624 * 239.99831 * 8 6 4 12 12 C 1.34776 * 120.00089 * 179.97438 * 2 1 3 13 13 O 1.21584 * 120.00014 * 179.97438 * 12 2 1 14 14 N 1.34776 * 119.99668 * 0.02562 * 12 2 1 15 15 C 1.39941 * 119.99700 * 184.58272 * 14 12 2 16 16 C 1.38927 * 120.04228 * 144.88235 * 15 14 12 17 17 C 1.38118 * 120.04069 * 180.02562 * 16 15 14 18 18 C 1.38217 * 120.12756 * 359.71965 * 17 16 15 19 19 C 1.38762 * 120.07625 * 0.55418 * 18 17 16 20 20 O 1.35906 * 120.01653 * 179.71715 * 19 18 17 21 21 C 1.42892 * 116.99881 * 359.72733 * 20 19 18 22 22 F 1.39908 * 109.47343 * 60.00324 * 21 20 19 23 23 F 1.39903 * 109.47127 * 179.97438 * 21 20 19 24 24 F 1.39897 * 109.47651 * 299.99942 * 21 20 19 25 25 C 1.38626 * 119.96429 * 359.44924 * 19 18 17 26 26 H 1.09004 * 109.47252 * 270.00244 * 1 2 3 27 27 H 1.09002 * 109.46884 * 30.00155 * 1 2 3 28 28 H 1.08998 * 109.47540 * 150.00056 * 1 2 3 29 29 H 1.08999 * 109.47060 * 29.99693 * 3 2 1 30 30 H 1.08997 * 109.47405 * 149.99765 * 3 2 1 31 31 H 0.97004 * 119.99792 * 179.97438 * 7 6 4 32 32 H 0.96992 * 120.00302 * 4.58089 * 14 12 2 33 33 H 1.07997 * 119.97511 * 359.97438 * 16 15 14 34 34 H 1.08003 * 119.93666 * 179.97438 * 17 16 15 35 35 H 1.07995 * 119.95787 * 180.27333 * 18 17 16 36 36 H 1.08000 * 120.06397 * 180.24934 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6185 -0.6732 8 14 3.4368 3.4175 -3.4340 9 1 2.8598 2.4169 -4.3673 10 1 2.7988 4.7380 -3.6670 11 1 4.8992 3.5262 -3.6676 12 6 2.1389 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0001 14 7 1.4649 -2.3344 0.0005 15 6 2.1612 -3.5443 0.0979 16 6 1.6087 -4.6105 0.7964 17 6 2.2962 -5.8046 0.8929 18 6 3.5323 -5.9440 0.2905 19 6 4.0916 -4.8805 -0.4036 20 8 5.3097 -5.0171 -0.9905 21 6 5.9605 -6.2812 -0.8478 22 9 5.1598 -7.2836 -1.4059 23 9 7.1934 -6.2482 -1.5082 24 9 6.1652 -6.5498 0.5098 25 6 3.4046 -3.6805 -0.5026 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 4.0294 4.4445 -0.8505 32 1 0.4974 -2.3357 -0.0669 33 1 0.6413 -4.5054 1.2648 34 1 1.8652 -6.6322 1.4366 35 1 4.0655 -6.8802 0.3640 36 1 3.8366 -2.8530 -1.0459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176547850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:13 Heat of formation + Delta-G solvation = -201.947933 kcal Electronic energy + Delta-G solvation = -26489.703859 eV Core-core repulsion = 21945.078179 eV Total energy + Delta-G solvation = -4544.625680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.51043 -49.22802 -49.08680 -41.88407 -40.86625 -38.82810 -36.71076 -35.72958 -34.60773 -31.70010 -30.77640 -29.42091 -27.39010 -27.04527 -25.31646 -24.01741 -23.41434 -21.22810 -20.82475 -20.23177 -20.02571 -19.13340 -18.68467 -18.12119 -17.44070 -17.04747 -16.75069 -16.45577 -16.28953 -15.97397 -15.87276 -15.57123 -15.51150 -15.49108 -15.25563 -15.20926 -14.91136 -14.66834 -14.43830 -14.27296 -13.90072 -13.50341 -13.32138 -13.16064 -12.85696 -12.77433 -12.62217 -12.49544 -12.20306 -11.71711 -11.42698 -11.00058 -10.64752 -9.76447 -9.57457 -9.12671 -8.22506 -6.37093 0.09962 0.26085 0.41824 1.35744 1.38770 1.49466 1.61601 1.77847 2.09820 2.38052 2.64422 2.70786 2.95160 3.02651 3.08177 3.66444 3.86769 4.06660 4.16578 4.28674 4.35840 4.60789 4.66733 4.83284 4.97308 5.01977 5.17015 5.20328 5.28057 5.30698 5.52412 5.56395 5.76977 5.96723 6.04278 6.05360 6.71879 7.01188 7.29971 7.58307 8.84208 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015208 B = 0.003401 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.698515 B = 8232.005614 C = 9563.740287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.618 5.618 3 C 0.275 3.725 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.267 1.267 11 H -0.284 1.284 12 C 0.690 3.310 13 O -0.619 6.619 14 N -0.671 5.671 15 C 0.193 3.807 16 C -0.151 4.151 17 C -0.046 4.046 18 C -0.213 4.213 19 C 0.105 3.895 20 O -0.331 6.331 21 C 0.610 3.390 22 F -0.158 7.158 23 F -0.133 7.133 24 F -0.161 7.161 25 C -0.163 4.163 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.032 0.968 30 H -0.001 1.001 31 H 0.267 0.733 32 H 0.426 0.574 33 H 0.172 0.828 34 H 0.182 0.818 35 H 0.148 0.852 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 -23.319 3.016 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.352 5.352 3 C 0.153 3.847 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.193 1.193 10 H -0.192 1.192 11 H -0.210 1.210 12 C 0.392 3.608 13 O -0.499 6.499 14 N -0.323 5.323 15 C 0.097 3.903 16 C -0.171 4.171 17 C -0.064 4.064 18 C -0.232 4.232 19 C 0.063 3.937 20 O -0.251 6.251 21 C 0.520 3.480 22 F -0.140 7.140 23 F -0.114 7.114 24 F -0.143 7.143 25 C -0.184 4.184 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.267 0.733 33 H 0.189 0.811 34 H 0.199 0.801 35 H 0.165 0.835 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.917 -22.914 2.968 23.851 hybrid contribution 0.582 0.745 -0.993 1.371 sum -5.336 -22.169 1.975 22.887 Atomic orbital electron populations 1.21943 0.77624 1.04077 1.02920 1.47372 1.08150 1.04709 1.74990 1.18721 0.90996 0.78972 0.95980 1.21746 1.36836 1.06420 0.93138 0.92991 1.25809 0.94908 0.96449 1.01775 1.70050 1.38951 1.14827 1.32857 0.85397 0.77800 0.78441 0.79329 1.19334 1.19196 1.20977 1.16156 0.85093 0.81291 0.78247 1.90884 1.13984 1.86381 1.58637 1.42570 1.10870 1.02019 1.76859 1.17427 0.91606 0.85975 0.95274 1.21321 1.03506 0.92133 1.00169 1.21197 0.91821 0.97766 0.95666 1.21702 1.00194 0.97855 1.03480 1.18576 0.82692 0.95703 0.96759 1.86420 1.33354 1.32207 1.73129 1.19193 0.76721 0.77376 0.74754 1.93298 1.73640 1.61657 1.85424 1.93304 1.41191 1.95873 1.81035 1.93298 1.94885 1.93521 1.32632 1.20426 0.97097 0.95972 1.04931 0.90597 0.90797 0.89322 0.94990 0.98276 0.92382 0.73280 0.81065 0.80108 0.83485 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 10.24 127.77 1.31 3.39 16 2 N -0.62 -25.76 2.86 -869.31 -2.48 -28.25 16 3 C 0.27 14.73 5.16 85.63 0.44 15.17 16 4 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.56 5.46 84.65 0.46 1.02 16 7 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 8 Si 0.97 45.28 29.54 68.60 2.03 47.30 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 C 0.69 29.26 8.12 179.05 1.45 30.72 16 13 O -0.62 -33.06 13.35 -3.98 -0.05 -33.11 16 14 N -0.67 -19.81 5.21 -317.22 -1.65 -21.47 16 15 C 0.19 5.54 6.30 38.13 0.24 5.78 16 16 C -0.15 -2.76 9.96 22.41 0.22 -2.53 16 17 C -0.05 -0.74 10.03 22.24 0.22 -0.51 16 18 C -0.21 -4.59 8.26 22.39 0.18 -4.40 16 19 C 0.11 3.14 6.48 22.49 0.15 3.29 16 20 O -0.33 -10.10 10.37 -92.49 -0.96 -11.06 16 21 C 0.61 14.24 3.42 113.37 0.39 14.63 16 22 F -0.16 -3.22 15.54 44.97 0.70 -2.52 16 23 F -0.13 -3.06 17.53 44.97 0.79 -2.27 16 24 F -0.16 -3.52 15.58 44.97 0.70 -2.82 16 25 C -0.16 -5.74 8.63 22.49 0.19 -5.54 16 26 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 28 H 0.09 1.71 6.30 -2.39 -0.02 1.69 16 29 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 30 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.43 8.55 6.52 -92.71 -0.60 7.95 16 33 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.15 2.61 5.09 -2.91 -0.01 2.60 16 36 H 0.11 5.05 6.22 -2.91 -0.02 5.03 16 Total: -1.00 -77.71 324.12 5.41 -72.30 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.55 Total: 7.71 kcal Atomic # 6 Polarization: 24.45 SS G_CDS: 5.51 Total: 29.95 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.85 Total: -105.49 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.01 Total: -44.17 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 2.19 Total: -7.61 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -77.71 5.41 -72.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176547850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.648 kcal (2) G-P(sol) polarization free energy of solvation -77.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds