Wall clock time and date at job start Tue Mar 31 2020 11:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00192 * 2 1 4 4 C 1.50694 * 109.47365 * 270.00507 * 3 2 1 5 5 H 1.08001 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00113 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99979 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99867 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47003 * 89.99993 * 8 6 4 10 10 H 1.48494 * 109.47047 * 210.00062 * 8 6 4 11 11 H 1.48503 * 109.47201 * 330.00332 * 8 6 4 12 12 C 1.34779 * 119.99937 * 180.02562 * 2 1 3 13 13 O 1.21588 * 120.00120 * 179.97438 * 12 2 1 14 14 N 1.34780 * 120.00043 * 359.97438 * 12 2 1 15 15 C 1.40142 * 120.00193 * 184.59098 * 14 12 2 16 16 C 1.38830 * 120.00959 * 144.90607 * 15 14 12 17 17 C 1.38131 * 120.02900 * 180.23470 * 16 15 14 18 18 C 1.38655 * 120.03402 * 359.49117 * 17 16 15 19 19 O 1.36033 * 119.99075 * 180.25439 * 18 17 16 20 20 C 1.42894 * 117.00299 * 0.25652 * 19 18 17 21 21 F 1.39896 * 109.47188 * 299.99909 * 20 19 18 22 22 F 1.39906 * 109.47185 * 59.99425 * 20 19 18 23 23 C 1.38897 * 120.00759 * 0.51168 * 18 17 16 24 24 F 1.35106 * 120.00464 * 179.72316 * 23 18 17 25 25 C 1.38279 * 119.98181 * 359.74275 * 23 18 17 26 26 H 1.09004 * 109.47231 * 269.99398 * 1 2 3 27 27 H 1.08999 * 109.47283 * 29.99756 * 1 2 3 28 28 H 1.09000 * 109.47186 * 149.99799 * 1 2 3 29 29 H 1.09005 * 109.47089 * 30.00642 * 3 2 1 30 30 H 1.08996 * 109.47252 * 149.99870 * 3 2 1 31 31 H 0.96998 * 119.99621 * 179.97438 * 7 6 4 32 32 H 0.97003 * 119.99815 * 4.58875 * 14 12 2 33 33 H 1.08004 * 119.98978 * 359.95888 * 16 15 14 34 34 H 1.08002 * 119.98730 * 179.74960 * 17 16 15 35 35 H 1.08997 * 109.46868 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.01674 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3456 3.2575 -2.9126 8 14 3.7340 3.9287 -0.2528 9 1 5.1070 3.5067 0.1238 10 1 3.7499 5.3553 -0.6645 11 1 2.8275 3.7595 0.9113 12 6 2.1389 -1.1672 -0.0005 13 8 3.3547 -1.1673 -0.0010 14 7 1.4650 -2.3345 -0.0005 15 6 2.1623 -3.5462 0.0961 16 6 1.6096 -4.6117 0.7938 17 6 2.2988 -5.8046 0.8933 18 6 3.5384 -5.9427 0.2877 19 8 4.2140 -7.1196 0.3820 20 6 3.5843 -8.1722 1.1151 21 9 3.3669 -7.7571 2.4333 22 9 2.3594 -8.4886 0.5179 23 6 4.0928 -4.8777 -0.4106 24 9 5.3032 -5.0104 -0.9960 25 6 3.4057 -3.6815 -0.5062 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6085 2.0284 0.5140 30 1 3.1499 1.1384 0.5138 31 1 3.8224 4.0834 -3.0897 32 1 0.4972 -2.3357 -0.0674 33 1 0.6424 -4.5063 1.2627 34 1 1.8700 -6.6317 1.4397 35 1 4.2276 -9.0521 1.1124 36 1 3.8360 -2.8532 -1.0494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176553340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:59 Heat of formation + Delta-G solvation = -194.765463 kcal Electronic energy + Delta-G solvation = -26397.277496 eV Core-core repulsion = 21852.963271 eV Total energy + Delta-G solvation = -4544.314225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.30856 -50.00458 -48.29146 -41.83281 -40.63290 -38.74731 -36.72485 -35.62211 -34.56238 -31.86801 -30.95927 -29.75677 -27.53109 -26.92462 -24.85644 -24.31891 -23.23029 -21.24307 -20.20068 -19.63849 -19.33982 -19.14541 -18.89913 -18.30505 -17.55556 -17.22908 -16.97839 -16.81514 -16.52623 -16.41607 -15.59457 -15.39184 -15.15146 -15.04720 -14.84234 -14.79275 -14.60474 -14.48185 -14.16405 -14.01986 -13.80474 -13.67736 -13.28707 -13.20815 -13.04302 -12.80887 -12.48192 -12.39785 -12.03524 -11.74579 -11.29484 -11.05908 -10.82319 -10.06128 -9.54507 -8.97728 -8.33385 -6.38773 -0.07957 -0.02622 1.33635 1.39191 1.44570 1.47175 1.61251 2.00623 2.32025 2.46678 2.51946 2.86791 3.01540 3.08985 3.44360 3.63444 3.70409 3.84759 3.98082 4.24584 4.34920 4.38258 4.60163 4.71150 4.75918 4.86431 4.91367 4.94370 5.04674 5.18170 5.45134 5.48678 5.52991 5.87813 5.92334 6.25550 6.62912 6.93723 7.22873 7.51629 8.83681 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.002956 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.944402 B = 9469.348772 C = 9997.673233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.614 5.614 3 C 0.239 3.761 4 C -0.538 4.538 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.233 1.233 12 C 0.693 3.307 13 O -0.618 6.618 14 N -0.669 5.669 15 C 0.169 3.831 16 C -0.098 4.098 17 C -0.137 4.137 18 C 0.051 3.949 19 O -0.328 6.328 20 C 0.408 3.592 21 F -0.205 7.205 22 F -0.204 7.204 23 C 0.083 3.917 24 F -0.142 7.142 25 C -0.147 4.147 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.268 0.732 32 H 0.427 0.573 33 H 0.182 0.818 34 H 0.169 0.831 35 H 0.236 0.764 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 -23.912 12.593 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.348 5.348 3 C 0.117 3.883 4 C -0.576 4.576 5 H 0.046 0.954 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.156 1.156 12 C 0.394 3.606 13 O -0.498 6.498 14 N -0.321 5.321 15 C 0.073 3.927 16 C -0.118 4.118 17 C -0.156 4.156 18 C 0.006 3.994 19 O -0.247 6.247 20 C 0.319 3.681 21 F -0.187 7.187 22 F -0.186 7.186 23 C 0.063 3.937 24 F -0.120 7.120 25 C -0.169 4.169 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.268 0.732 33 H 0.200 0.800 34 H 0.186 0.814 35 H 0.252 0.748 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.236 -23.699 12.422 27.718 hybrid contribution 0.358 0.942 -0.419 1.092 sum -6.878 -22.756 12.003 26.631 Atomic orbital electron populations 1.21996 0.77301 1.04114 1.03337 1.47111 1.08200 1.04304 1.75193 1.19308 0.92676 0.81112 0.95249 1.21595 1.36824 1.06679 0.92532 0.95425 1.25869 0.95283 0.99020 0.98642 1.70055 1.42730 1.24500 1.21404 0.85703 0.79574 0.77640 0.79928 1.20478 1.20135 1.15550 1.16119 0.85073 0.81285 0.78094 1.90877 1.13871 1.86388 1.58690 1.42521 1.10895 1.01812 1.76921 1.17352 0.92212 0.86264 0.96889 1.21082 1.02697 0.90496 0.97541 1.21445 0.92460 1.00418 1.01260 1.18787 0.93921 0.85560 1.01129 1.86684 1.46454 1.20266 1.71248 1.24292 0.81851 0.90262 0.71705 1.93086 1.95328 1.91738 1.38572 1.93088 1.49041 1.92731 1.83708 1.16834 0.83122 0.93372 1.00420 1.91468 1.41872 1.96269 1.82430 1.21119 0.97245 0.96030 1.02477 0.89630 0.90810 0.89715 0.92291 0.96153 0.92297 0.73175 0.80035 0.81351 0.74812 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.89 10.24 127.77 1.31 3.19 16 2 N -0.61 -23.98 2.86 -869.32 -2.48 -26.46 16 3 C 0.24 11.38 4.23 85.63 0.36 11.74 16 4 C -0.54 -31.43 9.94 25.60 0.25 -31.18 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 6 C 0.01 0.58 5.47 84.66 0.46 1.04 16 7 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 8 Si 0.95 44.19 27.47 68.60 1.88 46.08 16 9 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.23 -9.51 6.54 99.48 0.65 -8.86 16 12 C 0.69 28.04 8.12 179.05 1.45 29.50 16 13 O -0.62 -31.47 13.36 -3.99 -0.05 -31.52 16 14 N -0.67 -19.12 5.22 -317.08 -1.66 -20.78 16 15 C 0.17 4.81 6.30 38.09 0.24 5.05 16 16 C -0.10 -1.91 9.96 22.39 0.22 -1.68 16 17 C -0.14 -2.74 8.25 22.34 0.18 -2.56 16 18 C 0.05 1.30 6.49 22.53 0.15 1.45 16 19 O -0.33 -6.92 10.29 -93.93 -0.97 -7.89 16 20 C 0.41 4.63 5.98 113.37 0.68 5.31 16 21 F -0.21 -2.92 15.56 44.97 0.70 -2.22 16 22 F -0.20 -2.75 15.60 44.97 0.70 -2.04 16 23 C 0.08 2.69 7.31 22.44 0.16 2.85 16 24 F -0.14 -5.00 17.11 44.97 0.77 -4.23 16 25 C -0.15 -5.20 8.67 22.42 0.19 -5.01 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 28 H 0.08 1.59 6.30 -2.39 -0.02 1.57 16 29 H 0.06 2.51 7.13 -2.38 -0.02 2.49 16 30 H 0.02 1.05 6.85 -2.39 -0.02 1.03 16 31 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 32 H 0.43 8.22 6.52 -92.71 -0.60 7.62 16 33 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.17 2.55 5.09 -2.91 -0.01 2.54 16 35 H 0.24 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.13 5.56 6.22 -2.91 -0.02 5.54 16 Total: -1.00 -84.44 320.02 5.37 -79.07 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.50 Total: 10.15 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 5.67 Total: 19.71 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -3.84 Total: -107.10 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.02 Total: -39.41 kcal Atomic # 9 Polarization: -10.67 SS G_CDS: 2.17 Total: -8.50 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Total: -84.44 5.37 -79.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176553340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.692 kcal (2) G-P(sol) polarization free energy of solvation -84.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds