Wall clock time and date at job start Tue Mar 31 2020 11:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00192 * 2 1 4 4 C 1.50694 * 109.47365 * 270.00507 * 3 2 1 5 5 H 1.08001 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00113 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99979 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99867 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47003 * 89.99993 * 8 6 4 10 10 H 1.48494 * 109.47047 * 210.00062 * 8 6 4 11 11 H 1.48503 * 109.47201 * 330.00332 * 8 6 4 12 12 C 1.34779 * 119.99937 * 180.02562 * 2 1 3 13 13 O 1.21588 * 120.00120 * 179.97438 * 12 2 1 14 14 N 1.34780 * 120.00043 * 359.97438 * 12 2 1 15 15 C 1.40142 * 120.00193 * 184.59098 * 14 12 2 16 16 C 1.38830 * 120.00959 * 144.90607 * 15 14 12 17 17 C 1.38131 * 120.02900 * 180.23470 * 16 15 14 18 18 C 1.38655 * 120.03402 * 359.49117 * 17 16 15 19 19 O 1.36033 * 119.99075 * 180.25439 * 18 17 16 20 20 C 1.42894 * 117.00299 * 0.25652 * 19 18 17 21 21 F 1.39896 * 109.47188 * 299.99909 * 20 19 18 22 22 F 1.39906 * 109.47185 * 59.99425 * 20 19 18 23 23 C 1.38897 * 120.00759 * 0.51168 * 18 17 16 24 24 F 1.35106 * 120.00464 * 179.72316 * 23 18 17 25 25 C 1.38279 * 119.98181 * 359.74275 * 23 18 17 26 26 H 1.09004 * 109.47231 * 269.99398 * 1 2 3 27 27 H 1.08999 * 109.47283 * 29.99756 * 1 2 3 28 28 H 1.09000 * 109.47186 * 149.99799 * 1 2 3 29 29 H 1.09005 * 109.47089 * 30.00642 * 3 2 1 30 30 H 1.08996 * 109.47252 * 149.99870 * 3 2 1 31 31 H 0.96998 * 119.99621 * 179.97438 * 7 6 4 32 32 H 0.97003 * 119.99815 * 4.58875 * 14 12 2 33 33 H 1.08004 * 119.98978 * 359.95888 * 16 15 14 34 34 H 1.08002 * 119.98730 * 179.74960 * 17 16 15 35 35 H 1.08997 * 109.46868 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.01674 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3456 3.2575 -2.9126 8 14 3.7340 3.9287 -0.2528 9 1 5.1070 3.5067 0.1238 10 1 3.7499 5.3553 -0.6645 11 1 2.8275 3.7595 0.9113 12 6 2.1389 -1.1672 -0.0005 13 8 3.3547 -1.1673 -0.0010 14 7 1.4650 -2.3345 -0.0005 15 6 2.1623 -3.5462 0.0961 16 6 1.6096 -4.6117 0.7938 17 6 2.2988 -5.8046 0.8933 18 6 3.5384 -5.9427 0.2877 19 8 4.2140 -7.1196 0.3820 20 6 3.5843 -8.1722 1.1151 21 9 3.3669 -7.7571 2.4333 22 9 2.3594 -8.4886 0.5179 23 6 4.0928 -4.8777 -0.4106 24 9 5.3032 -5.0104 -0.9960 25 6 3.4057 -3.6815 -0.5062 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6085 2.0284 0.5140 30 1 3.1499 1.1384 0.5138 31 1 3.8224 4.0834 -3.0897 32 1 0.4972 -2.3357 -0.0674 33 1 0.6424 -4.5063 1.2627 34 1 1.8700 -6.6317 1.4397 35 1 4.2276 -9.0521 1.1124 36 1 3.8360 -2.8532 -1.0494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176553340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:00 Heat of formation + Delta-G solvation = -169.270511 kcal Electronic energy + Delta-G solvation = -26396.171952 eV Core-core repulsion = 21852.963271 eV Total energy + Delta-G solvation = -4543.208681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.68266 -48.78065 -47.66684 -40.53927 -39.51723 -37.62889 -35.12510 -34.25077 -32.49832 -30.77596 -29.53143 -28.25114 -26.45305 -25.84075 -23.44950 -23.04366 -21.87678 -19.84022 -19.35033 -18.48831 -18.26579 -18.24497 -17.11028 -17.01090 -16.54089 -15.98213 -15.78866 -15.69678 -15.04135 -14.76748 -14.62341 -14.11531 -14.08631 -13.92039 -13.88531 -13.81474 -13.48236 -13.15659 -13.00735 -12.69760 -12.47009 -12.28998 -12.19214 -11.97524 -11.55407 -11.43801 -11.00115 -10.55995 -10.23056 -9.97596 -9.65382 -9.45726 -8.90302 -8.61602 -8.07508 -7.71370 -6.11405 -4.10892 1.00366 1.07687 2.22814 2.90707 3.11820 3.28083 3.30628 3.33923 3.36464 3.75666 3.95216 4.06391 4.27406 4.29781 4.37296 4.57159 4.82367 5.00286 5.21006 5.31317 5.43714 5.47486 5.68279 5.76047 5.89178 5.96219 6.07666 6.35942 6.48669 6.58443 6.80920 6.97983 7.13696 7.35438 7.56922 8.31118 8.43326 8.90548 9.00342 9.48188 11.01897 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.002956 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.944402 B = 9469.348772 C = 9997.673233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.605 5.605 3 C 0.230 3.770 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.699 3.301 13 O -0.566 6.566 14 N -0.692 5.692 15 C 0.189 3.811 16 C -0.128 4.128 17 C -0.143 4.143 18 C 0.041 3.959 19 O -0.314 6.314 20 C 0.412 3.588 21 F -0.199 7.199 22 F -0.199 7.199 23 C 0.112 3.888 24 F -0.127 7.127 25 C -0.125 4.125 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.182 0.818 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.050 -22.105 9.561 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.340 5.340 3 C 0.109 3.891 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.401 3.599 13 O -0.442 6.442 14 N -0.342 5.342 15 C 0.092 3.908 16 C -0.149 4.149 17 C -0.162 4.162 18 C -0.003 4.003 19 O -0.232 6.232 20 C 0.321 3.679 21 F -0.181 7.181 22 F -0.181 7.181 23 C 0.091 3.909 24 F -0.105 7.105 25 C -0.147 4.147 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.244 0.756 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.198 0.802 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.918 -21.834 9.377 24.266 hybrid contribution -0.297 0.583 0.581 0.876 sum -5.215 -21.250 9.959 24.040 Atomic orbital electron populations 1.21648 0.80981 1.02939 1.00597 1.47142 1.05938 1.05641 1.75249 1.19650 0.92313 0.78633 0.98474 1.21334 1.37246 1.07260 0.91256 0.90734 1.24851 0.95166 0.97333 0.95607 1.69894 1.41299 1.23555 1.18682 0.86847 0.80218 0.79760 0.82824 1.19820 1.21053 1.19053 1.15874 0.85519 0.80060 0.78419 1.90903 1.11297 1.85404 1.56550 1.42927 1.10182 1.03270 1.77838 1.17188 0.92525 0.85557 0.95522 1.20699 1.01736 0.92347 1.00114 1.21088 0.93417 0.99674 1.02019 1.18715 0.93633 0.85413 1.02568 1.86671 1.45617 1.20346 1.70589 1.23370 0.81339 0.90314 0.72827 1.93100 1.95261 1.91612 1.38090 1.93098 1.48479 1.92908 1.83638 1.16693 0.83128 0.92472 0.98597 1.91522 1.40940 1.96159 1.81904 1.21357 0.95625 0.96499 1.01187 0.93360 0.89899 0.92781 0.94877 0.94280 0.92495 0.75596 0.84472 0.83944 0.80187 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.24 59.85 0.61 1.76 16 2 N -0.61 -11.96 2.86 -188.74 -0.54 -12.50 16 3 C 0.23 5.47 4.23 -5.20 -0.02 5.45 16 4 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 5 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 8 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 12 C 0.70 13.99 8.12 -86.91 -0.71 13.28 16 13 O -0.57 -13.65 13.36 5.29 0.07 -13.58 16 14 N -0.69 -10.29 5.22 -14.19 -0.07 -10.37 16 15 C 0.19 2.77 6.30 -83.62 -0.53 2.24 16 16 C -0.13 -1.47 9.96 -39.40 -0.39 -1.86 16 17 C -0.14 -1.66 8.25 -39.47 -0.33 -1.98 16 18 C 0.04 0.55 6.49 -39.18 -0.25 0.30 16 19 O -0.31 -3.60 10.29 -19.85 -0.20 -3.81 16 20 C 0.41 3.04 5.98 101.05 0.60 3.64 16 21 F -0.20 -1.75 15.56 2.25 0.04 -1.72 16 22 F -0.20 -1.69 15.60 2.25 0.04 -1.65 16 23 C 0.11 1.74 7.31 -39.32 -0.29 1.45 16 24 F -0.13 -2.09 17.11 2.25 0.04 -2.05 16 25 C -0.13 -2.10 8.67 -39.35 -0.34 -2.44 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.05 0.59 6.30 -51.93 -0.33 0.26 16 29 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 30 H 0.04 1.00 6.85 -51.93 -0.36 0.64 16 31 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 32 H 0.41 4.53 6.52 -40.82 -0.27 4.26 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.14 1.40 5.09 -52.49 -0.27 1.13 16 35 H 0.18 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.17 3.31 6.22 -52.49 -0.33 2.98 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -35.32 320.02 -4.98 -40.30 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.19 Total: 2.08 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -2.08 Total: 8.50 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.16 Total: -49.50 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.13 Total: -17.39 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.32 -4.98 -40.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176553340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.973 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds