Wall clock time and date at job start Tue Mar 31 2020 12:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35724 * 116.99712 * 2 1 4 4 C 1.38896 * 119.93610 * 359.96811 * 3 2 1 5 5 C 1.37727 * 120.15938 * 179.76861 * 4 3 2 6 6 C 1.39806 * 120.03429 * 0.51488 * 5 4 3 7 7 C 1.47476 * 120.06782 * 179.76544 * 6 5 4 8 8 O 1.21510 * 120.00092 * 179.72706 * 7 6 5 9 9 O 1.34743 * 119.99944 * 359.72111 * 7 6 5 10 10 C 1.45206 * 117.00060 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47091 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.46999 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99508 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47483 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47055 * 119.99952 * 16 14 12 19 19 H 1.48497 * 109.46761 * 239.99763 * 16 14 12 20 20 C 1.39716 * 119.86641 * 359.48982 * 6 5 4 21 21 C 1.38264 * 119.83795 * 0.25335 * 20 6 5 22 22 N 1.40370 * 120.01521 * 179.97438 * 21 20 6 23 23 C 1.35033 * 127.38759 * 359.70762 * 22 21 20 24 24 N 1.30751 * 107.27804 * 179.87543 * 23 22 21 25 25 N 1.28423 * 110.64329 * 0.40545 * 24 23 22 26 26 N 1.28951 * 110.19434 * 359.74547 * 25 24 23 27 27 H 1.09005 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47320 * 300.00428 * 1 2 3 29 29 H 1.09004 * 109.47144 * 60.01001 * 1 2 3 30 30 H 1.07991 * 119.91471 * 0.05135 * 4 3 2 31 31 H 1.08006 * 119.97940 * 180.27733 * 5 4 3 32 32 H 1.09001 * 109.47157 * 299.99959 * 10 9 7 33 33 H 1.09004 * 109.47122 * 60.00093 * 10 9 7 34 34 H 1.08992 * 109.47056 * 300.00206 * 11 10 9 35 35 H 1.09004 * 109.47006 * 60.00090 * 11 10 9 36 36 H 0.96999 * 119.99830 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.08298 * 180.27312 * 20 6 5 38 38 H 1.08001 * 126.35552 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2872 2.3733 -0.0007 5 6 1.9076 3.6029 0.0041 6 6 3.3034 3.6825 -0.0012 7 6 3.9685 4.9988 -0.0013 8 8 5.1817 5.0665 -0.0009 9 8 3.2308 6.1263 -0.0019 10 6 3.9525 7.3863 -0.0025 11 6 2.9543 8.5459 -0.0038 12 6 3.7034 9.8535 -0.0038 13 1 4.7834 9.8572 -0.0034 14 6 3.0100 11.0452 -0.0044 15 7 1.6948 11.0407 -0.0054 16 14 3.9385 12.6661 -0.0051 17 1 5.3994 12.3997 -0.0044 18 1 3.5772 13.4430 -1.2180 19 1 3.5771 13.4441 1.2070 20 6 4.0670 2.5125 -0.0006 21 6 3.4386 1.2809 0.0000 22 7 4.2021 0.1030 0.0000 23 6 5.5484 -0.0015 -0.0058 24 7 5.8390 -1.2762 -0.0006 25 7 4.7679 -1.9848 -0.0003 26 7 3.7289 -1.2210 0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 0.2090 2.3140 -0.0004 31 1 1.3155 4.5062 0.0081 32 1 4.5789 7.4467 0.8875 33 1 4.5791 7.4457 -0.8925 34 1 2.3283 8.4853 -0.8940 35 1 2.3275 8.4866 0.8860 36 1 1.2070 11.8791 -0.0062 37 1 5.1455 2.5698 -0.0002 38 1 6.2539 0.8162 -0.0112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181546818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:32 Heat of formation + Delta-G solvation = 8.425611 kcal Electronic energy + Delta-G solvation = -25080.334484 eV Core-core repulsion = 21118.980777 eV Total energy + Delta-G solvation = -3961.353707 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.29623 -41.88665 -41.04894 -38.83000 -37.60430 -36.33093 -35.41543 -33.40214 -32.49358 -31.81618 -31.41221 -28.61997 -27.16152 -26.18983 -25.28405 -24.15410 -23.28291 -22.76408 -21.80339 -20.24134 -19.16602 -18.58788 -18.08486 -17.83212 -17.53934 -17.49562 -17.27843 -16.85376 -16.78775 -16.48437 -15.52650 -15.18719 -15.15023 -14.79854 -14.36738 -14.30529 -14.23219 -13.97822 -13.54699 -13.16639 -13.14195 -12.93501 -12.74825 -12.60431 -12.56879 -12.29722 -12.18928 -12.11562 -11.91986 -11.61170 -11.53662 -11.45461 -11.35588 -10.59491 -10.22938 -9.50561 -8.25755 -6.37622 -0.80118 -0.53056 0.38411 0.60143 1.14065 1.37519 1.42727 1.43082 1.55433 1.65625 1.97650 2.41129 2.41177 2.90205 3.09533 3.25166 3.48605 3.54845 3.58262 3.81724 3.94395 4.01705 4.27498 4.27582 4.30249 4.33242 4.37149 4.39922 4.61461 4.74459 4.75183 4.90400 4.98852 5.10503 5.27108 5.30220 5.51280 5.52411 5.76427 6.06065 6.09196 6.65489 6.76792 7.26949 7.32116 8.86785 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.002379 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.662550 B =11769.252561 C =12886.163547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.304 6.304 3 C 0.181 3.819 4 C -0.191 4.191 5 C 0.001 3.999 6 C -0.152 4.152 7 C 0.508 3.492 8 O -0.535 6.535 9 O -0.355 6.355 10 C 0.092 3.908 11 C 0.030 3.970 12 C -0.547 4.547 13 H 0.064 0.936 14 C 0.007 3.993 15 N -0.926 5.926 16 Si 0.969 3.031 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.007 4.007 21 C 0.064 3.936 22 N -0.318 5.318 23 C 0.232 3.768 24 N -0.354 5.354 25 N -0.071 5.071 26 N -0.070 5.070 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.185 0.815 31 H 0.163 0.837 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.267 0.733 37 H 0.172 0.828 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 -20.818 -0.002 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.215 6.215 3 C 0.130 3.870 4 C -0.210 4.210 5 C -0.018 4.018 6 C -0.154 4.154 7 C 0.354 3.646 8 O -0.427 6.427 9 O -0.272 6.272 10 C 0.019 3.981 11 C -0.007 4.007 12 C -0.585 4.585 13 H 0.083 0.917 14 C -0.192 4.192 15 N -0.565 5.565 16 Si 0.793 3.207 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.028 4.028 21 C -0.029 4.029 22 N -0.108 5.108 23 C -0.063 4.063 24 N -0.203 5.203 25 N -0.066 5.066 26 N -0.056 5.056 27 H 0.136 0.864 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.202 0.798 31 H 0.180 0.820 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.189 0.811 38 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -2.587 -22.318 0.005 22.467 hybrid contribution 0.259 2.092 -0.001 2.108 sum -2.328 -20.226 0.005 20.359 Atomic orbital electron populations 1.23613 0.75058 1.06325 1.03500 1.86314 1.24507 1.24782 1.85854 1.19135 0.89658 0.86864 0.91331 1.21480 1.02578 0.89244 1.07659 1.21707 0.92552 0.99596 0.87926 1.18632 0.94396 0.88723 1.13644 1.21263 0.85409 0.85617 0.72291 1.90807 1.15852 1.88501 1.47551 1.86528 1.41912 1.15514 1.83196 1.23214 0.95123 0.78439 1.01308 1.18984 0.94346 0.90416 0.96939 1.21410 0.93725 0.91288 1.52105 0.91730 1.25899 0.95781 1.03234 0.94252 1.70081 1.07561 1.28237 1.50599 0.85336 0.78999 0.78446 0.77905 1.18660 1.20234 1.20242 1.20737 1.02014 0.87054 0.92947 1.16612 0.87907 0.82391 1.16027 1.48910 1.06549 1.06388 1.48933 1.28326 0.84517 0.98496 0.95008 1.74419 1.21547 1.01678 1.22673 1.78066 0.93102 1.23976 1.11426 1.82856 1.18405 0.83366 1.20960 0.86385 0.90284 0.90277 0.79780 0.81983 0.91917 0.91924 0.97229 0.97236 0.92404 0.81087 0.70197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.30 -4.96 8.65 -90.46 -0.78 -5.74 16 3 C 0.18 2.93 6.71 22.74 0.15 3.08 16 4 C -0.19 -2.36 9.01 22.31 0.20 -2.16 16 5 C 0.00 0.01 9.60 22.53 0.22 0.23 16 6 C -0.15 -3.20 5.87 -20.11 -0.12 -3.31 16 7 C 0.51 15.13 7.89 70.26 0.55 15.68 16 8 O -0.54 -18.12 16.13 19.81 0.32 -17.80 16 9 O -0.36 -12.38 9.46 -56.54 -0.53 -12.91 16 10 C 0.09 3.76 5.41 71.98 0.39 4.15 16 11 C 0.03 1.51 5.35 29.85 0.16 1.67 16 12 C -0.55 -29.53 9.11 25.60 0.23 -29.30 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 14 C 0.01 0.40 5.46 84.66 0.46 0.87 16 15 N -0.93 -53.22 13.29 21.45 0.28 -52.94 16 16 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 C -0.01 -0.11 9.03 22.63 0.20 0.09 16 21 C 0.06 1.14 6.71 38.09 0.26 1.40 16 22 N -0.32 -6.43 3.86 -190.86 -0.74 -7.17 16 23 C 0.23 3.88 12.15 180.19 2.19 6.07 16 24 N -0.35 -8.33 12.15 -60.14 -0.73 -9.06 16 25 N -0.07 -1.91 13.39 37.02 0.50 -1.42 16 26 N -0.07 -1.78 12.08 37.02 0.45 -1.33 16 27 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.08 0.32 7.65 -2.39 -0.02 0.30 16 29 H 0.08 0.32 7.65 -2.39 -0.02 0.30 16 30 H 0.19 1.05 6.27 -2.92 -0.02 1.03 16 31 H 0.16 2.60 7.60 -2.91 -0.02 2.57 16 32 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.17 2.32 6.46 -2.91 -0.02 2.30 16 38 H 0.28 1.63 7.19 -2.91 -0.02 1.61 16 Total: -1.00 -73.24 341.55 7.92 -65.33 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: 1.11 Total: -0.72 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.01 Total: -0.36 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -0.24 Total: -71.91 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.00 Total: -36.45 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -73.24 7.92 -65.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181546818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.753 kcal (2) G-P(sol) polarization free energy of solvation -73.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds