Wall clock time and date at job start Tue Mar 31 2020 12:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47077 * 256.83800 * 3 2 1 5 5 N 1.46507 * 109.47081 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99812 * 274.96126 * 5 4 3 7 7 C 1.50701 * 109.47016 * 269.99675 * 6 5 4 8 8 H 1.07997 * 119.99866 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99651 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00239 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99653 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47312 * 359.97438 * 11 9 7 13 13 H 1.48489 * 109.47154 * 119.99883 * 11 9 7 14 14 H 1.48504 * 109.46935 * 240.00204 * 11 9 7 15 15 C 1.34779 * 119.99979 * 94.96041 * 5 4 3 16 16 O 1.21600 * 120.00063 * 185.66456 * 15 5 4 17 17 C 1.47436 * 119.99658 * 5.66076 * 15 5 4 18 18 C 1.39730 * 120.20612 * 55.06276 * 17 15 5 19 19 C 1.37748 * 119.92659 * 180.02562 * 18 17 15 20 20 C 1.38615 * 120.35289 * 0.02562 * 19 18 17 21 21 C 1.37956 * 120.41900 * 0.25904 * 20 19 18 22 22 N 1.48019 * 119.96532 * 179.72113 * 21 20 19 23 23 O 1.21805 * 120.00274 * 5.35026 * 22 21 20 24 24 O 1.21802 * 119.99898 * 185.35158 * 22 21 20 25 25 C 1.38951 * 120.06346 * 359.44833 * 21 20 19 26 26 N 1.38883 * 120.17541 * 180.25314 * 25 21 20 27 27 H 1.08996 * 109.47059 * 136.83750 * 3 2 1 28 28 H 1.09000 * 109.47278 * 16.83827 * 3 2 1 29 29 H 1.08996 * 109.47217 * 60.00046 * 4 3 2 30 30 H 1.09000 * 109.47089 * 300.00143 * 4 3 2 31 31 H 1.09001 * 109.47322 * 30.00131 * 6 5 4 32 32 H 1.09005 * 109.46827 * 150.00235 * 6 5 4 33 33 H 0.96995 * 119.99614 * 180.02562 * 10 9 7 34 34 H 1.07999 * 120.04200 * 0.03693 * 18 17 15 35 35 H 1.08004 * 119.82670 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.78600 * 179.97438 * 20 19 18 37 37 H 0.97001 * 119.99833 * 205.32915 * 26 25 21 38 38 H 0.96998 * 119.99745 * 25.32212 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3293 1.4046 5 7 4.5829 0.3306 1.4045 6 6 5.3164 -0.9245 1.5852 7 6 5.5679 -1.1524 3.0535 8 1 5.2162 -0.4343 3.7794 9 6 6.2472 -2.2777 3.4700 10 7 6.6760 -3.1519 2.5859 11 14 6.5584 -2.5605 5.2901 12 1 5.9796 -1.4381 6.0715 13 1 5.9225 -3.8354 5.7087 14 1 8.0210 -2.6323 5.5368 15 6 5.2558 1.4865 1.2381 16 8 6.4673 1.4753 1.1347 17 6 4.5228 2.7645 1.1813 18 6 3.6608 3.1272 2.2194 19 6 2.9784 4.3224 2.1602 20 6 3.1414 5.1690 1.0748 21 6 3.9843 4.8225 0.0391 22 7 4.1461 5.7313 -1.1180 23 8 3.6128 6.8264 -1.1116 24 8 4.8126 5.3840 -2.0765 25 6 4.6858 3.6239 0.0838 26 7 5.5390 3.2752 -0.9551 27 1 2.9709 0.7504 -0.7030 28 1 2.9718 -0.9828 -0.2977 29 1 2.7548 -0.4204 2.1076 30 1 2.7540 1.3128 1.7023 31 1 4.7280 -1.7501 1.1849 32 1 6.2688 -0.8679 1.0579 33 1 7.1535 -3.9436 2.8791 34 1 3.5297 2.4714 3.0675 35 1 2.3128 4.6013 2.9637 36 1 2.6016 6.1036 1.0376 37 1 5.7376 2.3415 -1.1270 38 1 5.9363 3.9655 -1.5088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267197407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:54 Heat of formation + Delta-G solvation = 23.971867 kcal Electronic energy + Delta-G solvation = -26468.088752 eV Core-core repulsion = 22507.409182 eV Total energy + Delta-G solvation = -3960.679571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30648 -40.48704 -38.46328 -37.00041 -36.79537 -35.58262 -34.77373 -33.10800 -32.09100 -31.01717 -29.68597 -27.47802 -26.44063 -24.58943 -24.04764 -22.66204 -22.34590 -19.90744 -18.81130 -18.44707 -17.78004 -17.69132 -17.41523 -17.12323 -16.58435 -16.51509 -15.96178 -15.02445 -14.95203 -14.78254 -14.46941 -14.09226 -13.92025 -13.50664 -13.08977 -12.81970 -12.67846 -12.48020 -12.30447 -12.19836 -11.88340 -11.63535 -11.43763 -11.34831 -11.23653 -11.10665 -11.02523 -10.84967 -10.78601 -10.33786 -9.86883 -9.73910 -9.35699 -8.60959 -8.24076 -8.06485 -6.22714 -4.28476 -0.19538 0.79699 1.24180 1.34927 2.61119 2.73604 2.81665 3.19126 3.25131 3.27802 3.29004 3.36944 3.46022 3.94406 4.25807 4.31870 4.46145 4.67254 4.71745 4.84948 4.90051 5.01782 5.12337 5.17230 5.31530 5.38906 5.66815 5.69760 5.87708 5.90932 6.01805 6.37369 6.71098 6.93546 7.12469 7.22789 7.39750 7.49231 7.62026 7.72161 7.96412 8.00172 8.53358 8.76859 9.37976 10.85387 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.004039 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.001421 B = 6929.974764 C = 7675.178479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.216 3.784 3 C -0.048 4.048 4 C 0.108 3.892 5 N -0.585 5.585 6 C 0.243 3.757 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.557 3.443 16 O -0.518 6.518 17 C -0.195 4.195 18 C 0.004 3.996 19 C -0.176 4.176 20 C -0.003 4.003 21 C -0.128 4.128 22 N 0.052 4.948 23 O -0.171 6.171 24 O -0.192 6.192 25 C 0.320 3.680 26 N -0.833 5.833 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.265 0.735 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.412 0.588 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 11.915 -3.548 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.102 4.102 3 C -0.090 4.090 4 C -0.018 4.018 5 N -0.316 5.316 6 C 0.125 3.875 7 C -0.573 4.573 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.342 3.658 16 O -0.394 6.394 17 C -0.204 4.204 18 C -0.015 4.015 19 C -0.197 4.197 20 C -0.022 4.022 21 C -0.219 4.219 22 N 0.563 4.437 23 O -0.385 6.385 24 O -0.396 6.396 25 C 0.203 3.797 26 N -0.377 5.377 27 H 0.121 0.879 28 H 0.137 0.863 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.243 0.757 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.139 11.286 -3.192 14.277 hybrid contribution 0.902 -0.140 0.515 1.048 sum -7.237 11.146 -2.678 13.557 Atomic orbital electron populations 1.81214 1.12933 1.09215 1.08441 1.29024 0.95036 0.92921 0.93264 1.19809 0.81596 1.06378 1.01172 1.21543 0.82028 1.03686 0.94555 1.48191 1.05080 1.09141 1.69183 1.19456 0.92711 0.77818 0.97531 1.21405 1.37168 1.06772 0.91937 0.92220 1.24910 0.95116 0.95754 0.98031 1.69915 1.37851 1.11540 1.33578 0.86453 0.78202 0.78073 0.84764 1.19750 1.20883 1.20826 1.17717 0.87050 0.82751 0.78251 1.90837 1.13103 1.86405 1.49046 1.19900 1.05745 0.99267 0.95479 1.21619 0.88588 0.95129 0.96210 1.20894 1.04507 0.94863 0.99405 1.20937 0.91951 0.99547 0.89799 1.20563 1.12448 0.95827 0.93071 1.43371 0.98148 1.00858 1.01368 1.94518 1.49038 1.07881 1.87072 1.94326 1.39223 1.79838 1.26219 1.17179 0.85929 0.89168 0.87406 1.43096 1.48550 1.13109 1.32912 0.87941 0.86278 0.88443 0.90164 0.94327 0.93210 0.92555 0.83217 0.83450 0.83019 0.75701 0.74502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.29 18.54 42.15 0.78 -5.51 16 2 C 0.22 2.52 15.43 -20.76 -0.32 2.20 16 3 C -0.05 -0.48 6.02 -29.52 -0.18 -0.66 16 4 C 0.11 1.29 5.19 -4.04 -0.02 1.26 16 5 N -0.59 -9.48 2.46 -176.32 -0.43 -9.92 16 6 C 0.24 5.23 5.23 -5.20 -0.03 5.20 16 7 C -0.53 -13.16 9.39 -34.44 -0.32 -13.49 16 8 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 11 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.56 9.24 6.30 -12.51 -0.08 9.16 16 16 O -0.52 -10.82 15.99 5.28 0.08 -10.74 16 17 C -0.20 -2.51 4.91 -104.80 -0.51 -3.03 16 18 C 0.00 0.04 7.47 -39.20 -0.29 -0.25 16 19 C -0.18 -1.45 10.02 -39.62 -0.40 -1.84 16 20 C 0.00 -0.03 9.54 -39.55 -0.38 -0.40 16 21 C -0.13 -1.53 6.86 -79.79 -0.55 -2.08 16 22 N 0.05 0.70 4.45 34.04 0.15 0.85 16 23 O -0.17 -2.36 18.45 -29.46 -0.54 -2.90 16 24 O -0.19 -2.64 15.88 -29.46 -0.47 -3.10 16 25 C 0.32 3.99 6.74 -83.61 -0.56 3.43 16 26 N -0.83 -9.97 8.07 32.55 0.26 -9.71 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 30 H 0.08 0.80 4.43 -51.93 -0.23 0.57 16 31 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.05 1.23 7.35 -51.93 -0.38 0.85 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 34 H 0.15 1.38 7.59 -52.49 -0.40 0.98 16 35 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.15 1.15 7.60 -52.49 -0.40 0.75 16 37 H 0.41 4.85 7.74 -40.82 -0.32 4.54 16 38 H 0.42 4.78 6.09 -40.82 -0.25 4.53 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -31.36 343.99 -6.63 -37.99 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.63 Total: 5.06 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -3.74 Total: 1.09 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 1.50 Total: -47.63 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.93 Total: -16.74 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.36 -6.63 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267197407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.963 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds