Wall clock time and date at job start Tue Mar 31 2020 11:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47407 * 2 1 4 4 C 1.46499 * 119.99997 * 265.12894 * 3 2 1 5 5 C 1.50697 * 109.46976 * 263.18259 * 4 3 2 6 6 H 1.07996 * 120.00290 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99943 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00020 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00213 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46704 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47208 * 119.99539 * 9 7 5 12 12 H 1.48502 * 109.47213 * 240.00041 * 9 7 5 13 13 C 1.34774 * 119.99692 * 85.12963 * 3 2 1 14 14 O 1.21652 * 120.00328 * 3.75936 * 13 3 2 15 15 C 1.46977 * 119.99857 * 183.76938 * 13 3 2 16 16 C 1.35812 * 125.13148 * 173.43855 * 15 13 3 17 17 C 1.46247 * 106.07920 * 180.02562 * 16 15 13 18 18 C 1.39699 * 134.19230 * 179.97438 * 17 16 15 19 19 C 1.36621 * 119.71398 * 180.02562 * 18 17 16 20 20 N 1.48016 * 119.77645 * 180.02562 * 19 18 17 21 21 O 1.21803 * 120.00502 * 359.97438 * 20 19 18 22 22 O 1.21802 * 119.99676 * 180.02562 * 20 19 18 23 23 C 1.38834 * 120.44461 * 359.97438 * 19 18 17 24 24 C 1.37797 * 120.74059 * 0.02562 * 23 19 18 25 25 C 1.39029 * 119.85598 * 0.03017 * 24 23 19 26 26 O 1.34716 * 133.23928 * 180.26762 * 25 24 23 27 27 H 1.09002 * 109.47640 * 59.99406 * 1 2 3 28 28 H 1.08998 * 109.47602 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47343 * 299.99691 * 1 2 3 30 30 H 1.09003 * 109.46835 * 240.00406 * 2 1 3 31 31 H 1.08996 * 109.47197 * 120.00617 * 2 1 3 32 32 H 1.08998 * 109.47350 * 23.18593 * 4 3 2 33 33 H 1.09005 * 109.46703 * 143.18862 * 4 3 2 34 34 H 0.97000 * 120.00245 * 180.02562 * 8 7 5 35 35 H 1.08001 * 126.95829 * 0.05083 * 16 15 13 36 36 H 1.08004 * 120.14291 * 0.05461 * 18 17 16 37 37 H 1.07991 * 119.63176 * 180.02562 * 23 19 18 38 38 H 1.08000 * 120.07548 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3641 2.0359 -1.2641 5 6 3.8498 1.9318 -1.4937 6 1 4.4741 1.4281 -0.7706 7 6 4.4123 2.4798 -2.6271 8 7 3.6523 3.0937 -3.5074 9 14 6.2539 2.3502 -2.9121 10 1 6.8792 1.6167 -1.7824 11 1 6.5085 1.6177 -4.1785 12 1 6.8380 3.7126 -3.0022 13 6 2.1495 2.0495 1.1630 14 8 1.9281 1.4848 2.2175 15 6 2.5600 3.4608 1.1573 16 6 2.6027 4.2667 2.2496 17 6 3.0636 5.5704 1.7734 18 6 3.3119 6.7998 2.3886 19 6 3.7483 7.8559 1.6398 20 7 4.0123 9.1589 2.2904 21 8 3.8400 9.2872 3.4893 22 8 4.4011 10.1033 1.6266 23 6 3.9468 7.7148 0.2730 24 6 3.7078 6.5107 -0.3529 25 6 3.2621 5.4220 0.3881 26 8 2.9548 4.1504 0.0665 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.8349 1.5480 -2.0827 33 1 2.0760 3.0863 -1.2200 34 1 4.0479 3.4789 -4.3049 35 1 2.3482 3.9989 3.2645 36 1 3.1599 6.9147 3.4517 37 1 4.2925 8.5582 -0.3062 38 1 3.8654 6.4130 -1.4168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267842563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:02 Heat of formation + Delta-G solvation = -1.715845 kcal Electronic energy + Delta-G solvation = -26452.074896 eV Core-core repulsion = 22457.988671 eV Total energy + Delta-G solvation = -3994.086225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68046 -42.04512 -39.33633 -38.05302 -36.56322 -35.65560 -32.97837 -32.92793 -31.57892 -30.90795 -29.58816 -27.25456 -26.52345 -24.71304 -23.26532 -22.70164 -22.35494 -21.43687 -19.75181 -19.15007 -18.55574 -17.65033 -17.53598 -17.19157 -16.68946 -16.06374 -15.86615 -15.14691 -14.60070 -14.52962 -14.47851 -14.13128 -13.62516 -13.46751 -13.13362 -13.00695 -12.74725 -12.58298 -12.21733 -11.83279 -11.67212 -11.54704 -11.34275 -11.16587 -11.14971 -11.11731 -10.90618 -10.66083 -10.44067 -10.29370 -9.97869 -9.80393 -9.18674 -8.69652 -8.53720 -8.01953 -6.32297 -4.38648 -0.12489 0.42868 1.37871 1.38685 1.78386 2.54915 3.10321 3.20263 3.21688 3.23713 3.45668 3.46452 4.13620 4.22294 4.31278 4.48068 4.78323 4.87700 4.95710 5.02344 5.22894 5.39261 5.53703 5.56066 5.60210 5.60829 5.67390 5.85163 5.98179 6.04126 6.12280 6.17562 6.37448 6.41589 6.48106 6.89875 7.08215 7.24917 7.60359 7.65189 7.86746 7.89316 8.41722 8.67756 9.28073 10.74929 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.004658 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.727369 B = 6009.871594 C = 7753.684089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.577 5.577 4 C 0.229 3.771 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.071 3.929 8 N -0.888 5.888 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.588 3.412 14 O -0.544 6.544 15 C 0.021 3.979 16 C -0.136 4.136 17 C -0.148 4.148 18 C 0.009 3.991 19 C -0.068 4.068 20 N 0.038 4.962 21 O -0.171 6.171 22 O -0.165 6.165 23 C -0.050 4.050 24 C -0.087 4.087 25 C 0.108 3.892 26 O -0.112 6.112 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.265 0.735 35 H 0.174 0.826 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 3.569 5.590 7.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.009 4.009 3 N -0.306 5.306 4 C 0.110 3.890 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.132 4.132 8 N -0.526 5.526 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.375 3.625 14 O -0.426 6.426 15 C -0.030 4.030 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.011 4.011 19 C -0.151 4.151 20 N 0.555 4.445 21 O -0.384 6.384 22 O -0.380 6.380 23 C -0.069 4.069 24 C -0.106 4.106 25 C 0.056 3.944 26 O -0.009 6.009 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.191 0.809 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.422 2.577 5.309 6.822 hybrid contribution 1.210 0.390 -0.165 1.282 sum -2.212 2.967 5.144 6.337 Atomic orbital electron populations 1.22131 0.96253 1.01783 1.02213 1.21396 0.93769 0.82505 1.03206 1.48324 1.60463 1.13603 1.08189 1.19805 0.96643 0.93594 0.78934 1.21396 0.92035 1.37115 1.06559 0.92195 1.24839 0.98170 0.94674 0.95556 1.69922 1.35319 1.36517 1.10878 0.86555 0.85143 0.78137 0.78420 1.19690 1.20657 1.20693 1.16724 0.78464 0.82739 0.84606 1.90801 1.53750 1.66862 1.31147 1.22361 1.01789 0.93925 0.84883 1.22540 1.03738 0.89464 0.99940 1.19689 1.07178 0.94516 0.93568 1.20019 0.91187 0.88663 1.01186 1.20454 1.15999 0.84582 0.94074 1.43510 0.97538 1.02600 1.00832 1.94524 1.56210 1.90029 0.97687 1.94523 1.47784 1.31367 1.64337 1.20649 0.96710 0.98287 0.91263 1.20052 1.00922 0.88000 1.01628 1.20308 0.95124 0.86006 0.92928 1.85010 1.65699 1.17737 1.32459 0.92396 0.91873 0.92570 0.89683 0.90657 0.93781 0.93010 0.92517 0.80881 0.82563 0.82133 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.20 37.15 0.38 -1.90 16 2 C 0.11 1.85 6.08 -4.04 -0.02 1.83 16 3 N -0.58 -11.22 2.49 -176.50 -0.44 -11.66 16 4 C 0.23 5.04 4.74 -5.20 -0.02 5.01 16 5 C -0.53 -12.96 8.34 -34.44 -0.29 -13.25 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -22.67 13.29 55.43 0.74 -21.94 16 9 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 C 0.59 11.50 7.55 -12.72 -0.10 11.40 16 14 O -0.54 -11.06 16.47 5.23 0.09 -10.97 16 15 C 0.02 0.39 6.70 -36.91 -0.25 0.14 16 16 C -0.14 -2.09 10.81 -37.24 -0.40 -2.49 16 17 C -0.15 -2.18 6.38 -105.20 -0.67 -2.86 16 18 C 0.01 0.11 9.56 -39.62 -0.38 -0.26 16 19 C -0.07 -0.92 6.81 -80.31 -0.55 -1.46 16 20 N 0.04 0.55 4.45 33.78 0.15 0.70 16 21 O -0.17 -2.55 18.41 -29.46 -0.54 -3.09 16 22 O -0.16 -2.45 18.42 -29.46 -0.54 -3.00 16 23 C -0.05 -0.63 9.52 -39.52 -0.38 -1.01 16 24 C -0.09 -1.23 10.07 -39.45 -0.40 -1.63 16 25 C 0.11 1.78 7.41 -38.35 -0.28 1.50 16 26 O -0.11 -2.16 6.39 2.76 0.02 -2.15 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 31 H 0.08 1.21 7.52 -51.93 -0.39 0.82 16 32 H 0.04 1.01 8.02 -51.93 -0.42 0.59 16 33 H 0.05 1.20 5.41 -51.93 -0.28 0.92 16 34 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 35 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.16 1.71 7.57 -52.48 -0.40 1.32 16 37 H 0.16 1.67 7.58 -52.49 -0.40 1.27 16 38 H 0.16 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -27.35 341.22 -7.83 -35.18 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -3.96 Total: 0.51 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.46 Total: -3.31 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.45 Total: -32.90 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.98 Total: -19.21 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.35 -7.83 -35.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267842563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.463 kcal (2) G-P(sol) polarization free energy of solvation -27.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds