Wall clock time and date at job start Tue Mar 31 2020 11:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46489 * 109.47308 * 2 1 4 4 C 1.46505 * 120.00362 * 280.73190 * 3 2 1 5 5 C 1.50698 * 109.47207 * 270.00620 * 4 3 2 6 6 H 1.07994 * 120.00140 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99595 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99506 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47179 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47104 * 120.00121 * 9 7 5 12 12 H 1.48500 * 109.47117 * 239.99841 * 9 7 5 13 13 C 1.34782 * 120.00103 * 100.73724 * 3 2 1 14 14 O 1.21591 * 120.00166 * 187.07634 * 13 3 2 15 15 C 1.47522 * 119.99718 * 7.06959 * 13 3 2 16 16 C 1.39989 * 120.60033 * 328.29854 * 15 13 3 17 17 C 1.38331 * 118.34712 * 179.70975 * 16 15 13 18 18 C 1.38364 * 119.46035 * 0.52771 * 17 16 15 19 19 C 1.50690 * 119.40520 * 179.73041 * 18 17 16 20 20 F 1.39903 * 109.46854 * 184.73040 * 19 18 17 21 21 F 1.39902 * 109.47803 * 64.73149 * 19 18 17 22 22 F 1.39901 * 109.47753 * 304.72833 * 19 18 17 23 23 N 1.31878 * 121.18146 * 359.45379 * 18 17 16 24 24 C 1.32237 * 121.80460 * 0.27994 * 23 18 17 25 25 O 1.35421 * 119.79952 * 179.97438 * 24 23 18 26 26 H 1.08992 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46628 * 300.00252 * 1 2 3 28 28 H 1.09002 * 109.47056 * 59.99314 * 1 2 3 29 29 H 1.08999 * 109.46628 * 239.99748 * 2 1 3 30 30 H 1.08995 * 109.46751 * 120.00468 * 2 1 3 31 31 H 1.09008 * 109.46600 * 30.00440 * 4 3 2 32 32 H 1.08994 * 109.47071 * 149.99955 * 4 3 2 33 33 H 0.97007 * 119.99867 * 180.02562 * 8 7 5 34 34 H 1.07995 * 120.82364 * 359.97438 * 16 15 13 35 35 H 1.08000 * 120.26835 * 180.25844 * 17 16 15 36 36 H 0.96702 * 114.00393 * 90.00095 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0399 2.1506 -1.2465 5 6 3.3633 1.9489 -1.9386 6 1 4.1135 1.3118 -1.4942 7 6 3.6162 2.5780 -3.1392 8 7 2.7025 3.3535 -3.6806 9 14 5.2570 2.3286 -3.9967 10 1 6.1052 1.4176 -3.1870 11 1 5.0291 1.7324 -5.3375 12 1 5.9410 3.6380 -4.1470 13 6 2.4481 1.9440 1.1468 14 8 2.7317 3.1260 1.1749 15 6 2.5742 1.1259 2.3679 16 6 1.7106 0.0480 2.5958 17 6 1.8744 -0.6915 3.7534 18 6 2.8693 -0.3419 4.6492 19 6 3.0427 -1.1445 5.9127 20 9 4.0266 -0.5510 6.7108 21 9 3.4303 -2.4488 5.5873 22 9 1.8322 -1.1789 6.6132 23 7 3.6720 0.6778 4.4144 24 6 3.5621 1.4140 3.3214 25 8 4.4080 2.4524 3.1215 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.2340 1.8106 -1.8972 32 1 1.9043 3.2086 -1.0227 33 1 2.8803 3.7957 -4.5254 34 1 0.9385 -0.2027 1.8836 35 1 1.2281 -1.5321 3.9584 36 1 5.2153 2.2160 2.6445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270963075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:04 Heat of formation + Delta-G solvation = -178.997542 kcal Electronic energy + Delta-G solvation = -27028.444289 eV Core-core repulsion = 22484.813813 eV Total energy + Delta-G solvation = -4543.630476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.25497 -48.76236 -48.72159 -42.36480 -40.30626 -38.57573 -37.15741 -35.26853 -34.03749 -32.47137 -31.72908 -29.55242 -27.93418 -25.56314 -24.69537 -24.46338 -23.69471 -20.95780 -20.41029 -19.74613 -19.63780 -18.91249 -18.65661 -18.27612 -17.96311 -17.33145 -16.64571 -16.27963 -16.12273 -15.79715 -15.63661 -15.47202 -15.28375 -15.14582 -14.86070 -14.85410 -14.59112 -14.38239 -14.23134 -13.77012 -13.51616 -13.36694 -13.27059 -13.07596 -12.96912 -12.69643 -12.51177 -12.27583 -12.09879 -11.70907 -11.29971 -11.11743 -10.65518 -10.61168 -10.41100 -9.53420 -8.23940 -6.38533 -0.94037 -0.28467 1.17896 1.37102 1.39534 1.49790 1.54510 1.95711 2.22579 2.26811 2.39528 2.53324 2.94958 3.06846 3.24468 3.28822 3.45075 3.64588 3.73277 4.00283 4.14165 4.29527 4.39505 4.53539 4.59051 4.87178 4.93161 4.96867 5.04933 5.21205 5.40841 5.52304 5.78143 6.02986 6.12226 6.45913 6.58749 6.70815 7.17980 7.35162 8.83556 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.003537 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.149460 B = 7913.725236 C = 8380.097941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.065 3.935 3 N -0.588 5.588 4 C 0.261 3.739 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.284 1.284 13 C 0.543 3.457 14 O -0.568 6.568 15 C -0.172 4.172 16 C -0.040 4.040 17 C -0.117 4.117 18 C 0.064 3.936 19 C 0.530 3.470 20 F -0.172 7.172 21 F -0.162 7.162 22 F -0.161 7.161 23 N -0.487 5.487 24 C 0.355 3.645 25 O -0.475 6.475 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.031 0.969 32 H 0.001 0.999 33 H 0.267 0.733 34 H 0.207 0.793 35 H 0.206 0.794 36 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 -16.164 15.508 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.056 4.056 3 N -0.318 5.318 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.210 1.210 13 C 0.330 3.670 14 O -0.448 6.448 15 C -0.179 4.179 16 C -0.065 4.065 17 C -0.136 4.136 18 C -0.076 4.076 19 C 0.475 3.525 20 F -0.153 7.153 21 F -0.143 7.143 22 F -0.143 7.143 23 N -0.206 5.206 24 C 0.175 3.825 25 O -0.284 6.284 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.049 0.951 32 H 0.019 0.981 33 H 0.076 0.924 34 H 0.223 0.777 35 H 0.223 0.777 36 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -3.666 -14.876 16.212 22.306 hybrid contribution 0.855 0.281 -1.400 1.664 sum -2.811 -14.595 14.812 20.984 Atomic orbital electron populations 1.22281 0.93640 1.04784 1.02470 1.22645 0.96115 0.81655 1.05207 1.48152 1.60728 1.15081 1.07824 1.18807 0.96468 0.90656 0.80014 1.21709 1.01391 1.29279 1.05858 0.92585 1.25808 1.00732 0.94391 0.97912 1.70048 1.35888 1.31212 1.19441 0.85393 0.79113 0.77948 0.78503 1.18954 1.19569 1.20995 1.18223 0.78450 0.86822 0.83489 1.90799 1.51210 1.17432 1.85351 1.21372 1.01325 0.99163 0.95991 1.22967 0.97337 0.89421 0.96735 1.22234 0.97167 1.02234 0.91978 1.21191 0.95804 0.94503 0.96130 1.17684 0.74428 0.77673 0.82715 1.93233 1.62852 1.83723 1.75528 1.93265 1.90984 1.37506 1.92532 1.93261 1.44509 1.96347 1.80155 1.66660 1.27592 1.05315 1.21064 1.18929 0.90808 0.85725 0.87067 1.84753 1.35371 1.29184 1.79099 0.86948 0.91526 0.93361 0.90303 0.86444 0.95065 0.98120 0.92383 0.77722 0.77665 0.71919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 9.16 71.98 0.66 -2.77 16 2 C 0.07 1.69 5.60 86.38 0.48 2.17 16 3 N -0.59 -23.15 2.47 -829.94 -2.05 -25.20 16 4 C 0.26 13.37 5.20 85.63 0.45 13.81 16 5 C -0.54 -29.83 9.39 25.60 0.24 -29.59 16 6 H 0.06 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.61 5.46 84.66 0.46 1.07 16 8 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 9 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.54 22.16 7.33 86.69 0.64 22.79 16 14 O -0.57 -29.25 15.39 13.76 0.21 -29.04 16 15 C -0.17 -5.21 5.58 -19.91 -0.11 -5.32 16 16 C -0.04 -0.76 7.58 22.72 0.17 -0.59 16 17 C -0.12 -1.73 9.57 22.32 0.21 -1.52 16 18 C 0.06 1.35 6.27 42.58 0.27 1.62 16 19 C 0.53 9.98 3.31 71.23 0.24 10.22 16 20 F -0.17 -3.99 16.84 44.97 0.76 -3.23 16 21 F -0.16 -2.72 17.28 44.97 0.78 -1.94 16 22 F -0.16 -2.70 17.16 44.97 0.77 -1.92 16 23 N -0.49 -13.71 9.73 -296.07 -2.88 -16.59 16 24 C 0.36 11.18 7.74 85.13 0.66 11.84 16 25 O -0.47 -16.13 12.12 -69.39 -0.84 -16.97 16 26 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.19 7.16 -2.39 -0.02 1.17 16 28 H 0.05 1.22 7.73 -2.39 -0.02 1.20 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.12 2.26 3.88 -2.57 -0.01 2.25 16 31 H 0.03 1.61 7.66 -2.38 -0.02 1.59 16 32 H 0.00 0.04 7.34 -2.39 -0.02 0.02 16 33 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 34 H 0.21 2.93 3.05 -2.91 -0.01 2.93 16 35 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.42 10.76 9.06 -74.06 -0.67 10.09 16 Total: -1.00 -76.85 323.66 3.92 -72.93 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.50 Total: 6.97 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 4.36 Total: 23.74 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -4.65 Total: -95.86 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.63 Total: -46.02 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 2.31 Total: -7.10 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -76.85 3.92 -72.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270963075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.067 kcal (2) G-P(sol) polarization free energy of solvation -76.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds