Wall clock time and date at job start Tue Mar 31 2020 11:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47407 * 2 1 4 4 C 1.46499 * 119.99997 * 265.12894 * 3 2 1 5 5 C 1.50697 * 109.46976 * 263.18259 * 4 3 2 6 6 H 1.07996 * 120.00290 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99943 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00020 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00213 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46704 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47208 * 119.99539 * 9 7 5 12 12 H 1.48502 * 109.47213 * 240.00041 * 9 7 5 13 13 C 1.34774 * 119.99692 * 85.12963 * 3 2 1 14 14 O 1.21652 * 120.00328 * 3.75936 * 13 3 2 15 15 C 1.46977 * 119.99857 * 183.76938 * 13 3 2 16 16 C 1.35812 * 125.13148 * 173.43855 * 15 13 3 17 17 C 1.46247 * 106.07920 * 180.02562 * 16 15 13 18 18 C 1.39699 * 134.19230 * 179.97438 * 17 16 15 19 19 C 1.36621 * 119.71398 * 180.02562 * 18 17 16 20 20 N 1.48016 * 119.77645 * 180.02562 * 19 18 17 21 21 O 1.21803 * 120.00502 * 359.97438 * 20 19 18 22 22 O 1.21802 * 119.99676 * 180.02562 * 20 19 18 23 23 C 1.38834 * 120.44461 * 359.97438 * 19 18 17 24 24 C 1.37797 * 120.74059 * 0.02562 * 23 19 18 25 25 C 1.39029 * 119.85598 * 0.03017 * 24 23 19 26 26 O 1.34716 * 133.23928 * 180.26762 * 25 24 23 27 27 H 1.09002 * 109.47640 * 59.99406 * 1 2 3 28 28 H 1.08998 * 109.47602 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47343 * 299.99691 * 1 2 3 30 30 H 1.09003 * 109.46835 * 240.00406 * 2 1 3 31 31 H 1.08996 * 109.47197 * 120.00617 * 2 1 3 32 32 H 1.08998 * 109.47350 * 23.18593 * 4 3 2 33 33 H 1.09005 * 109.46703 * 143.18862 * 4 3 2 34 34 H 0.97000 * 120.00245 * 180.02562 * 8 7 5 35 35 H 1.08001 * 126.95829 * 0.05083 * 16 15 13 36 36 H 1.08004 * 120.14291 * 0.05461 * 18 17 16 37 37 H 1.07991 * 119.63176 * 180.02562 * 23 19 18 38 38 H 1.08000 * 120.07548 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3641 2.0359 -1.2641 5 6 3.8498 1.9318 -1.4937 6 1 4.4741 1.4281 -0.7706 7 6 4.4123 2.4798 -2.6271 8 7 3.6523 3.0937 -3.5074 9 14 6.2539 2.3502 -2.9121 10 1 6.8792 1.6167 -1.7824 11 1 6.5085 1.6177 -4.1785 12 1 6.8380 3.7126 -3.0022 13 6 2.1495 2.0495 1.1630 14 8 1.9281 1.4848 2.2175 15 6 2.5600 3.4608 1.1573 16 6 2.6027 4.2667 2.2496 17 6 3.0636 5.5704 1.7734 18 6 3.3119 6.7998 2.3886 19 6 3.7483 7.8559 1.6398 20 7 4.0123 9.1589 2.2904 21 8 3.8400 9.2872 3.4893 22 8 4.4011 10.1033 1.6266 23 6 3.9468 7.7148 0.2730 24 6 3.7078 6.5107 -0.3529 25 6 3.2621 5.4220 0.3881 26 8 2.9548 4.1504 0.0665 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.8349 1.5480 -2.0827 33 1 2.0760 3.0863 -1.2200 34 1 4.0479 3.4789 -4.3049 35 1 2.3482 3.9989 3.2645 36 1 3.1599 6.9147 3.4517 37 1 4.2925 8.5582 -0.3062 38 1 3.8654 6.4130 -1.4168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267842563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:01 Heat of formation + Delta-G solvation = -14.165720 kcal Electronic energy + Delta-G solvation = -26452.614763 eV Core-core repulsion = 22457.988671 eV Total energy + Delta-G solvation = -3994.626092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.92057 -43.20095 -40.79130 -39.23416 -37.71070 -37.19075 -34.77036 -34.15481 -32.79237 -32.21623 -30.83482 -28.99085 -27.69130 -25.97333 -25.02318 -23.88994 -23.54686 -22.67738 -21.07291 -20.35611 -19.74133 -18.87990 -18.82888 -18.66363 -18.23892 -17.50479 -17.33438 -16.59870 -16.13435 -15.90531 -15.64603 -15.40482 -14.83827 -14.60099 -14.51015 -14.42905 -14.24616 -13.86464 -13.64540 -13.19624 -13.16392 -12.78531 -12.74530 -12.66014 -12.49594 -12.30755 -12.29844 -12.20896 -11.84514 -11.75831 -11.61053 -11.35834 -10.61010 -10.36422 -9.84235 -9.49465 -8.21528 -6.33012 -1.26546 -0.75335 0.22654 0.24677 0.52977 1.30373 1.34684 1.40513 1.48034 1.99220 2.07398 2.11181 2.38617 2.94213 3.10259 3.17189 3.38776 3.55601 3.66332 3.85728 4.06115 4.17366 4.33808 4.41574 4.46182 4.49301 4.51354 4.68898 4.74529 4.86891 4.92422 4.97866 5.00396 5.19990 5.24456 5.30819 5.56725 5.66717 5.81728 6.01809 6.30230 6.48468 6.73798 6.96630 7.36202 8.85091 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.004658 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.727369 B = 6009.871594 C = 7753.684089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.106 3.894 3 N -0.584 5.584 4 C 0.246 3.754 5 C -0.535 4.535 6 H 0.044 0.956 7 C 0.036 3.964 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.278 1.278 11 H -0.277 1.277 12 H -0.275 1.275 13 C 0.586 3.414 14 O -0.559 6.559 15 C -0.021 4.021 16 C -0.105 4.105 17 C -0.152 4.152 18 C 0.026 3.974 19 C -0.073 4.073 20 N 0.038 4.962 21 O -0.175 6.175 22 O -0.170 6.170 23 C -0.029 4.029 24 C -0.097 4.097 25 C 0.089 3.911 26 O -0.142 6.142 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.268 0.732 35 H 0.198 0.802 36 H 0.182 0.818 37 H 0.186 0.814 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 4.477 6.379 8.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 N -0.313 5.313 4 C 0.126 3.874 5 C -0.574 4.574 6 H 0.062 0.938 7 C -0.165 4.165 8 N -0.550 5.550 9 Si 0.766 3.234 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.200 1.200 13 C 0.374 3.626 14 O -0.441 6.441 15 C -0.071 4.071 16 C -0.125 4.125 17 C -0.154 4.154 18 C 0.007 3.993 19 C -0.157 4.157 20 N 0.555 4.445 21 O -0.388 6.388 22 O -0.384 6.384 23 C -0.048 4.048 24 C -0.116 4.116 25 C 0.038 3.962 26 O -0.041 6.041 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.215 0.785 36 H 0.199 0.801 37 H 0.203 0.797 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.084 3.481 6.105 7.675 hybrid contribution 1.115 0.205 -0.353 1.187 sum -1.970 3.686 5.752 7.110 Atomic orbital electron populations 1.22044 0.94156 1.03539 1.01528 1.21611 0.95518 0.81099 1.03294 1.48340 1.60823 1.14671 1.07425 1.19405 0.95186 0.93190 0.79629 1.21476 0.93080 1.36686 1.06157 0.93752 1.25371 1.01164 0.94506 0.95449 1.69986 1.36563 1.37183 1.11261 0.85790 0.81471 0.78175 0.77977 1.20299 1.20275 1.20049 1.16899 0.78033 0.83398 0.84307 1.90769 1.54623 1.67535 1.31218 1.22260 1.05101 0.93976 0.85791 1.22865 1.00596 0.88951 1.00092 1.19683 1.07925 0.94956 0.92871 1.20207 0.89309 0.87512 1.02310 1.20556 1.16333 0.84360 0.94444 1.43584 0.97383 1.02737 1.00794 1.94526 1.56324 1.90137 0.97834 1.94527 1.47980 1.31630 1.64307 1.20879 0.94580 0.98184 0.91109 1.20161 1.01601 0.87947 1.01867 1.20750 0.95594 0.85578 0.94275 1.84901 1.66782 1.19030 1.33337 0.92786 0.88879 0.93420 0.89500 0.90581 0.95107 0.93987 0.92292 0.78486 0.80092 0.79692 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 10.20 71.98 0.73 -3.43 16 2 C 0.11 3.49 6.08 86.38 0.52 4.01 16 3 N -0.58 -23.23 2.49 -830.56 -2.06 -25.29 16 4 C 0.25 11.14 4.74 85.63 0.41 11.54 16 5 C -0.54 -26.58 8.34 25.60 0.21 -26.37 16 6 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 7 C 0.04 1.80 5.46 84.66 0.46 2.27 16 8 N -0.91 -46.86 13.29 21.45 0.28 -46.58 16 9 Si 0.94 40.18 29.54 68.60 2.03 42.21 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.59 23.25 7.55 86.53 0.65 23.91 16 14 O -0.56 -22.74 16.47 -4.20 -0.07 -22.81 16 15 C -0.02 -0.79 6.70 24.00 0.16 -0.62 16 16 C -0.10 -3.09 10.81 23.79 0.26 -2.83 16 17 C -0.15 -4.27 6.38 -20.24 -0.13 -4.40 16 18 C 0.03 0.60 9.56 22.24 0.21 0.81 16 19 C -0.07 -1.79 6.81 36.14 0.25 -1.55 16 20 N 0.04 1.02 4.45 -47.03 -0.21 0.81 16 21 O -0.17 -4.77 18.41 18.88 0.35 -4.42 16 22 O -0.17 -4.64 18.42 18.88 0.35 -4.29 16 23 C -0.03 -0.66 9.52 22.31 0.21 -0.44 16 24 C -0.10 -2.63 10.07 22.36 0.23 -2.41 16 25 C 0.09 2.91 7.41 23.07 0.17 3.08 16 26 O -0.14 -5.59 6.39 -13.03 -0.08 -5.67 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.09 2.76 8.03 -2.39 -0.02 2.74 16 31 H 0.08 2.46 7.52 -2.39 -0.02 2.44 16 32 H 0.03 1.46 8.02 -2.39 -0.02 1.44 16 33 H 0.04 2.02 5.41 -2.38 -0.01 2.01 16 34 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 35 H 0.20 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.18 3.32 7.57 -2.91 -0.02 3.30 16 37 H 0.19 3.29 7.58 -2.91 -0.02 3.27 16 38 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -58.09 341.22 6.04 -52.05 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.11 Total: 10.45 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 4.35 Total: 3.56 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.99 Total: -71.07 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: 0.54 Total: -37.19 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -58.09 6.04 -52.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267842563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.880 kcal (2) G-P(sol) polarization free energy of solvation -58.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds