Wall clock time and date at job start Tue Mar 31 2020 12:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 H 1.09001 * 109.47044 * 54.99755 * 3 2 1 5 5 C 1.50700 * 109.47242 * 174.99591 * 3 2 1 6 6 H 1.08001 * 119.99614 * 119.99936 * 5 3 2 7 7 C 1.37875 * 120.00221 * 300.00310 * 5 3 2 8 8 N 1.31506 * 119.99985 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99712 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47244 * 60.00484 * 9 7 5 11 11 H 1.48508 * 109.46707 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47457 * 300.00174 * 9 7 5 13 13 N 1.46496 * 109.47203 * 295.00106 * 3 2 1 14 14 C 1.34774 * 119.99913 * 84.99816 * 13 3 2 15 15 O 1.21612 * 120.00155 * 0.02562 * 14 13 3 16 16 C 1.47395 * 120.00094 * 180.02562 * 14 13 3 17 17 N 1.31575 * 126.81798 * 0.21477 * 16 14 13 18 18 N 1.28388 * 111.96490 * 180.19971 * 17 16 14 19 19 H 0.97001 * 124.37681 * 179.87739 * 18 17 16 20 20 C 1.37057 * 111.25288 * 359.60161 * 18 17 16 21 21 C 1.39123 * 134.72551 * 180.25745 * 20 18 17 22 22 C 1.36678 * 119.78667 * 180.02562 * 21 20 18 23 23 C 1.38907 * 120.89290 * 359.95356 * 22 21 20 24 24 N 1.48015 * 119.73898 * 179.97438 * 23 22 21 25 25 O 1.21794 * 119.99946 * 180.02562 * 24 23 22 26 26 O 1.21799 * 120.00053 * 0.02562 * 24 23 22 27 27 C 1.36717 * 120.52006 * 0.02562 * 23 22 21 28 28 C 1.39194 * 119.51463 * 0.02562 * 27 23 22 29 29 H 1.08998 * 109.47199 * 60.00464 * 1 2 3 30 30 H 1.09002 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47439 * 299.99704 * 1 2 3 32 32 H 1.09003 * 109.47200 * 240.00319 * 2 1 3 33 33 H 1.09005 * 109.47323 * 120.00202 * 2 1 3 34 34 H 0.97003 * 120.00561 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99887 * 264.99607 * 13 3 2 36 36 H 1.08003 * 120.10363 * 359.97438 * 21 20 18 37 37 H 1.07994 * 119.55457 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.23925 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3810 11 1 6.3978 0.2158 2.6499 12 1 6.5967 0.1455 0.2344 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3414 2.6325 -0.4315 16 6 0.0449 3.3229 -2.6265 17 7 0.7722 3.4319 -3.7175 18 7 0.1528 4.0659 -4.6463 19 1 0.5222 4.2499 -5.5241 20 6 -1.1002 4.4439 -4.2393 21 6 -2.1571 5.1278 -4.8315 22 6 -3.3065 5.3449 -4.1245 23 6 -3.4370 4.8906 -2.8183 24 7 -4.6930 5.1404 -2.0761 25 8 -4.8123 4.7445 -0.9304 26 8 -5.6072 5.7417 -2.6109 27 6 -2.4140 4.2155 -2.2126 28 6 -1.2343 3.9846 -2.9144 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8292 -0.0610 2.9500 35 1 2.2719 2.1232 -1.9977 36 1 -2.0693 5.4867 -5.8464 37 1 -4.1245 5.8766 -4.5877 38 1 -2.5205 3.8639 -1.1969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183844782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:42 Heat of formation + Delta-G solvation = 25.206989 kcal Electronic energy + Delta-G solvation = -25972.084064 eV Core-core repulsion = 22011.458052 eV Total energy + Delta-G solvation = -3960.626012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.99267 -43.16791 -40.59665 -39.22179 -37.68647 -37.01174 -34.47736 -33.99308 -32.83062 -32.38592 -31.31025 -29.03359 -27.74114 -25.76138 -24.77789 -24.33502 -23.54337 -21.88987 -21.17433 -20.48444 -19.99810 -19.51994 -18.91052 -18.63545 -17.95497 -17.29676 -17.19914 -17.00857 -16.20525 -16.08780 -16.01190 -15.36081 -14.98396 -14.65550 -14.60142 -13.96018 -13.78152 -13.51604 -13.18847 -13.02836 -12.94213 -12.66475 -12.65913 -12.41661 -12.31438 -12.30277 -12.20479 -12.08609 -11.67309 -11.56740 -11.12548 -11.07324 -10.54169 -10.48628 -9.83404 -9.55397 -8.16582 -6.34185 -1.33933 -0.51054 0.13848 0.32228 0.56888 1.41672 1.45676 1.47033 1.54923 2.01365 2.17676 2.30768 2.45176 2.92469 2.98619 3.13007 3.32542 3.52840 3.69934 3.89540 4.10467 4.44424 4.48056 4.54893 4.60341 4.65131 4.69848 4.75197 5.01084 5.04482 5.23714 5.29966 5.40433 5.47799 5.57512 5.72865 5.78395 5.88176 6.13763 6.39254 6.47592 6.71068 6.85418 7.25793 7.41860 8.88637 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003192 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.083897 B = 8768.657491 C = 9671.380643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.685 5.685 14 C 0.581 3.419 15 O -0.566 6.566 16 C 0.011 3.989 17 N -0.190 5.190 18 N -0.377 5.377 19 H 0.476 0.524 20 C 0.115 3.885 21 C -0.071 4.071 22 C -0.037 4.037 23 C -0.068 4.068 24 N 0.033 4.967 25 O -0.229 6.229 26 O -0.128 6.128 27 C 0.019 3.981 28 C -0.143 4.143 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.266 0.734 35 H 0.406 0.594 36 H 0.213 0.787 37 H 0.194 0.806 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 9.988 -21.597 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.333 5.333 14 C 0.365 3.635 15 O -0.444 6.444 16 C -0.160 4.160 17 N -0.020 5.020 18 N -0.099 5.099 19 H 0.328 0.672 20 C -0.002 4.002 21 C -0.092 4.092 22 C -0.059 4.059 23 C -0.153 4.153 24 N 0.548 4.452 25 O -0.428 6.428 26 O -0.356 6.356 27 C -0.003 4.003 28 C -0.152 4.152 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.230 0.770 37 H 0.211 0.789 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.881 9.369 -21.402 24.355 hybrid contribution 0.271 -0.001 0.856 0.898 sum -6.611 9.368 -20.546 23.529 Atomic orbital electron populations 1.21697 0.97012 0.99337 1.00249 1.21799 0.93686 0.98920 1.01568 1.18502 0.93947 0.89316 0.80709 0.97628 1.21506 0.91189 1.39355 1.06878 0.91060 1.25736 1.03281 0.94273 0.94928 1.70026 1.37157 1.38066 1.09801 0.85434 0.79106 0.78433 0.77581 1.19711 1.21174 1.18900 1.46161 1.14497 1.54551 1.18077 1.17058 0.82682 0.78710 0.85066 1.90800 1.52497 1.61190 1.39902 1.22751 0.92733 1.06313 0.94209 1.73037 1.22887 1.09016 0.97095 1.43259 1.09285 1.42348 1.15023 0.67209 1.19663 0.89328 0.98396 0.92821 1.20290 0.87675 0.98422 1.02862 1.20881 1.00090 0.96071 0.88840 1.20780 0.85705 1.12782 0.96055 1.43795 1.02723 0.97816 1.00819 1.94633 1.88464 1.56358 1.03348 1.94442 1.32843 1.37916 1.70369 1.20022 0.89313 0.90478 1.00507 1.19198 0.94423 1.05849 0.95698 0.94146 0.93438 0.95155 0.93968 0.90577 0.92487 0.75845 0.77046 0.78928 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.16 2.24 44.25 0.10 14.26 16 4 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 5 C -0.55 -28.88 8.73 25.60 0.22 -28.66 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -51.63 11.29 21.45 0.24 -51.38 16 9 Si 0.97 41.56 29.54 68.60 2.03 43.59 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 13 N -0.68 -28.69 5.02 -449.41 -2.26 -30.94 16 14 C 0.58 23.59 6.38 86.65 0.55 24.14 16 15 O -0.57 -26.88 13.54 -4.07 -0.06 -26.94 16 16 C 0.01 0.32 7.32 43.86 0.32 0.65 16 17 N -0.19 -4.41 11.80 -44.88 -0.53 -4.93 16 18 N -0.38 -4.89 6.85 -51.60 -0.35 -5.24 16 19 H 0.48 1.27 8.96 -220.03 -1.97 -0.70 16 20 C 0.11 1.72 7.38 39.18 0.29 2.01 16 21 C -0.07 -0.51 10.03 22.12 0.22 -0.29 16 22 C -0.04 -0.45 9.47 22.06 0.21 -0.24 16 23 C -0.07 -1.56 6.82 36.18 0.25 -1.31 16 24 N 0.03 0.93 4.45 -46.93 -0.21 0.72 16 25 O -0.23 -7.81 18.41 18.89 0.35 -7.46 16 26 O -0.13 -3.24 18.42 18.89 0.35 -2.89 16 27 C 0.02 0.52 9.37 22.14 0.21 0.73 16 28 C -0.14 -3.74 6.34 -20.15 -0.13 -3.86 16 29 H 0.04 1.77 5.65 -2.39 -0.01 1.75 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 4.15 5.95 -2.38 -0.01 4.14 16 34 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.41 14.95 8.27 -92.71 -0.77 14.19 16 36 H 0.21 -0.87 8.06 -2.91 -0.02 -0.89 16 37 H 0.19 1.13 7.58 -2.91 -0.02 1.10 16 38 H 0.14 4.74 7.17 -2.91 -0.02 4.72 16 Total: -1.00 -74.25 333.35 1.45 -72.80 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -1.58 Total: 14.65 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 3.47 Total: -1.97 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -3.10 Total: -91.79 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: 0.64 Total: -37.28 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -74.25 1.45 -72.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183844782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.009 kcal (2) G-P(sol) polarization free energy of solvation -74.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds