Wall clock time and date at job start Tue Mar 31 2020 11:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47440 * 269.99922 * 3 2 1 5 5 H 1.48495 * 109.47076 * 30.00551 * 3 2 1 6 6 H 1.48507 * 109.46809 * 150.00007 * 3 2 1 7 7 C 1.37877 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47630 * 180.02562 * 9 7 2 11 11 O 1.45186 * 109.47468 * 179.97438 * 10 9 7 12 12 C 1.34232 * 117.00492 * 180.02562 * 11 10 9 13 13 O 1.20824 * 119.99458 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00659 * 180.02562 * 12 11 10 15 15 C 1.52992 * 109.47592 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.31821 * 122.55246 * 265.02639 * 17 16 15 19 19 S 1.75309 * 111.40073 * 179.97438 * 18 17 16 20 20 C 1.75903 * 92.19270 * 359.97438 * 19 18 17 21 21 C 1.39851 * 130.56478 * 179.97438 * 20 19 18 22 22 C 1.37462 * 120.18213 * 179.97438 * 21 20 19 23 23 C 1.38854 * 120.18667 * 0.02688 * 22 21 20 24 24 C 1.36095 * 120.58987 * 359.97438 * 23 22 21 25 25 C 1.39750 * 109.68150 * 359.75085 * 20 19 18 26 26 H 0.97001 * 119.99411 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46748 * 60.00115 * 9 7 2 28 28 H 1.09000 * 109.47095 * 300.00441 * 9 7 2 29 29 H 1.09003 * 109.46656 * 59.99887 * 10 9 7 30 30 H 1.08997 * 109.47319 * 300.00714 * 10 9 7 31 31 H 1.09002 * 109.47210 * 59.99728 * 14 12 11 32 32 H 1.09001 * 109.46665 * 299.99987 * 14 12 11 33 33 H 1.09002 * 109.47103 * 59.99616 * 15 14 12 34 34 H 1.08998 * 109.46862 * 300.00428 * 15 14 12 35 35 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 36 36 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 37 37 H 1.07994 * 124.30124 * 359.97438 * 18 17 16 38 38 H 1.07998 * 119.90909 * 0.02756 * 21 20 19 39 39 H 1.07998 * 119.90981 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.70285 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.76703 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 8 1.5192 -4.9195 0.0001 12 6 2.2502 -6.0454 0.0007 13 8 3.4568 -5.9821 0.0012 14 6 1.5661 -7.3881 0.0008 15 6 2.6197 -8.4974 0.0022 16 6 1.9251 -9.8606 0.0029 17 6 2.9630 -10.9533 0.0036 18 6 3.3817 -11.5345 -1.1029 19 16 4.5881 -12.7606 -0.7644 20 6 4.5093 -12.4565 0.9663 21 6 5.2016 -13.0502 2.0265 22 6 4.9705 -12.6410 3.3183 23 6 4.0479 -11.6362 3.5779 24 6 3.3632 -11.0451 2.5610 25 6 3.5839 -11.4415 1.2242 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8895 30 1 2.8719 -3.6044 -0.8904 31 1 0.9436 -7.4788 -0.8894 32 1 0.9429 -7.4783 0.8905 33 1 3.2418 -8.4065 0.8926 34 1 3.2432 -8.4073 -0.8873 35 1 1.3027 -9.9518 -0.8873 36 1 1.3019 -9.9503 0.8926 37 1 3.0268 -11.2869 -2.0924 38 1 5.9205 -13.8318 1.8297 39 1 5.5079 -13.1022 4.1336 40 1 3.8721 -11.3211 4.5958 41 1 2.6490 -10.2646 2.7780 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176828780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:43 Heat of formation + Delta-G solvation = -72.663696 kcal Electronic energy + Delta-G solvation = -22256.614906 eV Core-core repulsion = 18805.745366 eV Total energy + Delta-G solvation = -3450.869540 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.11536 -39.83916 -36.90276 -36.07335 -33.80171 -33.33466 -31.35964 -30.41962 -29.86151 -28.07414 -25.10715 -23.74620 -23.08164 -22.45262 -20.97369 -20.18719 -19.74473 -18.46161 -17.30072 -16.41481 -16.21866 -15.98877 -15.82770 -15.65455 -15.34696 -14.85968 -14.50488 -14.26969 -14.00028 -13.79442 -13.24929 -12.91467 -12.82654 -12.53055 -12.34955 -12.25338 -11.86598 -11.84092 -11.33713 -11.24154 -11.21108 -11.03250 -10.96864 -10.83648 -10.74839 -10.68722 -10.19506 -9.89309 -9.63730 -9.60050 -9.29917 -8.84834 -8.44939 -7.97495 -6.11022 -4.15288 0.41977 0.91325 1.23850 1.69136 1.93213 2.60475 3.20468 3.28123 3.34312 3.38415 3.41011 4.23436 4.35519 4.38854 4.58045 4.66642 4.79251 4.92755 4.94298 4.98669 5.08983 5.20664 5.25513 5.30383 5.35150 5.47142 5.52818 5.58499 5.64155 5.71950 5.94066 6.01589 6.08641 6.09882 6.12079 6.17216 6.22204 6.51819 6.64198 7.03209 7.55858 7.61934 7.86512 8.19754 8.28194 8.90267 9.49081 11.00471 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.025727 B = 0.001891 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.087959 B =14805.681026 C =15191.333235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.359 6.359 12 C 0.452 3.548 13 O -0.520 6.520 14 C -0.115 4.115 15 C -0.103 4.103 16 C -0.063 4.063 17 C -0.077 4.077 18 C -0.192 4.192 19 S 0.074 5.926 20 C -0.138 4.138 21 C -0.086 4.086 22 C -0.104 4.104 23 C -0.119 4.119 24 C -0.075 4.075 25 C -0.068 4.068 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.168 0.832 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -29.806 2.858 30.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.275 6.275 12 C 0.296 3.704 13 O -0.409 6.409 14 C -0.153 4.153 15 C -0.141 4.141 16 C -0.103 4.103 17 C -0.089 4.089 18 C -0.326 4.326 19 S 0.340 5.660 20 C -0.253 4.253 21 C -0.109 4.109 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.095 4.095 25 C -0.076 4.076 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.186 0.814 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.405 -30.602 1.845 31.320 hybrid contribution -0.177 1.965 0.769 2.117 sum 6.228 -28.637 2.614 29.423 Atomic orbital electron populations 1.69975 1.06082 1.26974 1.49810 1.24989 0.94934 0.99404 0.94883 0.86466 0.79765 0.82802 0.78248 1.20474 1.21042 1.19727 1.20986 0.93177 0.90151 1.52140 0.92280 1.19169 0.94192 0.89084 0.98841 1.23617 0.96339 0.78939 1.00875 1.86521 1.42515 1.15921 1.82581 1.23588 0.86634 0.87476 0.72741 1.90633 1.15948 1.88406 1.45938 1.21374 0.99433 0.88706 1.05787 1.21384 0.97241 0.91056 1.04373 1.20384 0.95189 0.91119 1.03580 1.19675 0.99613 0.98867 0.90755 1.24886 1.03103 1.02152 1.02417 1.84115 1.43451 1.40415 0.98066 1.22702 1.02798 1.02032 0.97771 1.20471 0.99336 0.99980 0.91099 1.21070 0.98105 0.97253 0.96017 1.20750 0.96869 0.96906 0.99417 1.20773 0.99255 0.99166 0.90310 1.19173 0.97551 0.96927 0.93956 0.92716 0.95374 0.95371 0.92393 0.92394 0.87801 0.87823 0.90763 0.90761 0.90213 0.90286 0.81419 0.85648 0.85253 0.85336 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.07 1.69 5.40 37.16 0.20 1.89 16 11 O -0.36 -7.15 10.22 -39.26 -0.40 -7.55 16 12 C 0.45 7.68 7.96 36.00 0.29 7.96 16 13 O -0.52 -10.26 15.73 -18.75 -0.29 -10.56 16 14 C -0.12 -1.27 5.81 -27.89 -0.16 -1.43 16 15 C -0.10 -1.06 4.49 -26.74 -0.12 -1.18 16 16 C -0.06 -0.50 5.35 -27.88 -0.15 -0.65 16 17 C -0.08 -0.73 5.22 -103.67 -0.54 -1.27 16 18 C -0.19 -1.70 10.74 28.84 0.31 -1.39 16 19 S 0.07 0.66 23.23 -107.50 -2.50 -1.83 16 20 C -0.14 -1.38 6.48 -38.41 -0.25 -1.63 16 21 C -0.09 -0.73 10.07 -39.26 -0.40 -1.12 16 22 C -0.10 -0.77 10.03 -39.64 -0.40 -1.17 16 23 C -0.12 -0.93 9.95 -40.12 -0.40 -1.33 16 24 C -0.08 -0.68 9.76 -39.24 -0.38 -1.06 16 25 C -0.07 -0.69 6.01 -105.37 -0.63 -1.33 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 30 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.08 0.54 7.85 -51.93 -0.41 0.13 16 37 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.13 0.96 7.83 -52.49 -0.41 0.55 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -32.93 367.62 -10.98 -43.91 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.85 Total: -3.48 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.19 Total: -16.82 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.70 Total: -18.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.50 Total: -1.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.93 -10.98 -43.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176828780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.751 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds