Wall clock time and date at job start Tue Mar 31 2020 12:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47077 * 256.83800 * 3 2 1 5 5 N 1.46507 * 109.47081 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99812 * 274.96126 * 5 4 3 7 7 C 1.50701 * 109.47016 * 269.99675 * 6 5 4 8 8 H 1.07997 * 119.99866 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99651 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00239 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99653 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47312 * 359.97438 * 11 9 7 13 13 H 1.48489 * 109.47154 * 119.99883 * 11 9 7 14 14 H 1.48504 * 109.46935 * 240.00204 * 11 9 7 15 15 C 1.34779 * 119.99979 * 94.96041 * 5 4 3 16 16 O 1.21600 * 120.00063 * 185.66456 * 15 5 4 17 17 C 1.47436 * 119.99658 * 5.66076 * 15 5 4 18 18 C 1.39730 * 120.20612 * 55.06276 * 17 15 5 19 19 C 1.37748 * 119.92659 * 180.02562 * 18 17 15 20 20 C 1.38615 * 120.35289 * 0.02562 * 19 18 17 21 21 C 1.37956 * 120.41900 * 0.25904 * 20 19 18 22 22 N 1.48019 * 119.96532 * 179.72113 * 21 20 19 23 23 O 1.21805 * 120.00274 * 5.35026 * 22 21 20 24 24 O 1.21802 * 119.99898 * 185.35158 * 22 21 20 25 25 C 1.38951 * 120.06346 * 359.44833 * 21 20 19 26 26 N 1.38883 * 120.17541 * 180.25314 * 25 21 20 27 27 H 1.08996 * 109.47059 * 136.83750 * 3 2 1 28 28 H 1.09000 * 109.47278 * 16.83827 * 3 2 1 29 29 H 1.08996 * 109.47217 * 60.00046 * 4 3 2 30 30 H 1.09000 * 109.47089 * 300.00143 * 4 3 2 31 31 H 1.09001 * 109.47322 * 30.00131 * 6 5 4 32 32 H 1.09005 * 109.46827 * 150.00235 * 6 5 4 33 33 H 0.96995 * 119.99614 * 180.02562 * 10 9 7 34 34 H 1.07999 * 120.04200 * 0.03693 * 18 17 15 35 35 H 1.08004 * 119.82670 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.78600 * 179.97438 * 20 19 18 37 37 H 0.97001 * 119.99833 * 205.32915 * 26 25 21 38 38 H 0.96998 * 119.99745 * 25.32212 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3293 1.4046 5 7 4.5829 0.3306 1.4045 6 6 5.3164 -0.9245 1.5852 7 6 5.5679 -1.1524 3.0535 8 1 5.2162 -0.4343 3.7794 9 6 6.2472 -2.2777 3.4700 10 7 6.6760 -3.1519 2.5859 11 14 6.5584 -2.5605 5.2901 12 1 5.9796 -1.4381 6.0715 13 1 5.9225 -3.8354 5.7087 14 1 8.0210 -2.6323 5.5368 15 6 5.2558 1.4865 1.2381 16 8 6.4673 1.4753 1.1347 17 6 4.5228 2.7645 1.1813 18 6 3.6608 3.1272 2.2194 19 6 2.9784 4.3224 2.1602 20 6 3.1414 5.1690 1.0748 21 6 3.9843 4.8225 0.0391 22 7 4.1461 5.7313 -1.1180 23 8 3.6128 6.8264 -1.1116 24 8 4.8126 5.3840 -2.0765 25 6 4.6858 3.6239 0.0838 26 7 5.5390 3.2752 -0.9551 27 1 2.9709 0.7504 -0.7030 28 1 2.9718 -0.9828 -0.2977 29 1 2.7548 -0.4204 2.1076 30 1 2.7540 1.3128 1.7023 31 1 4.7280 -1.7501 1.1849 32 1 6.2688 -0.8679 1.0579 33 1 7.1535 -3.9436 2.8791 34 1 3.5297 2.4714 3.0675 35 1 2.3128 4.6013 2.9637 36 1 2.6016 6.1036 1.0376 37 1 5.7376 2.3415 -1.1270 38 1 5.9363 3.9655 -1.5088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267197407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:53 Heat of formation + Delta-G solvation = 4.904314 kcal Electronic energy + Delta-G solvation = -26468.915584 eV Core-core repulsion = 22507.409182 eV Total energy + Delta-G solvation = -3961.506402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.28109 -41.58303 -39.57759 -38.07607 -37.79377 -36.82617 -35.72334 -34.87867 -33.09926 -32.22362 -30.64497 -29.08070 -27.38131 -25.78544 -25.40110 -23.75517 -23.42649 -20.98607 -19.82516 -19.55713 -18.78371 -18.74675 -18.35591 -18.29347 -18.04538 -17.71465 -17.24504 -16.36407 -15.95171 -15.75474 -15.69678 -15.28779 -15.00543 -14.57729 -14.35293 -14.08416 -13.71094 -13.69040 -13.40306 -13.26017 -13.15061 -12.97040 -12.70681 -12.64826 -12.54187 -12.31312 -12.23820 -12.17130 -11.99753 -11.70248 -11.64178 -10.90305 -10.59001 -10.47856 -9.56591 -9.09875 -8.17368 -6.29135 -1.13442 -0.09467 0.34167 0.41490 1.41897 1.45212 1.54170 1.56237 1.75104 1.79017 2.14348 2.33596 2.45398 2.51144 2.96980 3.16078 3.33243 3.63942 3.75004 3.95345 3.98291 4.01567 4.07362 4.30463 4.46326 4.61622 4.76197 4.93233 4.97595 5.06160 5.12949 5.22413 5.34670 5.50273 5.57086 5.84000 6.01099 6.11587 6.44058 6.54542 6.59233 6.62872 6.80432 7.23469 7.43358 8.89676 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.004039 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.001421 B = 6929.974764 C = 7675.178479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.243 3.757 3 C -0.039 4.039 4 C 0.106 3.894 5 N -0.583 5.583 6 C 0.258 3.742 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.289 1.289 15 C 0.560 3.440 16 O -0.571 6.571 17 C -0.211 4.211 18 C 0.011 3.989 19 C -0.154 4.154 20 C 0.008 3.992 21 C -0.139 4.139 22 N 0.053 4.947 23 O -0.177 6.177 24 O -0.213 6.213 25 C 0.313 3.687 26 N -0.835 5.835 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.039 0.961 32 H 0.010 0.990 33 H 0.264 0.736 34 H 0.164 0.836 35 H 0.190 0.810 36 H 0.176 0.824 37 H 0.410 0.590 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 13.431 -1.937 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.074 4.074 3 C -0.080 4.080 4 C -0.018 4.018 5 N -0.312 5.312 6 C 0.137 3.863 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.186 4.186 10 N -0.565 5.565 11 Si 0.781 3.219 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.215 1.215 15 C 0.348 3.652 16 O -0.451 6.451 17 C -0.220 4.220 18 C -0.009 4.009 19 C -0.175 4.175 20 C -0.012 4.012 21 C -0.230 4.230 22 N 0.559 4.441 23 O -0.391 6.391 24 O -0.413 6.413 25 C 0.196 3.804 26 N -0.379 5.379 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.182 0.818 35 H 0.207 0.793 36 H 0.194 0.806 37 H 0.241 0.759 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.197 12.825 -1.604 16.463 hybrid contribution 1.502 -0.556 0.035 1.602 sum -8.695 12.269 -1.569 15.119 Atomic orbital electron populations 1.81252 1.14146 1.10747 1.09791 1.29056 0.94869 0.91551 0.91965 1.19767 0.80489 1.07326 1.00434 1.21736 0.79153 1.05228 0.95715 1.47985 1.06713 1.07546 1.68948 1.18921 0.91686 0.80179 0.95507 1.21778 1.36249 1.06305 0.93428 0.92100 1.25683 0.95273 0.95901 1.01742 1.70022 1.39037 1.12135 1.35318 0.85545 0.77512 0.78356 0.80475 1.18691 1.20237 1.21541 1.18190 0.86535 0.83806 0.76673 1.90807 1.15642 1.87292 1.51327 1.19497 1.07566 0.97756 0.97167 1.21883 0.87503 0.96130 0.95367 1.21307 1.03523 0.93073 0.99551 1.21376 0.90533 1.00421 0.88825 1.20749 1.13465 0.95468 0.93292 1.43589 0.97883 1.00947 1.01686 1.94497 1.49070 1.08292 1.87218 1.94329 1.39954 1.80025 1.27020 1.17253 0.86195 0.89530 0.87405 1.43117 1.48682 1.13016 1.33072 0.86097 0.85814 0.88667 0.87567 0.94293 0.97210 0.92654 0.81850 0.79266 0.80646 0.75947 0.74449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.93 18.54 20.00 0.37 -12.56 16 2 C 0.24 5.18 15.43 89.44 1.38 6.56 16 3 C -0.04 -0.70 6.02 28.79 0.17 -0.53 16 4 C 0.11 2.31 5.19 86.38 0.45 2.76 16 5 N -0.58 -18.60 2.46 -830.02 -2.04 -20.64 16 6 C 0.26 11.30 5.23 85.63 0.45 11.75 16 7 C -0.54 -26.63 9.39 25.60 0.24 -26.39 16 8 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.01 0.70 5.46 84.66 0.46 1.16 16 10 N -0.93 -50.99 13.29 21.45 0.28 -50.70 16 11 Si 0.96 41.01 29.54 68.60 2.03 43.04 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 13 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 15 C 0.56 18.47 6.30 86.67 0.55 19.02 16 16 O -0.57 -24.65 15.99 -4.03 -0.06 -24.72 16 17 C -0.21 -5.07 4.91 -19.98 -0.10 -5.17 16 18 C 0.01 0.18 7.47 22.51 0.17 0.34 16 19 C -0.15 -1.74 10.02 22.24 0.22 -1.52 16 20 C 0.01 0.11 9.54 22.29 0.21 0.33 16 21 C -0.14 -3.00 6.86 36.48 0.25 -2.75 16 22 N 0.05 1.34 4.45 -46.21 -0.21 1.13 16 23 O -0.18 -4.58 18.45 18.88 0.35 -4.23 16 24 O -0.21 -5.81 15.88 18.88 0.30 -5.51 16 25 C 0.31 7.43 6.74 38.71 0.26 7.69 16 26 N -0.84 -20.19 8.07 -50.94 -0.41 -20.60 16 27 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.09 2.18 8.11 -2.39 -0.02 2.16 16 30 H 0.11 1.77 4.43 -2.39 -0.01 1.76 16 31 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 32 H 0.01 0.51 7.35 -2.38 -0.02 0.49 16 33 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.16 2.33 7.59 -2.91 -0.02 2.30 16 35 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.18 1.80 7.60 -2.91 -0.02 1.78 16 37 H 0.41 10.03 7.74 -92.71 -0.72 9.31 16 38 H 0.42 9.81 6.09 -92.71 -0.56 9.25 16 Total: -1.00 -70.12 343.99 5.20 -64.93 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -0.13 Total: 16.62 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 4.71 Total: 13.25 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -2.00 Total: -103.37 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: 0.58 Total: -34.46 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -70.12 5.20 -64.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267197407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.831 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds