Wall clock time and date at job start Tue Mar 31 2020 12:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 H 1.09001 * 109.47044 * 54.99755 * 3 2 1 5 5 C 1.50700 * 109.47242 * 174.99591 * 3 2 1 6 6 H 1.08001 * 119.99614 * 119.99936 * 5 3 2 7 7 C 1.37875 * 120.00221 * 300.00310 * 5 3 2 8 8 N 1.31506 * 119.99985 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99712 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47244 * 60.00484 * 9 7 5 11 11 H 1.48508 * 109.46707 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47457 * 300.00174 * 9 7 5 13 13 N 1.46496 * 109.47203 * 295.00106 * 3 2 1 14 14 C 1.34774 * 119.99913 * 84.99816 * 13 3 2 15 15 O 1.21612 * 120.00155 * 0.02562 * 14 13 3 16 16 C 1.47395 * 120.00094 * 180.02562 * 14 13 3 17 17 N 1.31575 * 126.81798 * 0.21477 * 16 14 13 18 18 N 1.28388 * 111.96490 * 180.19971 * 17 16 14 19 19 H 0.97001 * 124.37681 * 179.87739 * 18 17 16 20 20 C 1.37057 * 111.25288 * 359.60161 * 18 17 16 21 21 C 1.39123 * 134.72551 * 180.25745 * 20 18 17 22 22 C 1.36678 * 119.78667 * 180.02562 * 21 20 18 23 23 C 1.38907 * 120.89290 * 359.95356 * 22 21 20 24 24 N 1.48015 * 119.73898 * 179.97438 * 23 22 21 25 25 O 1.21794 * 119.99946 * 180.02562 * 24 23 22 26 26 O 1.21799 * 120.00053 * 0.02562 * 24 23 22 27 27 C 1.36717 * 120.52006 * 0.02562 * 23 22 21 28 28 C 1.39194 * 119.51463 * 0.02562 * 27 23 22 29 29 H 1.08998 * 109.47199 * 60.00464 * 1 2 3 30 30 H 1.09002 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47439 * 299.99704 * 1 2 3 32 32 H 1.09003 * 109.47200 * 240.00319 * 2 1 3 33 33 H 1.09005 * 109.47323 * 120.00202 * 2 1 3 34 34 H 0.97003 * 120.00561 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99887 * 264.99607 * 13 3 2 36 36 H 1.08003 * 120.10363 * 359.97438 * 21 20 18 37 37 H 1.07994 * 119.55457 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.23925 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3810 11 1 6.3978 0.2158 2.6499 12 1 6.5967 0.1455 0.2344 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3414 2.6325 -0.4315 16 6 0.0449 3.3229 -2.6265 17 7 0.7722 3.4319 -3.7175 18 7 0.1528 4.0659 -4.6463 19 1 0.5222 4.2499 -5.5241 20 6 -1.1002 4.4439 -4.2393 21 6 -2.1571 5.1278 -4.8315 22 6 -3.3065 5.3449 -4.1245 23 6 -3.4370 4.8906 -2.8183 24 7 -4.6930 5.1404 -2.0761 25 8 -4.8123 4.7445 -0.9304 26 8 -5.6072 5.7417 -2.6109 27 6 -2.4140 4.2155 -2.2126 28 6 -1.2343 3.9846 -2.9144 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8292 -0.0610 2.9500 35 1 2.2719 2.1232 -1.9977 36 1 -2.0693 5.4867 -5.8464 37 1 -4.1245 5.8766 -4.5877 38 1 -2.5205 3.8639 -1.1969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183844782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:42 Heat of formation + Delta-G solvation = 45.930425 kcal Electronic energy + Delta-G solvation = -25971.185428 eV Core-core repulsion = 22011.458052 eV Total energy + Delta-G solvation = -3959.727376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.05791 -42.10684 -39.00381 -38.35017 -36.59390 -35.20565 -33.17970 -32.45612 -31.47435 -31.16565 -30.25188 -27.20353 -26.64562 -24.32760 -23.75715 -22.82218 -22.55308 -20.33827 -19.50784 -19.44467 -19.01492 -18.46266 -17.57267 -17.55726 -16.58389 -16.21577 -15.81707 -15.42032 -15.14421 -14.53658 -14.47797 -14.39182 -13.95192 -13.32140 -12.95527 -12.73949 -12.21355 -12.12507 -11.60872 -11.57776 -11.44106 -11.29494 -11.23008 -11.16428 -11.05366 -10.88194 -10.69406 -10.40409 -10.25299 -9.72733 -9.60139 -9.47439 -9.13081 -8.80559 -8.56140 -7.97672 -6.17281 -4.27235 -0.30371 0.30392 1.16992 1.29607 1.61553 2.19625 2.89243 3.22791 3.28359 3.28935 3.49129 3.68431 3.77234 3.99428 4.24067 4.30253 4.45054 4.47920 4.71181 5.14178 5.23144 5.25912 5.31933 5.43945 5.73480 5.79940 6.30623 6.34422 6.40000 6.43951 6.59284 6.97662 7.10959 7.21304 7.31212 7.33007 7.55551 7.59743 7.65910 7.81900 8.10151 8.49168 8.65888 8.90850 9.39570 10.88037 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003192 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.083897 B = 8768.657491 C = 9671.380643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.581 3.419 15 O -0.529 6.529 16 C 0.053 3.947 17 N -0.205 5.205 18 N -0.411 5.411 19 H 0.452 0.548 20 C 0.104 3.896 21 C -0.112 4.112 22 C -0.038 4.038 23 C -0.072 4.072 24 N 0.034 4.966 25 O -0.155 6.155 26 O -0.168 6.168 27 C 0.048 3.952 28 C -0.124 4.124 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.102 0.898 34 H 0.266 0.734 35 H 0.396 0.604 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.528 8.348 -16.689 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.330 5.330 14 C 0.362 3.638 15 O -0.405 6.405 16 C -0.120 4.120 17 N -0.032 5.032 18 N -0.128 5.128 19 H 0.298 0.702 20 C -0.013 4.013 21 C -0.134 4.134 22 C -0.060 4.060 23 C -0.157 4.157 24 N 0.553 4.447 25 O -0.372 6.372 26 O -0.382 6.382 27 C 0.027 3.973 28 C -0.133 4.133 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.360 7.784 -16.578 19.738 hybrid contribution 0.502 0.361 -0.424 0.750 sum -6.858 8.145 -17.002 20.061 Atomic orbital electron populations 1.21858 0.98256 0.98338 1.01212 1.21956 0.92673 0.99511 1.02563 1.18939 0.94545 0.89334 0.80340 0.92771 1.21157 0.90442 1.39494 1.06494 0.92010 1.24864 0.98672 0.94684 0.95295 1.69869 1.35305 1.37279 1.09304 0.86499 0.84724 0.78344 0.77490 1.20163 1.21080 1.20151 1.46460 1.13559 1.53950 1.19076 1.16653 0.83729 0.79569 0.83878 1.90824 1.51645 1.60064 1.37919 1.23604 0.90681 1.02999 0.94729 1.73157 1.22982 1.09790 0.97320 1.43210 1.09871 1.44692 1.15002 0.70196 1.19473 0.88602 0.98625 0.94577 1.19649 0.90436 1.02143 1.01187 1.20399 0.98346 0.96399 0.90854 1.20553 0.87407 1.12796 0.94956 1.43464 1.02037 0.98243 1.00937 1.94601 1.87459 1.53274 1.01874 1.94504 1.32527 1.40100 1.71058 1.20275 0.87794 0.88032 1.01216 1.19177 0.95340 1.05139 0.93645 0.94510 0.95619 0.92850 0.94873 0.87980 0.92377 0.77084 0.83119 0.82312 0.81002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.35 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.73 8.73 -34.44 -0.30 -14.03 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.95 11.29 55.43 0.63 -23.32 16 9 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.68 -13.73 5.02 -56.02 -0.28 -14.01 16 14 C 0.58 11.13 6.38 -12.53 -0.08 11.05 16 15 O -0.53 -11.49 13.54 5.27 0.07 -11.42 16 16 C 0.05 0.81 7.32 -80.76 -0.59 0.22 16 17 N -0.21 -2.59 11.80 34.46 0.41 -2.19 16 18 N -0.41 -3.55 6.85 32.34 0.22 -3.33 16 19 H 0.45 1.91 8.96 -190.49 -1.71 0.21 16 20 C 0.10 1.00 7.38 -84.21 -0.62 0.38 16 21 C -0.11 -0.76 10.03 -39.82 -0.40 -1.16 16 22 C -0.04 -0.32 9.47 -39.90 -0.38 -0.70 16 23 C -0.07 -0.86 6.82 -80.25 -0.55 -1.41 16 24 N 0.03 0.48 4.45 33.81 0.15 0.63 16 25 O -0.16 -2.43 18.41 -29.46 -0.54 -2.97 16 26 O -0.17 -2.29 18.42 -29.46 -0.54 -2.83 16 27 C 0.05 0.64 9.37 -39.78 -0.37 0.27 16 28 C -0.12 -1.65 6.34 -105.06 -0.67 -2.32 16 29 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.40 7.17 8.27 -40.82 -0.34 6.84 16 36 H 0.15 0.42 8.06 -52.48 -0.42 0.00 16 37 H 0.16 0.99 7.58 -52.49 -0.40 0.59 16 38 H 0.17 2.54 7.17 -52.48 -0.38 2.17 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -30.61 333.35 -8.95 -39.56 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.03 Total: 5.25 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -4.03 Total: -5.49 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.12 Total: -42.22 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.01 Total: -17.22 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.61 -8.95 -39.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183844782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.492 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds