Wall clock time and date at job start Tue Mar 31 2020 11:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35725 * 116.99976 * 2 1 4 4 C 1.41856 * 126.78944 * 180.02562 * 3 2 1 5 5 C 1.36667 * 103.81420 * 179.97438 * 4 3 2 6 6 C 1.47534 * 126.87865 * 180.02562 * 5 4 3 7 7 O 1.21583 * 120.00172 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99946 * 180.27762 * 6 5 4 9 9 C 1.46500 * 120.00037 * 179.72193 * 8 6 5 10 10 C 1.50703 * 109.47209 * 179.97438 * 9 8 6 11 11 C 1.38300 * 119.92801 * 269.72897 * 10 9 8 12 12 C 1.38098 * 120.06481 * 179.72385 * 11 10 9 13 13 C 1.38878 * 119.93168 * 0.56722 * 12 11 10 14 14 O 1.35756 * 120.06842 * 179.67898 * 13 12 11 15 15 C 1.34829 * 116.99743 * 174.48726 * 14 13 12 16 16 H 1.08006 * 120.00014 * 5.06129 * 15 14 13 17 17 C 1.38650 * 120.00295 * 185.06073 * 15 14 13 18 18 N 1.31559 * 119.99575 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00664 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46983 * 89.99574 * 19 17 15 21 21 H 1.48494 * 109.47360 * 209.99769 * 19 17 15 22 22 H 1.48502 * 109.46902 * 329.99946 * 19 17 15 23 23 C 1.38876 * 119.86160 * 359.70567 * 13 12 11 24 24 C 1.38100 * 119.93052 * 0.02562 * 23 13 12 25 25 O 1.34662 * 106.24082 * 0.26307 * 5 4 3 26 26 N 1.20879 * 111.63023 * 359.52298 * 25 5 4 27 27 H 1.08999 * 109.46922 * 299.99744 * 1 2 3 28 28 H 1.09000 * 109.47335 * 60.00258 * 1 2 3 29 29 H 1.08998 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.08002 * 128.09168 * 359.94476 * 4 3 2 31 31 H 0.97000 * 120.00161 * 359.72364 * 8 6 5 32 32 H 1.08998 * 109.47359 * 299.99756 * 9 8 6 33 33 H 1.09003 * 109.47265 * 60.00358 * 9 8 6 34 34 H 1.08001 * 119.96866 * 359.97438 * 11 10 9 35 35 H 1.07999 * 120.03549 * 180.27127 * 12 11 10 36 36 H 0.97001 * 119.99934 * 180.02562 * 18 17 15 37 37 H 1.08008 * 120.03490 * 179.97438 * 23 13 12 38 38 H 1.07999 * 119.96392 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5390 2.8138 -0.0009 6 6 4.7784 3.6142 -0.0020 7 8 5.8603 3.0595 -0.0022 8 7 4.7112 4.9603 0.0034 9 6 5.9419 5.7550 0.0085 10 6 5.5931 7.2212 0.0134 11 6 5.4410 7.8982 -1.1829 12 6 5.1158 9.2403 -1.1818 13 6 4.9531 9.9129 0.0223 14 8 4.6398 11.2338 0.0266 15 6 4.3842 11.7983 1.2241 16 1 4.5130 11.2246 2.1301 17 6 3.9559 13.1152 1.2926 18 7 3.7985 13.8138 0.1890 19 14 3.6024 13.8976 2.9516 20 1 4.8392 14.5332 3.4727 21 1 2.5437 14.9273 2.7977 22 1 3.1435 12.8540 3.9032 23 6 5.1121 9.2315 1.2219 24 6 5.4319 7.8881 1.2141 25 8 2.2757 3.2802 0.0054 26 7 1.4685 2.3805 -0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.2442 0.7262 -0.0002 31 1 3.8481 5.4029 0.0040 32 1 6.5246 5.5169 0.8983 33 1 6.5272 5.5242 -0.8816 34 1 5.5726 7.3758 -2.1190 35 1 4.9927 9.7675 -2.1163 36 1 3.4993 14.7353 0.2368 37 1 4.9867 9.7519 2.1600 38 1 5.5553 7.3576 2.1467 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184149857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:55 Heat of formation + Delta-G solvation = -26.032360 kcal Electronic energy + Delta-G solvation = -24580.738031 eV Core-core repulsion = 20585.597363 eV Total energy + Delta-G solvation = -3995.140668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.13193 -41.05220 -40.53641 -39.95101 -38.49813 -35.87685 -34.35294 -34.27722 -33.15340 -31.80855 -31.29994 -28.64463 -27.77665 -26.69065 -24.61793 -24.35625 -23.62264 -22.17733 -21.89238 -20.26403 -19.83022 -19.11378 -18.84023 -17.97143 -17.43080 -17.16339 -16.72087 -16.51197 -16.35516 -16.05246 -15.94457 -15.66367 -15.51811 -15.16159 -14.83851 -14.65007 -14.38132 -14.21518 -13.67264 -13.31552 -13.18828 -13.02583 -12.92585 -12.65392 -12.50000 -12.35015 -12.21992 -12.11268 -11.58745 -11.17960 -11.04449 -10.79843 -10.48820 -10.20699 -9.77783 -9.00112 -8.47303 -6.15313 -0.39452 0.53680 0.61382 0.93764 1.36742 1.43339 1.48839 1.53683 1.58944 1.84017 2.17932 2.31979 2.85267 2.97138 3.19557 3.50936 3.62611 3.75833 3.91953 3.99709 4.06453 4.20546 4.23432 4.27319 4.48946 4.57694 4.59634 4.63783 4.76136 4.83458 5.07093 5.16177 5.19125 5.29749 5.54884 5.71950 5.76649 5.80979 6.03087 6.18288 6.26261 6.82487 6.93445 6.97728 7.77445 8.75476 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002251 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.797849 B =12435.737445 C =13259.565747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.289 6.289 3 C 0.199 3.801 4 C -0.150 4.150 5 C -0.058 4.058 6 C 0.610 3.390 7 O -0.539 6.539 8 N -0.696 5.696 9 C 0.182 3.818 10 C -0.185 4.185 11 C -0.041 4.041 12 C -0.207 4.207 13 C 0.122 3.878 14 O -0.230 6.230 15 C -0.412 4.412 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.919 5.919 19 Si 1.017 2.983 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.252 1.252 23 C -0.246 4.246 24 C -0.043 4.043 25 O 0.117 5.883 26 N -0.402 5.402 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.138 0.862 30 H 0.207 0.793 31 H 0.416 0.584 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.273 0.727 37 H 0.119 0.881 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 -25.086 1.273 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.002 3.998 4 C -0.173 4.173 5 C -0.124 4.124 6 C 0.394 3.606 7 O -0.417 6.417 8 N -0.346 5.346 9 C 0.061 3.939 10 C -0.186 4.186 11 C -0.060 4.060 12 C -0.226 4.226 13 C 0.071 3.929 14 O -0.136 6.136 15 C -0.488 4.488 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.176 1.176 23 C -0.265 4.265 24 C -0.062 4.062 25 O 0.051 5.949 26 N -0.127 5.127 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.224 0.776 31 H 0.253 0.747 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.287 -24.999 1.023 25.235 hybrid contribution -0.327 0.806 0.469 0.988 sum -3.615 -24.193 1.492 24.507 Atomic orbital electron populations 1.23384 0.74872 1.06343 1.02462 1.86225 1.24454 1.19734 1.89134 1.22107 0.91053 0.86071 1.00596 1.22441 0.94631 0.95032 1.05193 1.23988 0.86838 0.94002 1.07616 1.16424 0.84798 0.82103 0.77314 1.90881 1.27319 1.71778 1.51675 1.46136 1.11905 1.04601 1.72003 1.20122 0.85135 0.84711 1.03961 1.19470 1.10996 0.95331 0.92839 1.20930 0.94610 0.91700 0.98733 1.20468 1.10959 0.95893 0.95288 1.20036 0.93014 0.84334 0.95498 1.83949 1.77148 1.18920 1.33574 1.21827 1.46637 0.96733 0.83608 0.87850 1.26580 0.95919 0.95923 1.03647 1.70181 1.45301 1.10304 1.29905 0.84597 0.78606 0.78186 0.74925 1.18882 1.19781 1.17564 1.21258 1.11251 0.96685 0.97322 1.20988 0.94385 0.92254 0.98566 1.84968 1.11846 1.29593 1.68540 1.74011 1.16207 0.97164 1.25283 0.92161 0.92138 0.84442 0.77591 0.74695 0.89595 0.89353 0.83132 0.86806 0.91845 0.86284 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.73 113.37 1.22 1.48 16 2 O -0.29 -5.03 10.57 -90.47 -0.96 -5.98 16 3 C 0.20 3.95 8.00 85.78 0.69 4.63 16 4 C -0.15 -2.72 10.97 22.80 0.25 -2.47 16 5 C -0.06 -1.13 7.29 24.36 0.18 -0.95 16 6 C 0.61 12.67 7.82 86.69 0.68 13.35 16 7 O -0.54 -13.89 16.91 -3.98 -0.07 -13.96 16 8 N -0.70 -13.09 5.55 -470.01 -2.61 -15.70 16 9 C 0.18 3.63 5.80 85.63 0.50 4.13 16 10 C -0.19 -4.79 5.25 -19.83 -0.10 -4.89 16 11 C -0.04 -1.19 9.69 22.25 0.22 -0.97 16 12 C -0.21 -8.03 9.99 22.39 0.22 -7.80 16 13 C 0.12 5.69 6.65 22.58 0.15 5.84 16 14 O -0.23 -13.31 9.76 -22.80 -0.22 -13.53 16 15 C -0.41 -23.17 9.49 67.92 0.64 -22.53 16 16 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 17 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 18 N -0.92 -55.30 13.67 21.61 0.30 -55.01 16 19 Si 1.02 41.75 29.55 68.60 2.03 43.78 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 23 C -0.25 -9.78 9.17 22.39 0.21 -9.58 16 24 C -0.04 -1.29 9.69 22.25 0.22 -1.08 16 25 O 0.12 2.41 11.03 65.63 0.72 3.14 16 26 N -0.40 -8.76 11.50 -172.00 -1.98 -10.74 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.21 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.42 7.21 8.29 -92.71 -0.77 6.44 16 32 H 0.09 1.63 8.08 -2.39 -0.02 1.62 16 33 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 34 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.12 4.89 5.64 -2.91 -0.02 4.87 16 38 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -71.46 346.14 3.10 -68.36 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.36 Total: 21.30 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.52 Total: -21.66 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -4.29 Total: -81.44 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.52 Total: -30.33 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -71.46 3.10 -68.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184149857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.327 kcal (2) G-P(sol) polarization free energy of solvation -71.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds