Wall clock time and date at job start Tue Mar 31 2020 11:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47440 * 269.99922 * 3 2 1 5 5 H 1.48495 * 109.47076 * 30.00551 * 3 2 1 6 6 H 1.48507 * 109.46809 * 150.00007 * 3 2 1 7 7 C 1.37877 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47630 * 180.02562 * 9 7 2 11 11 O 1.45186 * 109.47468 * 179.97438 * 10 9 7 12 12 C 1.34232 * 117.00492 * 180.02562 * 11 10 9 13 13 O 1.20824 * 119.99458 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00659 * 180.02562 * 12 11 10 15 15 C 1.52992 * 109.47592 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.31821 * 122.55246 * 265.02639 * 17 16 15 19 19 S 1.75309 * 111.40073 * 179.97438 * 18 17 16 20 20 C 1.75903 * 92.19270 * 359.97438 * 19 18 17 21 21 C 1.39851 * 130.56478 * 179.97438 * 20 19 18 22 22 C 1.37462 * 120.18213 * 179.97438 * 21 20 19 23 23 C 1.38854 * 120.18667 * 0.02688 * 22 21 20 24 24 C 1.36095 * 120.58987 * 359.97438 * 23 22 21 25 25 C 1.39750 * 109.68150 * 359.75085 * 20 19 18 26 26 H 0.97001 * 119.99411 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46748 * 60.00115 * 9 7 2 28 28 H 1.09000 * 109.47095 * 300.00441 * 9 7 2 29 29 H 1.09003 * 109.46656 * 59.99887 * 10 9 7 30 30 H 1.08997 * 109.47319 * 300.00714 * 10 9 7 31 31 H 1.09002 * 109.47210 * 59.99728 * 14 12 11 32 32 H 1.09001 * 109.46665 * 299.99987 * 14 12 11 33 33 H 1.09002 * 109.47103 * 59.99616 * 15 14 12 34 34 H 1.08998 * 109.46862 * 300.00428 * 15 14 12 35 35 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 36 36 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 37 37 H 1.07994 * 124.30124 * 359.97438 * 18 17 16 38 38 H 1.07998 * 119.90909 * 0.02756 * 21 20 19 39 39 H 1.07998 * 119.90981 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.70285 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.76703 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 8 1.5192 -4.9195 0.0001 12 6 2.2502 -6.0454 0.0007 13 8 3.4568 -5.9821 0.0012 14 6 1.5661 -7.3881 0.0008 15 6 2.6197 -8.4974 0.0022 16 6 1.9251 -9.8606 0.0029 17 6 2.9630 -10.9533 0.0036 18 6 3.3817 -11.5345 -1.1029 19 16 4.5881 -12.7606 -0.7644 20 6 4.5093 -12.4565 0.9663 21 6 5.2016 -13.0502 2.0265 22 6 4.9705 -12.6410 3.3183 23 6 4.0479 -11.6362 3.5779 24 6 3.3632 -11.0451 2.5610 25 6 3.5839 -11.4415 1.2242 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8895 30 1 2.8719 -3.6044 -0.8904 31 1 0.9436 -7.4788 -0.8894 32 1 0.9429 -7.4783 0.8905 33 1 3.2418 -8.4065 0.8926 34 1 3.2432 -8.4073 -0.8873 35 1 1.3027 -9.9518 -0.8873 36 1 1.3019 -9.9503 0.8926 37 1 3.0268 -11.2869 -2.0924 38 1 5.9205 -13.8318 1.8297 39 1 5.5079 -13.1022 4.1336 40 1 3.8721 -11.3211 4.5958 41 1 2.6490 -10.2646 2.7780 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176828780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:42 Heat of formation + Delta-G solvation = -88.189201 kcal Electronic energy + Delta-G solvation = -22257.288143 eV Core-core repulsion = 18805.745366 eV Total energy + Delta-G solvation = -3451.542776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44508 -40.59471 -37.96764 -37.24516 -35.45362 -34.64353 -32.38816 -31.94365 -30.61540 -28.96410 -26.99895 -24.65036 -23.78559 -23.33771 -22.77168 -21.46185 -20.41069 -19.13049 -18.90145 -18.07668 -17.75804 -17.26703 -16.63611 -16.50715 -16.34115 -16.08325 -15.82761 -14.98914 -14.92964 -14.64110 -14.44294 -14.39473 -14.16843 -13.60857 -13.34899 -13.16552 -13.04997 -12.90039 -12.68483 -12.59421 -12.54395 -12.48389 -11.99826 -11.89585 -11.86075 -11.69569 -11.55012 -11.50801 -11.44821 -11.28115 -10.62136 -10.53538 -9.48868 -8.63351 -8.28022 -6.41209 -0.21903 0.28238 0.59015 1.03190 1.24052 1.27572 1.40371 1.42129 1.53299 1.85160 2.39867 2.76607 3.06152 3.62984 3.67929 3.75062 3.93932 4.04302 4.10225 4.21207 4.24898 4.31740 4.38252 4.45366 4.51156 4.55714 4.65808 4.69191 4.74219 4.80007 4.93108 4.95763 5.07097 5.27148 5.29808 5.31370 5.41912 5.45938 5.52437 5.58718 5.59668 5.75736 5.94403 6.05889 6.71282 6.79631 7.28480 8.84468 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.025727 B = 0.001891 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.087959 B =14805.681026 C =15191.333235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.006 3.994 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.367 6.367 12 C 0.448 3.552 13 O -0.551 6.551 14 C -0.104 4.104 15 C -0.094 4.094 16 C -0.054 4.054 17 C -0.090 4.090 18 C -0.198 4.198 19 S 0.067 5.933 20 C -0.161 4.161 21 C -0.099 4.099 22 C -0.104 4.104 23 C -0.124 4.124 24 C -0.091 4.091 25 C -0.091 4.091 26 H 0.268 0.732 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.186 0.814 38 H 0.140 0.860 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -30.343 3.323 31.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.081 0.919 9 C -0.007 4.007 10 C 0.017 3.983 11 O -0.284 6.284 12 C 0.294 3.706 13 O -0.442 6.442 14 C -0.141 4.141 15 C -0.132 4.132 16 C -0.094 4.094 17 C -0.102 4.102 18 C -0.331 4.331 19 S 0.332 5.668 20 C -0.276 4.276 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.111 4.111 25 C -0.099 4.099 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.204 0.796 38 H 0.158 0.842 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.535 -31.167 2.310 31.929 hybrid contribution -0.204 2.029 0.661 2.144 sum 6.331 -29.138 2.971 29.965 Atomic orbital electron populations 1.70091 1.07746 1.28285 1.50315 1.25965 0.95883 1.03395 0.94083 0.85324 0.78511 0.77784 0.78689 1.19521 1.20271 1.18854 1.21376 0.93637 0.91354 1.52565 0.91886 1.18979 0.94330 0.90607 0.96739 1.23102 0.95025 0.79532 1.00688 1.86521 1.42745 1.15926 1.83197 1.24828 0.86550 0.88152 0.71112 1.90622 1.17526 1.88671 1.47345 1.21569 0.99580 0.84565 1.08381 1.21289 0.96875 0.92247 1.02815 1.20350 0.94831 0.88858 1.05319 1.19875 1.00160 0.99442 0.90681 1.25177 1.02816 1.01861 1.03242 1.84035 1.43854 1.40820 0.98068 1.22994 1.03528 1.02701 0.98379 1.20792 0.99620 1.00440 0.91330 1.21444 0.97778 0.96850 0.96395 1.21108 0.96381 0.96594 1.00280 1.21030 0.99981 0.99796 0.90256 1.19483 0.98115 0.97451 0.94807 0.92298 0.97440 0.97425 0.92532 0.92525 0.84987 0.85038 0.92515 0.92299 0.88178 0.88828 0.79634 0.84218 0.82604 0.83170 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.66 5.35 29.85 0.16 1.82 16 10 C 0.09 4.10 5.40 71.98 0.39 4.49 16 11 O -0.37 -14.54 10.22 -51.43 -0.53 -15.06 16 12 C 0.45 14.82 7.96 71.24 0.57 15.39 16 13 O -0.55 -21.73 15.73 21.97 0.35 -21.38 16 14 C -0.10 -2.03 5.81 29.84 0.17 -1.86 16 15 C -0.09 -1.80 4.49 30.59 0.14 -1.66 16 16 C -0.05 -0.74 5.35 29.85 0.16 -0.58 16 17 C -0.09 -1.60 5.22 -18.80 -0.10 -1.70 16 18 C -0.20 -3.33 10.74 67.04 0.72 -2.61 16 19 S 0.07 1.19 23.23 -56.49 -1.31 -0.12 16 20 C -0.16 -3.18 6.48 23.03 0.15 -3.03 16 21 C -0.10 -1.60 10.07 22.48 0.23 -1.38 16 22 C -0.10 -1.39 10.03 22.23 0.22 -1.16 16 23 C -0.12 -1.75 9.95 21.92 0.22 -1.53 16 24 C -0.09 -1.55 9.76 22.49 0.22 -1.33 16 25 C -0.09 -1.80 6.01 -20.35 -0.12 -1.92 16 26 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 30 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 31 H 0.13 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 34 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.10 0.97 8.09 -2.39 -0.02 0.95 16 36 H 0.09 1.02 7.85 -2.39 -0.02 1.00 16 37 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 41 H 0.14 1.91 7.83 -2.91 -0.02 1.89 16 Total: -1.00 -72.12 367.62 5.65 -66.47 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.02 Total: 6.98 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 3.82 Total: -27.58 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.18 Total: -36.44 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -1.31 Total: -0.12 kcal Total: -72.12 5.65 -66.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176828780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.722 kcal (2) G-P(sol) polarization free energy of solvation -72.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds