Wall clock time and date at job start Tue Mar 31 2020 11:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35749 * 117.00454 * 2 1 4 4 C 1.39214 * 120.81078 * 0.02866 * 3 2 1 5 5 C 1.38306 * 119.28973 * 179.97438 * 4 3 2 6 6 N 1.31613 * 120.97019 * 359.97438 * 5 4 3 7 7 C 1.32800 * 121.78355 * 359.70245 * 6 5 4 8 8 C 1.48182 * 119.70167 * 180.29799 * 7 6 5 9 9 O 1.21514 * 119.99938 * 173.39703 * 8 7 6 10 10 N 1.34773 * 119.99785 * 353.38947 * 8 7 6 11 11 C 1.46497 * 120.00308 * 3.02002 * 10 8 7 12 12 C 1.50703 * 109.46882 * 82.67748 * 11 10 8 13 13 H 1.07997 * 120.00244 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99418 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00498 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99243 * 180.02562 * 14 12 11 17 17 H 1.48488 * 109.47530 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46740 * 120.00354 * 16 14 12 19 19 H 1.48506 * 109.46844 * 239.99727 * 16 14 12 20 20 C 1.46503 * 119.99791 * 183.01759 * 10 8 7 21 21 C 1.53006 * 109.47070 * 85.63641 * 20 10 8 22 22 F 1.39908 * 109.46858 * 59.99987 * 21 20 10 23 23 F 1.39895 * 109.47287 * 179.97438 * 21 20 10 24 24 F 1.39895 * 109.47460 * 300.00312 * 21 20 10 25 25 C 1.39102 * 120.59822 * 0.58805 * 7 6 5 26 26 H 1.09001 * 109.47288 * 59.99932 * 1 2 3 27 27 H 1.08998 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47026 * 299.99607 * 1 2 3 29 29 H 1.08001 * 120.35524 * 359.94865 * 4 3 2 30 30 H 1.07998 * 119.51550 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47037 * 202.67823 * 11 10 8 32 32 H 1.09001 * 109.47115 * 322.67578 * 11 10 8 33 33 H 0.96996 * 120.00117 * 179.97438 * 15 14 12 34 34 H 1.08994 * 109.47297 * 205.63800 * 20 10 8 35 35 H 1.08993 * 109.47165 * 325.64102 * 20 10 8 36 36 H 1.08002 * 120.51177 * 179.70187 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0006 5 6 1.9643 3.6029 0.0011 6 7 3.2792 3.6590 0.0016 7 6 4.0262 2.5610 0.0074 8 6 5.5034 2.6780 0.0143 9 8 6.1910 1.6841 0.1407 10 7 6.0843 3.8867 -0.1197 11 6 5.2560 5.0920 -0.2057 12 6 4.8702 5.5364 1.1817 13 1 5.2078 4.9767 2.0414 14 6 4.0852 6.6569 1.3533 15 7 3.6728 7.3376 0.3063 16 14 3.6076 7.2081 3.0731 17 1 4.1941 6.2787 4.0716 18 1 4.1202 8.5810 3.3130 19 1 2.1281 7.2027 3.2016 20 6 7.5440 3.9953 -0.1793 21 6 8.0124 3.7887 -1.6212 22 9 7.4381 4.7651 -2.4424 23 9 9.4063 3.8930 -1.6782 24 9 7.6208 2.5200 -2.0615 25 6 3.4346 1.3021 0.0010 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 0.2244 2.3532 0.0002 30 1 1.3927 4.5191 0.0012 31 1 5.8187 5.8852 -0.6979 32 1 4.3561 4.8742 -0.7809 33 1 3.1204 8.1256 0.4270 34 1 7.8491 4.9839 0.1638 35 1 7.9914 3.2347 0.4605 36 1 4.0435 0.4101 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177626304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:35 Heat of formation + Delta-G solvation = -163.286879 kcal Electronic energy + Delta-G solvation = -27662.449786 eV Core-core repulsion = 23119.500575 eV Total energy + Delta-G solvation = -4542.949211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.63753 -47.19720 -47.07473 -40.54279 -39.16526 -37.65339 -35.35495 -32.59709 -31.35498 -31.24662 -29.21815 -27.65498 -26.84109 -24.25124 -23.14331 -22.87717 -22.35616 -19.78708 -18.25453 -18.06514 -17.69763 -17.23277 -16.89337 -16.17190 -15.91028 -15.82488 -15.51028 -15.08999 -14.44270 -14.37785 -14.21689 -14.00918 -13.97047 -13.60118 -13.57163 -13.28293 -13.26801 -13.12240 -12.93327 -12.35558 -12.31409 -11.98579 -11.78980 -11.60277 -11.42230 -11.12257 -10.92022 -10.76561 -10.20479 -9.79328 -9.58842 -8.91728 -8.71906 -8.58725 -8.22209 -7.87761 -6.04374 -4.03703 1.02503 1.66665 2.95330 3.05876 3.24704 3.33263 3.34355 3.41294 3.56845 4.22068 4.37280 4.43819 4.48650 4.62555 4.78806 4.81897 5.01635 5.03002 5.13188 5.31706 5.32211 5.36726 5.43649 5.59905 5.72051 5.92647 6.12882 6.25150 6.50393 6.67831 7.27595 7.42057 7.67394 7.85489 8.05738 8.23216 8.36036 8.70582 8.96408 9.55948 11.04128 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.009188 B = 0.006643 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.808034 B = 4214.067260 C = 6596.605592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.247 4.247 5 C 0.131 3.869 6 N -0.398 5.398 7 C 0.116 3.884 8 C 0.574 3.426 9 O -0.549 6.549 10 N -0.576 5.576 11 C 0.225 3.775 12 C -0.500 4.500 13 H 0.053 0.947 14 C 0.070 3.930 15 N -0.888 5.888 16 Si 0.885 3.115 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.079 3.921 21 C 0.431 3.569 22 F -0.180 7.180 23 F -0.190 7.190 24 F -0.179 7.179 25 C -0.150 4.150 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.135 0.865 30 H 0.162 0.838 31 H 0.030 0.970 32 H 0.091 0.909 33 H 0.260 0.740 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -8.541 -2.332 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.092 3.908 4 C -0.268 4.268 5 C -0.028 4.028 6 N -0.112 5.112 7 C -0.022 4.022 8 C 0.362 3.638 9 O -0.427 6.427 10 N -0.305 5.305 11 C 0.107 3.893 12 C -0.539 4.539 13 H 0.071 0.929 14 C -0.132 4.132 15 N -0.528 5.528 16 Si 0.713 3.287 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.048 4.048 21 C 0.375 3.625 22 F -0.161 7.161 23 F -0.171 7.171 24 F -0.160 7.160 25 C -0.172 4.172 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.179 0.821 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.447 -8.302 -2.349 8.969 hybrid contribution -1.075 -0.145 0.810 1.354 sum -3.522 -8.447 -1.539 9.281 Atomic orbital electron populations 1.23073 0.78231 1.03902 1.01592 1.86042 1.21480 1.26481 1.88555 1.19073 0.92041 0.84471 0.95241 1.22431 1.01230 0.93553 1.09546 1.22903 0.90775 0.96651 0.92457 1.68830 1.05818 1.27951 1.08578 1.20847 0.94368 0.88595 0.98381 1.17893 0.86374 0.83007 0.76556 1.90720 1.63725 1.37031 1.51262 1.48190 1.04128 1.09491 1.68709 1.20364 0.91128 0.78912 0.98905 1.21236 1.31009 1.09890 0.91769 0.92897 1.24730 0.95857 0.96399 0.96187 1.69935 1.36090 1.18195 1.28564 0.86660 0.78238 0.78491 0.85285 1.20064 1.21131 1.21136 1.22492 0.85051 1.07515 0.89735 1.21536 0.74691 0.74135 0.92156 1.93200 1.84413 1.62876 1.75633 1.93139 1.30931 1.95948 1.97113 1.93202 1.90594 1.40879 1.91345 1.21279 0.91764 0.99464 1.04707 0.92482 0.88225 0.92473 0.84687 0.82077 0.95160 0.89182 0.93042 0.85520 0.86594 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.84 101.05 0.99 1.23 16 2 O -0.31 -4.23 10.51 -18.96 -0.20 -4.43 16 3 C 0.14 2.23 6.73 -38.85 -0.26 1.97 16 4 C -0.25 -3.53 9.11 -39.19 -0.36 -3.89 16 5 C 0.13 2.25 11.17 -17.62 -0.20 2.06 16 6 N -0.40 -8.20 4.97 -9.87 -0.05 -8.24 16 7 C 0.12 2.34 6.62 -83.04 -0.55 1.79 16 8 C 0.57 12.20 7.08 -12.18 -0.09 12.12 16 9 O -0.55 -12.00 15.11 5.35 0.08 -11.91 16 10 N -0.58 -12.01 2.40 -176.05 -0.42 -12.43 16 11 C 0.22 5.26 4.61 -5.19 -0.02 5.23 16 12 C -0.50 -12.58 7.94 -34.44 -0.27 -12.85 16 13 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 16 Si 0.88 20.25 29.54 -169.99 -5.02 15.23 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 20 C 0.08 1.38 5.41 -4.04 -0.02 1.35 16 21 C 0.43 7.45 3.29 37.16 0.12 7.57 16 22 F -0.18 -3.33 16.94 2.25 0.04 -3.29 16 23 F -0.19 -2.99 17.32 2.25 0.04 -2.95 16 24 F -0.18 -3.37 15.87 2.25 0.04 -3.33 16 25 C -0.15 -2.66 9.60 -38.89 -0.37 -3.04 16 26 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16 29 H 0.14 1.45 6.45 -52.49 -0.34 1.12 16 30 H 0.16 2.60 8.06 -52.49 -0.42 2.18 16 31 H 0.03 0.75 7.85 -51.93 -0.41 0.34 16 32 H 0.09 2.22 5.26 -52.18 -0.27 1.95 16 33 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.13 2.00 8.04 -51.93 -0.42 1.59 16 35 H 0.12 1.88 7.51 -51.93 -0.39 1.49 16 36 H 0.15 2.53 7.66 -52.49 -0.40 2.13 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -29.53 324.63 -4.42 -33.95 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.42 Total: 0.12 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: -1.12 Total: 15.24 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.26 Total: -43.51 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.12 Total: -16.34 kcal Atomic # 9 Polarization: -9.68 SS G_CDS: 0.11 Total: -9.57 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.53 -4.42 -33.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177626304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.339 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds