Wall clock time and date at job start Tue Mar 31 2020 12:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99727 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47396 * 89.99859 * 9 7 5 11 11 H 1.48501 * 109.46640 * 210.00103 * 9 7 5 12 12 H 1.48499 * 109.46808 * 329.99492 * 9 7 5 13 13 O 1.42897 * 109.46881 * 294.99866 * 3 2 1 14 14 C 1.34937 * 117.00364 * 89.99939 * 13 3 2 15 15 O 1.21663 * 119.99534 * 359.97438 * 14 13 3 16 16 C 1.46270 * 120.00216 * 179.97438 * 14 13 3 17 17 C 1.37908 * 125.96304 * 179.97438 * 16 14 13 18 18 C 1.39772 * 106.76678 * 180.02562 * 17 16 14 19 19 C 1.36618 * 107.11344 * 0.02562 * 18 17 16 20 20 C 1.47638 * 125.64758 * 180.02562 * 19 18 17 21 21 C 1.39667 * 120.16236 * 309.71929 * 20 19 18 22 22 C 1.37897 * 119.86310 * 179.74918 * 21 20 19 23 23 C 1.38427 * 120.21491 * 0.55501 * 22 21 20 24 24 C 1.38279 * 120.33698 * 359.70003 * 23 22 21 25 25 C 1.38231 * 120.12378 * 0.02562 * 24 23 22 26 26 F 1.35105 * 120.10527 * 179.97438 * 25 24 23 27 27 O 1.34335 * 108.70144 * 359.73433 * 19 18 17 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 34 34 H 1.07994 * 126.61518 * 0.02563 * 17 16 14 35 35 H 1.07999 * 126.44245 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.07101 * 0.02562 * 21 20 19 37 37 H 1.07998 * 119.89427 * 180.25698 * 22 21 20 38 38 H 1.08000 * 119.83211 * 179.72789 * 23 22 21 39 39 H 1.08001 * 119.93810 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0050 0.8813 1.3819 10 1 6.4417 2.1143 2.0849 11 1 6.4395 -0.3098 2.1550 12 1 6.6135 0.8415 0.0279 13 8 1.6620 2.0814 -1.2210 14 6 0.4726 2.7185 -1.2365 15 8 -0.2242 2.7301 -0.2392 16 6 0.0210 3.3950 -2.4522 17 6 -1.1664 4.0797 -2.6045 18 6 -1.1882 4.5621 -3.9162 19 6 -0.0268 4.1592 -4.5121 20 6 0.3713 4.4481 -5.9041 21 6 -0.5129 4.1920 -6.9544 22 6 -0.1367 4.4691 -8.2518 23 6 1.1184 4.9892 -8.5172 24 6 2.0027 5.2411 -7.4844 25 6 1.6379 4.9739 -6.1781 26 9 2.5024 5.2197 -5.1693 27 8 0.6959 3.4620 -3.6197 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0610 2.9499 34 1 -1.9317 4.2166 -1.8550 35 1 -1.9756 5.1433 -4.3729 36 1 -1.4911 3.7821 -6.7506 37 1 -0.8216 4.2751 -9.0640 38 1 1.4083 5.1997 -9.5360 39 1 2.9802 5.6473 -7.6987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188027429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:02 Heat of formation + Delta-G solvation = -111.765638 kcal Electronic energy + Delta-G solvation = -25799.761339 eV Core-core repulsion = 21780.983036 eV Total energy + Delta-G solvation = -4018.778303 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.04977 -43.80613 -41.43067 -39.82061 -37.92946 -35.59988 -34.46381 -33.52738 -33.25659 -31.60599 -30.22538 -29.20773 -26.02983 -24.98514 -24.07402 -23.28600 -22.52260 -22.07927 -21.38274 -19.76944 -18.89540 -18.68364 -18.03283 -17.90483 -17.44447 -17.27314 -16.78532 -16.58826 -16.49524 -15.70471 -15.13304 -14.99461 -14.89152 -14.43146 -14.32357 -14.17114 -14.12359 -14.01565 -13.51137 -13.38708 -13.32449 -13.23421 -12.88217 -12.83756 -12.63752 -12.19772 -12.15903 -11.92112 -11.74485 -11.47999 -11.24787 -10.88875 -10.59848 -10.51886 -9.88808 -9.38720 -8.32182 -6.49610 -0.60826 0.06052 0.17276 1.14047 1.31799 1.38976 1.40152 1.52258 1.78262 2.02962 2.38131 2.58434 2.96719 3.13117 3.26675 3.69717 3.74114 3.90995 4.03840 4.27802 4.28700 4.31733 4.33824 4.35898 4.40667 4.48883 4.72183 4.76054 4.82685 5.00628 5.01315 5.04863 5.14594 5.22287 5.24999 5.27408 5.38162 5.43918 5.59542 5.66754 5.82376 5.84836 6.01355 6.51283 6.80455 7.21050 8.74898 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.003386 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.498348 B = 8268.509213 C = 9486.688549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C 0.220 3.780 4 H 0.013 0.987 5 C -0.556 4.556 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.981 3.019 10 H -0.271 1.271 11 H -0.269 1.269 12 H -0.268 1.268 13 O -0.353 6.353 14 C 0.533 3.467 15 O -0.511 6.511 16 C -0.091 4.091 17 C -0.092 4.092 18 C -0.180 4.180 19 C 0.050 3.950 20 C -0.091 4.091 21 C -0.056 4.056 22 C -0.119 4.119 23 C -0.065 4.065 24 C -0.159 4.159 25 C 0.086 3.914 26 F -0.155 7.155 27 O -0.165 6.165 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.273 0.727 34 H 0.187 0.813 35 H 0.208 0.792 36 H 0.164 0.836 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 9.593 -24.153 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.166 3.834 4 H 0.031 0.969 5 C -0.594 4.594 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.804 3.196 10 H -0.196 1.196 11 H -0.193 1.193 12 H -0.192 1.192 13 O -0.269 6.269 14 C 0.380 3.620 15 O -0.404 6.404 16 C -0.141 4.141 17 C -0.111 4.111 18 C -0.198 4.198 19 C -0.002 4.002 20 C -0.092 4.092 21 C -0.074 4.074 22 C -0.136 4.136 23 C -0.083 4.083 24 C -0.178 4.178 25 C 0.066 3.934 26 F -0.134 7.134 27 O -0.061 6.061 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.204 0.796 35 H 0.225 0.775 36 H 0.181 0.819 37 H 0.194 0.806 38 H 0.192 0.808 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.042 9.331 -23.647 27.333 hybrid contribution 1.261 -0.075 1.337 1.839 sum -8.781 9.256 -22.310 25.700 Atomic orbital electron populations 1.21731 0.96012 1.00969 1.00102 1.21907 0.94734 0.97810 1.02430 1.20156 0.94883 0.89700 0.78618 0.96944 1.21297 0.90375 1.40589 1.07129 0.92347 1.25785 1.04385 0.93594 0.94138 1.69991 1.37472 1.37535 1.09729 0.85211 0.77469 0.78326 0.78579 1.19601 1.19335 1.19206 1.86238 1.34888 1.62764 1.43050 1.19621 0.80396 0.76153 0.85860 1.90859 1.55915 1.59897 1.33707 1.21298 0.96326 1.11406 0.85110 1.22490 0.95013 0.94805 0.98779 1.22139 0.99166 1.05518 0.92954 1.21350 0.92075 0.96552 0.90265 1.18100 0.95374 1.07022 0.88702 1.21475 0.99250 0.95898 0.90734 1.21657 0.97361 0.98135 0.96478 1.21704 0.92440 0.94045 1.00090 1.21441 1.03191 1.03525 0.89604 1.18439 0.87395 1.01458 0.86074 1.91512 1.69242 1.92055 1.60589 1.84249 1.44114 1.58034 1.19718 0.91506 0.94983 0.93895 0.89009 0.93925 0.91768 0.79588 0.77469 0.81891 0.80556 0.80757 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.55 71.98 0.62 -5.40 16 2 C -0.13 -6.97 5.48 30.60 0.17 -6.80 16 3 C 0.22 12.85 2.22 29.85 0.07 12.92 16 4 H 0.01 0.82 7.11 -2.39 -0.02 0.80 16 5 C -0.56 -33.78 8.89 25.60 0.23 -33.55 16 6 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -53.36 11.29 21.45 0.24 -53.12 16 9 Si 0.98 44.78 29.54 68.60 2.03 46.81 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 O -0.35 -19.44 9.70 -57.10 -0.55 -20.00 16 14 C 0.53 25.81 6.33 69.91 0.44 26.25 16 15 O -0.51 -25.64 13.99 19.30 0.27 -25.37 16 16 C -0.09 -3.62 7.21 24.28 0.18 -3.45 16 17 C -0.09 -2.67 10.65 22.56 0.24 -2.43 16 18 C -0.18 -4.10 10.69 22.26 0.24 -3.86 16 19 C 0.05 1.43 6.36 24.38 0.15 1.58 16 20 C -0.09 -2.06 5.79 -20.06 -0.12 -2.18 16 21 C -0.06 -0.73 9.70 22.53 0.22 -0.51 16 22 C -0.12 -0.90 10.03 22.23 0.22 -0.68 16 23 C -0.07 -0.56 10.04 22.32 0.22 -0.33 16 24 C -0.16 -2.51 10.01 22.28 0.22 -2.28 16 25 C 0.09 2.10 7.29 22.66 0.17 2.27 16 26 F -0.16 -5.08 16.78 44.97 0.75 -4.32 16 27 O -0.17 -6.46 10.64 -9.76 -0.10 -6.56 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.03 1.43 6.05 -2.39 -0.01 1.42 16 30 H 0.04 2.04 7.75 -2.38 -0.02 2.03 16 31 H 0.09 5.22 5.95 -2.39 -0.01 5.21 16 32 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.27 14.85 8.31 -92.71 -0.77 14.07 16 34 H 0.19 4.57 8.06 -2.91 -0.02 4.55 16 35 H 0.21 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 37 H 0.18 0.02 8.06 -2.91 -0.02 -0.01 16 38 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -77.86 345.40 7.43 -70.43 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.08 Total: 8.93 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 3.71 Total: -16.79 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.24 Total: -53.12 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.39 Total: -51.93 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.75 Total: -4.32 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -77.86 7.43 -70.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188027429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.337 kcal (2) G-P(sol) polarization free energy of solvation -77.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds