Wall clock time and date at job start Tue Mar 31 2020 12:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35724 * 116.99712 * 2 1 4 4 C 1.38896 * 119.93610 * 359.96811 * 3 2 1 5 5 C 1.37727 * 120.15938 * 179.76861 * 4 3 2 6 6 C 1.39806 * 120.03429 * 0.51488 * 5 4 3 7 7 C 1.47476 * 120.06782 * 179.76544 * 6 5 4 8 8 O 1.21510 * 120.00092 * 179.72706 * 7 6 5 9 9 O 1.34743 * 119.99944 * 359.72111 * 7 6 5 10 10 C 1.45206 * 117.00060 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47091 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.46999 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99508 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47483 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47055 * 119.99952 * 16 14 12 19 19 H 1.48497 * 109.46761 * 239.99763 * 16 14 12 20 20 C 1.39716 * 119.86641 * 359.48982 * 6 5 4 21 21 C 1.38264 * 119.83795 * 0.25335 * 20 6 5 22 22 N 1.40370 * 120.01521 * 179.97438 * 21 20 6 23 23 C 1.35033 * 127.38759 * 359.70762 * 22 21 20 24 24 N 1.30751 * 107.27804 * 179.87543 * 23 22 21 25 25 N 1.28423 * 110.64329 * 0.40545 * 24 23 22 26 26 N 1.28951 * 110.19434 * 359.74547 * 25 24 23 27 27 H 1.09005 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47320 * 300.00428 * 1 2 3 29 29 H 1.09004 * 109.47144 * 60.01001 * 1 2 3 30 30 H 1.07991 * 119.91471 * 0.05135 * 4 3 2 31 31 H 1.08006 * 119.97940 * 180.27733 * 5 4 3 32 32 H 1.09001 * 109.47157 * 299.99959 * 10 9 7 33 33 H 1.09004 * 109.47122 * 60.00093 * 10 9 7 34 34 H 1.08992 * 109.47056 * 300.00206 * 11 10 9 35 35 H 1.09004 * 109.47006 * 60.00090 * 11 10 9 36 36 H 0.96999 * 119.99830 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.08298 * 180.27312 * 20 6 5 38 38 H 1.08001 * 126.35552 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2872 2.3733 -0.0007 5 6 1.9076 3.6029 0.0041 6 6 3.3034 3.6825 -0.0012 7 6 3.9685 4.9988 -0.0013 8 8 5.1817 5.0665 -0.0009 9 8 3.2308 6.1263 -0.0019 10 6 3.9525 7.3863 -0.0025 11 6 2.9543 8.5459 -0.0038 12 6 3.7034 9.8535 -0.0038 13 1 4.7834 9.8572 -0.0034 14 6 3.0100 11.0452 -0.0044 15 7 1.6948 11.0407 -0.0054 16 14 3.9385 12.6661 -0.0051 17 1 5.3994 12.3997 -0.0044 18 1 3.5772 13.4430 -1.2180 19 1 3.5771 13.4441 1.2070 20 6 4.0670 2.5125 -0.0006 21 6 3.4386 1.2809 0.0000 22 7 4.2021 0.1030 0.0000 23 6 5.5484 -0.0015 -0.0058 24 7 5.8390 -1.2762 -0.0006 25 7 4.7679 -1.9848 -0.0003 26 7 3.7289 -1.2210 0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 0.2090 2.3140 -0.0004 31 1 1.3155 4.5062 0.0081 32 1 4.5789 7.4467 0.8875 33 1 4.5791 7.4457 -0.8925 34 1 2.3283 8.4853 -0.8940 35 1 2.3275 8.4866 0.8860 36 1 1.2070 11.8791 -0.0062 37 1 5.1455 2.5698 -0.0002 38 1 6.2539 0.8162 -0.0112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181546818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:33 Heat of formation + Delta-G solvation = 28.493030 kcal Electronic energy + Delta-G solvation = -25079.464296 eV Core-core repulsion = 21118.980777 eV Total energy + Delta-G solvation = -3960.483519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.45069 -41.03200 -39.95423 -38.04726 -36.24373 -35.50841 -33.44059 -32.54836 -31.22715 -30.89340 -30.17862 -28.06095 -25.62136 -25.24758 -24.26101 -23.18124 -22.38952 -21.18127 -20.71928 -19.36571 -18.29680 -17.39487 -17.00882 -16.70679 -16.44059 -16.25392 -16.22733 -16.06961 -15.86714 -14.86192 -14.61830 -14.51981 -13.86589 -13.67894 -13.40617 -13.29329 -13.00110 -12.63193 -12.44162 -12.41972 -12.03180 -11.71048 -11.62751 -11.32683 -11.27826 -11.14420 -10.86951 -10.81219 -10.74125 -10.48582 -9.79293 -9.75506 -9.52261 -9.38072 -8.75230 -8.52713 -6.18821 -4.23250 -0.03875 0.27861 1.16363 1.38228 1.99632 2.38509 2.52186 2.87029 3.22182 3.26967 3.30186 3.34659 3.63508 3.91077 4.15927 4.25916 4.32031 4.49694 4.58142 4.66326 4.69109 4.71285 4.92600 4.99727 5.05886 5.13151 5.18407 5.45633 5.60340 5.72346 5.79124 5.95015 5.96656 6.00192 6.50900 6.65051 6.75201 7.44360 7.50981 7.76200 7.96970 8.13648 8.14307 8.82426 9.41820 10.92674 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.002379 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.662550 B =11769.252561 C =12886.163547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.285 6.285 3 C 0.177 3.823 4 C -0.204 4.204 5 C -0.004 4.004 6 C -0.133 4.133 7 C 0.506 3.494 8 O -0.512 6.512 9 O -0.350 6.350 10 C 0.076 3.924 11 C 0.024 3.976 12 C -0.527 4.527 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.021 4.021 21 C 0.077 3.923 22 N -0.317 5.317 23 C 0.220 3.780 24 N -0.330 5.330 25 N -0.048 5.048 26 N -0.051 5.051 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.263 0.737 37 H 0.157 0.843 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 -20.820 0.000 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.195 6.195 3 C 0.127 3.873 4 C -0.224 4.224 5 C -0.023 4.023 6 C -0.135 4.135 7 C 0.350 3.650 8 O -0.402 6.402 9 O -0.266 6.266 10 C 0.004 3.996 11 C -0.013 4.013 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.042 4.042 21 C -0.016 4.016 22 N -0.107 5.107 23 C -0.077 4.077 24 N -0.179 5.179 25 N -0.044 5.044 26 N -0.037 5.037 27 H 0.126 0.874 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.174 0.826 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -2.565 -22.293 0.007 22.440 hybrid contribution 0.352 2.208 -0.001 2.236 sum -2.214 -20.085 0.006 20.207 Atomic orbital electron populations 1.23285 0.77226 1.04971 1.01977 1.86315 1.22176 1.24707 1.86335 1.18899 0.89643 0.86203 0.92528 1.21256 1.01190 0.90730 1.09177 1.21620 0.93339 0.98667 0.88683 1.18884 0.93572 0.90597 1.10473 1.20683 0.85557 0.85295 0.73443 1.90825 1.14883 1.88287 1.46245 1.86559 1.41905 1.15636 1.82524 1.23745 0.96563 0.78025 1.01269 1.19187 0.94145 0.89007 0.98931 1.20999 0.93247 0.90011 1.52253 0.92149 1.24981 0.94921 0.99446 0.94782 1.69972 1.05992 1.27088 1.49749 0.86414 0.80052 0.83104 0.77751 1.19557 1.20798 1.20804 1.20721 1.01356 0.87851 0.94277 1.16498 0.87408 0.82730 1.14936 1.48881 1.05942 1.06748 1.49116 1.27508 0.84500 0.98383 0.97294 1.74483 1.21497 1.00363 1.21558 1.78087 0.92566 1.23151 1.10552 1.82916 1.18163 0.82434 1.20173 0.87422 0.91869 0.91861 0.82940 0.82311 0.91995 0.92000 0.95283 0.95287 0.92709 0.82566 0.74421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.29 -2.60 8.65 -18.88 -0.16 -2.76 16 3 C 0.18 1.63 6.71 -38.85 -0.26 1.37 16 4 C -0.20 -1.55 9.01 -39.52 -0.36 -1.90 16 5 C 0.00 -0.04 9.60 -39.18 -0.38 -0.42 16 6 C -0.13 -1.50 5.87 -105.00 -0.62 -2.11 16 7 C 0.51 7.72 7.89 34.49 0.27 7.99 16 8 O -0.51 -8.86 16.13 -19.27 -0.31 -9.17 16 9 O -0.35 -6.13 9.46 -40.61 -0.38 -6.51 16 10 C 0.08 1.55 5.41 37.16 0.20 1.75 16 11 C 0.02 0.60 5.35 -27.88 -0.15 0.45 16 12 C -0.53 -14.13 9.11 -34.44 -0.31 -14.45 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 16 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.02 -0.20 9.03 -39.02 -0.35 -0.55 16 21 C 0.08 0.77 6.71 -83.45 -0.56 0.21 16 22 N -0.32 -3.43 3.86 -11.68 -0.05 -3.47 16 23 C 0.22 2.03 12.15 -90.17 -1.10 0.93 16 24 N -0.33 -4.01 12.15 29.64 0.36 -3.65 16 25 N -0.05 -0.66 13.39 60.35 0.81 0.15 16 26 N -0.05 -0.67 12.08 60.35 0.73 0.06 16 27 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 29 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 30 H 0.15 0.72 6.27 -52.49 -0.33 0.39 16 31 H 0.16 1.40 7.60 -52.48 -0.40 1.00 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.16 1.24 6.46 -52.49 -0.34 0.90 16 38 H 0.24 1.04 7.19 -52.49 -0.38 0.67 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -33.52 341.55 -4.75 -38.27 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -3.89 Total: -5.02 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.71 Total: -4.08 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 2.59 Total: -31.53 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.86 Total: -18.44 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.52 -4.75 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181546818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.762 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds