Wall clock time and date at job start Tue Mar 31 2020 11:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35725 * 116.99976 * 2 1 4 4 C 1.41856 * 126.78944 * 180.02562 * 3 2 1 5 5 C 1.36667 * 103.81420 * 179.97438 * 4 3 2 6 6 C 1.47534 * 126.87865 * 180.02562 * 5 4 3 7 7 O 1.21583 * 120.00172 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99946 * 180.27762 * 6 5 4 9 9 C 1.46500 * 120.00037 * 179.72193 * 8 6 5 10 10 C 1.50703 * 109.47209 * 179.97438 * 9 8 6 11 11 C 1.38300 * 119.92801 * 269.72897 * 10 9 8 12 12 C 1.38098 * 120.06481 * 179.72385 * 11 10 9 13 13 C 1.38878 * 119.93168 * 0.56722 * 12 11 10 14 14 O 1.35756 * 120.06842 * 179.67898 * 13 12 11 15 15 C 1.34829 * 116.99743 * 174.48726 * 14 13 12 16 16 H 1.08006 * 120.00014 * 5.06129 * 15 14 13 17 17 C 1.38650 * 120.00295 * 185.06073 * 15 14 13 18 18 N 1.31559 * 119.99575 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00664 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46983 * 89.99574 * 19 17 15 21 21 H 1.48494 * 109.47360 * 209.99769 * 19 17 15 22 22 H 1.48502 * 109.46902 * 329.99946 * 19 17 15 23 23 C 1.38876 * 119.86160 * 359.70567 * 13 12 11 24 24 C 1.38100 * 119.93052 * 0.02562 * 23 13 12 25 25 O 1.34662 * 106.24082 * 0.26307 * 5 4 3 26 26 N 1.20879 * 111.63023 * 359.52298 * 25 5 4 27 27 H 1.08999 * 109.46922 * 299.99744 * 1 2 3 28 28 H 1.09000 * 109.47335 * 60.00258 * 1 2 3 29 29 H 1.08998 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.08002 * 128.09168 * 359.94476 * 4 3 2 31 31 H 0.97000 * 120.00161 * 359.72364 * 8 6 5 32 32 H 1.08998 * 109.47359 * 299.99756 * 9 8 6 33 33 H 1.09003 * 109.47265 * 60.00358 * 9 8 6 34 34 H 1.08001 * 119.96866 * 359.97438 * 11 10 9 35 35 H 1.07999 * 120.03549 * 180.27127 * 12 11 10 36 36 H 0.97001 * 119.99934 * 180.02562 * 18 17 15 37 37 H 1.08008 * 120.03490 * 179.97438 * 23 13 12 38 38 H 1.07999 * 119.96392 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5390 2.8138 -0.0009 6 6 4.7784 3.6142 -0.0020 7 8 5.8603 3.0595 -0.0022 8 7 4.7112 4.9603 0.0034 9 6 5.9419 5.7550 0.0085 10 6 5.5931 7.2212 0.0134 11 6 5.4410 7.8982 -1.1829 12 6 5.1158 9.2403 -1.1818 13 6 4.9531 9.9129 0.0223 14 8 4.6398 11.2338 0.0266 15 6 4.3842 11.7983 1.2241 16 1 4.5130 11.2246 2.1301 17 6 3.9559 13.1152 1.2926 18 7 3.7985 13.8138 0.1890 19 14 3.6024 13.8976 2.9516 20 1 4.8392 14.5332 3.4727 21 1 2.5437 14.9273 2.7977 22 1 3.1435 12.8540 3.9032 23 6 5.1121 9.2315 1.2219 24 6 5.4319 7.8881 1.2141 25 8 2.2757 3.2802 0.0054 26 7 1.4685 2.3805 -0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.2442 0.7262 -0.0002 31 1 3.8481 5.4029 0.0040 32 1 6.5246 5.5169 0.8983 33 1 6.5272 5.5242 -0.8816 34 1 5.5726 7.3758 -2.1190 35 1 4.9927 9.7675 -2.1163 36 1 3.4993 14.7353 0.2368 37 1 4.9867 9.7519 2.1600 38 1 5.5553 7.3576 2.1467 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184149857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:55 Heat of formation + Delta-G solvation = -3.076081 kcal Electronic energy + Delta-G solvation = -24579.742572 eV Core-core repulsion = 20585.597363 eV Total energy + Delta-G solvation = -3994.145209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.29189 -39.90249 -39.25039 -39.06767 -36.95406 -34.74184 -33.52633 -32.49026 -32.17259 -30.33239 -29.96415 -28.05935 -26.25220 -25.17482 -23.72975 -23.40589 -22.10093 -21.07909 -20.73519 -19.29704 -18.27172 -18.10935 -17.20974 -17.14033 -16.44980 -16.19526 -15.95426 -15.38272 -15.24529 -14.66813 -14.62048 -14.41352 -14.00550 -13.83919 -13.73938 -13.46164 -12.89379 -12.81907 -12.64712 -12.30164 -12.20518 -11.81693 -11.72876 -11.44447 -11.04071 -10.86338 -10.73820 -10.53732 -10.50344 -10.19522 -9.70850 -9.46782 -9.22771 -8.94348 -8.32670 -7.38026 -6.55810 -4.14648 0.46401 1.75679 1.93115 2.09578 2.27012 2.43886 2.76130 3.06314 3.08075 3.12963 3.27489 3.75137 3.88242 4.40336 4.44573 4.65852 4.66340 4.73184 4.85624 4.98609 5.05693 5.10073 5.17068 5.32610 5.32920 5.60173 5.72975 5.77734 6.08494 6.17785 6.30076 6.51351 6.55351 6.75942 6.90691 7.07980 7.20265 7.24035 7.31863 7.67212 7.70358 7.82966 7.88727 8.89435 9.56891 10.61499 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002251 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.797849 B =12435.737445 C =13259.565747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.202 3.798 4 C -0.157 4.157 5 C -0.054 4.054 6 C 0.600 3.400 7 O -0.515 6.515 8 N -0.701 5.701 9 C 0.178 3.822 10 C -0.220 4.220 11 C -0.052 4.052 12 C -0.195 4.195 13 C 0.162 3.838 14 O -0.172 6.172 15 C -0.394 4.394 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.858 5.858 19 Si 0.943 3.057 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.237 4.237 24 C -0.048 4.048 25 O 0.120 5.880 26 N -0.388 5.388 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.190 0.810 31 H 0.410 0.590 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.272 0.728 37 H 0.129 0.871 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 -21.685 0.318 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.005 3.995 4 C -0.180 4.180 5 C -0.120 4.120 6 C 0.382 3.618 7 O -0.392 6.392 8 N -0.352 5.352 9 C 0.057 3.943 10 C -0.222 4.222 11 C -0.071 4.071 12 C -0.215 4.215 13 C 0.107 3.893 14 O -0.074 6.074 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.492 5.492 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.257 4.257 24 C -0.067 4.067 25 O 0.054 5.946 26 N -0.112 5.112 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.207 0.793 31 H 0.246 0.754 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.146 0.854 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.612 -21.530 0.069 21.831 hybrid contribution -0.289 0.219 0.874 0.946 sum -3.901 -21.311 0.943 21.685 Atomic orbital electron populations 1.23118 0.76463 1.04326 1.02584 1.86216 1.22847 1.20348 1.89363 1.21911 0.90661 0.85862 1.01029 1.22173 0.94396 0.94964 1.06419 1.24181 0.87165 0.93878 1.06797 1.16527 0.84954 0.82254 0.78028 1.90882 1.26405 1.71372 1.50506 1.46344 1.11953 1.04715 1.72188 1.20141 0.84677 0.87009 1.02485 1.19129 1.15343 0.93896 0.93827 1.20536 0.96648 0.93314 0.96583 1.20219 1.10608 0.94332 0.96307 1.19455 0.91558 0.84967 0.93342 1.83980 1.73751 1.16492 1.33172 1.21364 1.46503 0.96075 0.83007 0.88856 1.25331 0.96163 0.95543 0.99448 1.70036 1.42158 1.09799 1.27211 0.85686 0.78586 0.79108 0.79928 1.19777 1.20169 1.19103 1.21161 1.10839 0.95117 0.98548 1.20646 0.95866 0.93784 0.96401 1.84983 1.11795 1.29595 1.68272 1.74025 1.15856 0.96691 1.24607 0.92047 0.92038 0.87438 0.79253 0.75383 0.90808 0.90770 0.86837 0.86316 0.91832 0.85365 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.73 101.05 1.08 1.28 16 2 O -0.28 -2.73 10.57 -18.88 -0.20 -2.93 16 3 C 0.20 2.21 8.00 -16.72 -0.13 2.08 16 4 C -0.16 -1.61 10.97 -38.77 -0.43 -2.03 16 5 C -0.05 -0.59 7.29 -36.36 -0.26 -0.86 16 6 C 0.60 7.21 7.82 -12.47 -0.10 7.11 16 7 O -0.52 -7.49 16.91 5.29 0.09 -7.40 16 8 N -0.70 -7.95 5.55 -62.53 -0.35 -8.30 16 9 C 0.18 2.19 5.80 -5.19 -0.03 2.16 16 10 C -0.22 -3.26 5.25 -104.58 -0.55 -3.81 16 11 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 12 C -0.20 -3.79 9.99 -39.40 -0.39 -4.18 16 13 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 14 O -0.17 -4.67 9.76 0.03 0.00 -4.67 16 15 C -0.39 -10.51 9.49 30.88 0.29 -10.22 16 16 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.34 13.67 55.48 0.76 -23.58 16 19 Si 0.94 19.76 29.55 -169.99 -5.02 14.74 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.24 -4.74 9.17 -39.40 -0.36 -5.10 16 24 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 25 O 0.12 1.36 11.03 15.50 0.17 1.53 16 26 N -0.39 -4.56 11.50 30.47 0.35 -4.21 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.19 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.41 4.30 8.29 -40.82 -0.34 3.96 16 32 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.13 2.59 5.64 -52.48 -0.30 2.29 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -30.81 346.14 -4.83 -35.63 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.84 Total: 5.56 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -2.00 Total: -11.59 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.76 Total: -36.09 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.06 Total: -13.47 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.81 -4.83 -35.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184149857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.556 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds