Wall clock time and date at job start Tue Mar 31 2020 12:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99727 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47396 * 89.99859 * 9 7 5 11 11 H 1.48501 * 109.46640 * 210.00103 * 9 7 5 12 12 H 1.48499 * 109.46808 * 329.99492 * 9 7 5 13 13 O 1.42897 * 109.46881 * 294.99866 * 3 2 1 14 14 C 1.34937 * 117.00364 * 89.99939 * 13 3 2 15 15 O 1.21663 * 119.99534 * 359.97438 * 14 13 3 16 16 C 1.46270 * 120.00216 * 179.97438 * 14 13 3 17 17 C 1.37908 * 125.96304 * 179.97438 * 16 14 13 18 18 C 1.39772 * 106.76678 * 180.02562 * 17 16 14 19 19 C 1.36618 * 107.11344 * 0.02562 * 18 17 16 20 20 C 1.47638 * 125.64758 * 180.02562 * 19 18 17 21 21 C 1.39667 * 120.16236 * 309.71929 * 20 19 18 22 22 C 1.37897 * 119.86310 * 179.74918 * 21 20 19 23 23 C 1.38427 * 120.21491 * 0.55501 * 22 21 20 24 24 C 1.38279 * 120.33698 * 359.70003 * 23 22 21 25 25 C 1.38231 * 120.12378 * 0.02562 * 24 23 22 26 26 F 1.35105 * 120.10527 * 179.97438 * 25 24 23 27 27 O 1.34335 * 108.70144 * 359.73433 * 19 18 17 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 34 34 H 1.07994 * 126.61518 * 0.02563 * 17 16 14 35 35 H 1.07999 * 126.44245 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.07101 * 0.02562 * 21 20 19 37 37 H 1.07998 * 119.89427 * 180.25698 * 22 21 20 38 38 H 1.08000 * 119.83211 * 179.72789 * 23 22 21 39 39 H 1.08001 * 119.93810 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0050 0.8813 1.3819 10 1 6.4417 2.1143 2.0849 11 1 6.4395 -0.3098 2.1550 12 1 6.6135 0.8415 0.0279 13 8 1.6620 2.0814 -1.2210 14 6 0.4726 2.7185 -1.2365 15 8 -0.2242 2.7301 -0.2392 16 6 0.0210 3.3950 -2.4522 17 6 -1.1664 4.0797 -2.6045 18 6 -1.1882 4.5621 -3.9162 19 6 -0.0268 4.1592 -4.5121 20 6 0.3713 4.4481 -5.9041 21 6 -0.5129 4.1920 -6.9544 22 6 -0.1367 4.4691 -8.2518 23 6 1.1184 4.9892 -8.5172 24 6 2.0027 5.2411 -7.4844 25 6 1.6379 4.9739 -6.1781 26 9 2.5024 5.2197 -5.1693 27 8 0.6959 3.4620 -3.6197 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0610 2.9499 34 1 -1.9317 4.2166 -1.8550 35 1 -1.9756 5.1433 -4.3729 36 1 -1.4911 3.7821 -6.7506 37 1 -0.8216 4.2751 -9.0640 38 1 1.4083 5.1997 -9.5360 39 1 2.9802 5.6473 -7.6987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188027429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:03 Heat of formation + Delta-G solvation = -94.255894 kcal Electronic energy + Delta-G solvation = -25799.002060 eV Core-core repulsion = 21780.983036 eV Total energy + Delta-G solvation = -4018.019024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.06657 -42.56735 -39.60448 -39.13339 -36.03160 -33.59677 -33.28171 -32.41060 -31.35733 -30.95311 -28.97416 -27.26039 -24.63222 -23.41816 -23.04332 -22.15341 -21.38035 -20.50763 -19.64574 -18.36432 -17.77045 -16.89937 -16.79813 -16.61015 -16.12765 -15.76153 -15.73094 -15.01556 -14.96844 -14.53583 -14.33161 -13.46699 -13.40782 -13.23716 -13.09119 -13.00278 -12.78436 -12.59666 -12.29165 -12.16865 -11.55836 -11.48889 -11.37575 -11.22872 -10.94499 -10.68035 -10.31041 -10.13189 -10.03901 -9.74972 -9.66411 -9.39983 -9.17832 -8.79909 -8.45358 -8.31299 -6.17235 -4.24161 0.37735 0.80836 1.19316 2.25739 2.55278 3.22261 3.26683 3.31760 3.35697 3.39149 3.58699 3.87006 4.28029 4.36788 4.38962 4.56273 4.78468 4.82480 4.90707 5.14587 5.28839 5.36539 5.54647 5.62745 5.64583 5.74507 5.78686 5.93069 6.00019 6.22456 6.27231 6.29486 6.43213 6.43884 6.83525 6.87767 6.94207 7.15231 7.16850 7.60286 7.72215 7.88268 8.14520 8.54917 8.87546 9.40901 10.89671 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.003386 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.498348 B = 8268.509213 C = 9486.688549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.216 3.784 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.333 6.333 14 C 0.536 3.464 15 O -0.489 6.489 16 C -0.032 4.032 17 C -0.125 4.125 18 C -0.191 4.191 19 C 0.042 3.958 20 C -0.058 4.058 21 C -0.061 4.061 22 C -0.132 4.132 23 C -0.079 4.079 24 C -0.155 4.155 25 C 0.127 3.873 26 F -0.124 7.124 27 O -0.131 6.131 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.266 0.734 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 8.938 -20.675 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.163 3.837 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.249 6.249 14 C 0.380 3.620 15 O -0.380 6.380 16 C -0.084 4.084 17 C -0.144 4.144 18 C -0.210 4.210 19 C -0.011 4.011 20 C -0.060 4.060 21 C -0.079 4.079 22 C -0.151 4.151 23 C -0.098 4.098 24 C -0.174 4.174 25 C 0.108 3.892 26 F -0.102 7.102 27 O -0.025 6.025 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.708 8.671 -20.163 23.613 hybrid contribution 0.945 0.019 0.519 1.078 sum -7.764 8.690 -19.643 22.840 Atomic orbital electron populations 1.21880 0.98386 0.99213 1.00679 1.22063 0.92627 0.99318 1.03549 1.20424 0.95407 0.88997 0.78884 0.93357 1.21047 0.89440 1.39051 1.06353 0.91237 1.24882 0.99297 0.94673 0.95013 1.69887 1.35402 1.37812 1.09441 0.86272 0.83817 0.77690 0.78384 1.20365 1.20914 1.19558 1.86264 1.32764 1.61775 1.44058 1.19120 0.81699 0.76762 0.84438 1.90906 1.55775 1.58854 1.32451 1.21740 0.94099 1.07170 0.85349 1.22073 0.96893 0.98033 0.97442 1.21661 0.98763 1.06076 0.94530 1.20462 0.92124 0.98851 0.89663 1.17835 0.94298 1.04634 0.89183 1.21125 0.99090 0.96816 0.90898 1.21138 0.97016 1.00471 0.96426 1.21183 0.93076 0.96372 0.99121 1.21158 1.01952 1.03769 0.90540 1.17903 0.87129 0.98875 0.85342 1.91597 1.68150 1.91406 1.59021 1.84298 1.42565 1.56467 1.19149 0.94602 0.95110 0.92659 0.87160 0.93858 0.92371 0.81553 0.82186 0.84181 0.84578 0.84574 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.55 37.16 0.32 -2.91 16 2 C -0.14 -3.50 5.48 -26.73 -0.15 -3.64 16 3 C 0.22 5.91 2.22 -27.88 -0.06 5.85 16 4 H 0.05 1.44 7.11 -51.93 -0.37 1.07 16 5 C -0.52 -15.00 8.89 -34.44 -0.31 -15.30 16 6 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 7 C 0.06 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.89 -25.30 11.29 55.43 0.63 -24.68 16 9 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 O -0.33 -8.51 9.70 -42.64 -0.41 -8.93 16 14 C 0.54 12.13 6.33 33.96 0.21 12.35 16 15 O -0.49 -11.54 13.99 -19.39 -0.27 -11.81 16 16 C -0.03 -0.61 7.21 -36.48 -0.26 -0.87 16 17 C -0.12 -1.87 10.65 -39.13 -0.42 -2.28 16 18 C -0.19 -2.39 10.69 -39.59 -0.42 -2.81 16 19 C 0.04 0.60 6.36 -36.33 -0.23 0.37 16 20 C -0.06 -0.69 5.79 -104.92 -0.61 -1.30 16 21 C -0.06 -0.51 9.70 -39.17 -0.38 -0.89 16 22 C -0.13 -0.84 10.03 -39.64 -0.40 -1.24 16 23 C -0.08 -0.51 10.04 -39.50 -0.40 -0.91 16 24 C -0.16 -1.36 10.01 -39.57 -0.40 -1.75 16 25 C 0.13 1.55 7.29 -38.98 -0.28 1.27 16 26 F -0.12 -1.87 16.78 2.25 0.04 -1.84 16 27 O -0.13 -2.42 10.64 3.31 0.04 -2.39 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.66 6.05 -51.93 -0.31 0.35 16 30 H 0.05 1.27 7.75 -51.93 -0.40 0.87 16 31 H 0.11 3.00 5.95 -51.93 -0.31 2.70 16 32 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -32.36 345.40 -8.00 -40.36 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.32 Total: 0.05 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.87 Total: -12.40 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.63 Total: -24.68 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.65 Total: -23.13 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.36 -8.00 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188027429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.900 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds