Wall clock time and date at job start Tue Mar 31 2020 11:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46492 * 119.99961 * 2 1 4 4 C 1.52999 * 109.47613 * 270.00188 * 3 2 1 5 5 F 1.39903 * 109.47021 * 60.00129 * 4 3 2 6 6 F 1.39903 * 109.47384 * 179.97438 * 4 3 2 7 7 F 1.39893 * 109.47028 * 300.00422 * 4 3 2 8 8 C 1.34773 * 119.99596 * 180.02562 * 2 1 3 9 9 O 1.21592 * 119.99529 * 179.97438 * 8 2 1 10 10 N 1.34773 * 120.00378 * 0.02562 * 8 2 1 11 11 C 1.39947 * 120.00122 * 174.68996 * 10 8 2 12 12 C 1.38959 * 120.03117 * 326.34144 * 11 10 8 13 13 C 1.38167 * 120.06589 * 180.02562 * 12 11 10 14 14 C 1.38170 * 120.13393 * 359.72435 * 13 12 11 15 15 C 1.38906 * 120.07199 * 0.55152 * 14 13 12 16 16 O 1.35749 * 120.03463 * 179.72168 * 15 14 13 17 17 C 1.34821 * 116.99972 * 173.82758 * 16 15 14 18 18 H 1.07994 * 120.00446 * 354.58767 * 17 16 15 19 19 C 1.38660 * 120.00241 * 174.59567 * 17 16 15 20 20 N 1.31552 * 120.00212 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99552 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47033 * 90.00286 * 21 19 17 23 23 H 1.48504 * 109.46910 * 209.99908 * 21 19 17 24 24 H 1.48503 * 109.47415 * 330.00071 * 21 19 17 25 25 C 1.38701 * 120.03888 * 146.36477 * 11 10 8 26 26 H 1.09002 * 109.46560 * 269.99978 * 1 2 3 27 27 H 1.08994 * 109.47071 * 29.99288 * 1 2 3 28 28 H 1.09000 * 109.46967 * 149.99846 * 1 2 3 29 29 H 1.09005 * 109.47452 * 30.00353 * 3 2 1 30 30 H 1.08998 * 109.47468 * 149.99872 * 3 2 1 31 31 H 0.96994 * 120.00242 * 354.68844 * 10 8 2 32 32 H 1.07995 * 119.97298 * 0.02562 * 12 11 10 33 33 H 1.07999 * 119.93232 * 180.02562 * 13 12 11 34 34 H 1.07999 * 119.95936 * 180.27487 * 14 13 12 35 35 H 0.97002 * 119.99865 * 179.97438 * 20 19 17 36 36 H 1.07998 * 120.06862 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7105 -1.4424 5 9 1.2301 1.8778 -2.1019 6 9 3.1516 2.9224 -1.4424 7 9 3.2086 0.7355 -2.1020 8 6 2.1389 -1.1672 -0.0005 9 8 3.3548 -1.1672 -0.0010 10 7 1.4650 -2.3344 -0.0016 11 6 2.1603 -3.5437 -0.1143 12 6 3.3179 -3.6116 -0.8799 13 6 4.0046 -4.8053 -0.9921 14 6 3.5460 -5.9334 -0.3392 15 6 2.3862 -5.8733 0.4229 16 8 1.9332 -6.9835 1.0594 17 6 0.8775 -6.8286 1.8836 18 1 0.4868 -5.8414 2.0810 19 6 0.2935 -7.9369 2.4780 20 7 -0.7362 -7.7857 3.2826 21 14 0.9691 -9.6446 2.1362 22 1 2.0181 -9.9711 3.1355 23 1 -0.1297 -10.6393 2.2291 24 1 1.5560 -9.6811 0.7726 25 6 1.6943 -4.6758 0.5376 26 1 -0.3632 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6085 2.0284 0.5139 30 1 3.1500 1.1384 0.5138 31 1 0.4982 -2.3363 0.0758 32 1 3.6814 -2.7305 -1.3877 33 1 4.9044 -4.8555 -1.5873 34 1 4.0874 -6.8639 -0.4253 35 1 -1.1450 -8.5611 3.6981 36 1 0.7944 -4.6258 1.1326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276249785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:07 Heat of formation + Delta-G solvation = -164.249833 kcal Electronic energy + Delta-G solvation = -26581.623556 eV Core-core repulsion = 22038.632589 eV Total energy + Delta-G solvation = -4542.990968 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.26730 -47.83705 -47.69308 -40.73259 -39.03921 -37.01709 -35.80979 -34.46428 -32.37744 -30.60135 -29.32034 -28.59722 -26.82013 -25.23880 -24.00193 -21.99444 -21.78713 -19.99051 -19.08576 -18.71708 -18.45600 -17.89116 -17.70001 -17.50561 -16.20209 -15.61604 -15.21712 -15.08450 -14.70150 -14.65734 -14.35725 -14.21492 -14.18839 -13.98082 -13.90098 -13.87347 -13.67275 -13.41154 -13.13691 -12.99611 -12.63895 -12.39760 -12.29282 -12.14819 -11.74815 -11.25294 -10.99314 -10.72219 -10.34461 -10.15075 -9.77757 -9.52721 -9.28040 -8.86807 -7.82892 -7.30590 -6.44652 -4.11803 1.85945 2.12905 2.28923 2.49431 3.09955 3.22071 3.24683 3.39310 3.58258 3.61322 3.80802 4.04192 4.22035 4.49104 4.61136 4.64744 4.86530 4.91661 5.06078 5.06606 5.29857 5.55970 5.76353 5.90646 5.96342 6.11935 6.15010 6.32918 6.55210 6.86492 7.01523 7.18220 7.20989 7.56868 7.72311 7.77033 8.00227 8.38129 8.91020 9.53578 10.63069 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.027034 B = 0.002955 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.495858 B = 9472.621956 C =10226.221472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.632 5.632 3 C 0.096 3.904 4 C 0.431 3.569 5 F -0.186 7.186 6 F -0.184 7.184 7 F -0.171 7.171 8 C 0.706 3.294 9 O -0.555 6.555 10 N -0.675 5.675 11 C 0.194 3.806 12 C -0.196 4.196 13 C -0.063 4.063 14 C -0.200 4.200 15 C 0.175 3.825 16 O -0.216 6.216 17 C -0.389 4.389 18 H 0.104 0.896 19 C 0.064 3.936 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.244 4.244 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.405 0.595 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.279 0.721 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 18.576 -7.405 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.370 5.370 3 C -0.031 4.031 4 C 0.375 3.625 5 F -0.168 7.168 6 F -0.165 7.165 7 F -0.152 7.152 8 C 0.408 3.592 9 O -0.429 6.429 10 N -0.323 5.323 11 C 0.100 3.900 12 C -0.217 4.217 13 C -0.082 4.082 14 C -0.220 4.220 15 C 0.122 3.878 16 O -0.121 6.121 17 C -0.465 4.465 18 H 0.122 0.878 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.265 4.265 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.242 0.758 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.330 18.249 -7.290 19.789 hybrid contribution -0.581 -0.451 -0.160 0.752 sum 1.749 17.798 -7.450 19.374 Atomic orbital electron populations 1.21983 0.78240 1.04205 1.02851 1.46815 1.07106 1.03763 1.79284 1.22420 1.02860 0.87360 0.90432 1.21416 0.74207 0.75131 0.91784 1.93163 1.44430 1.95401 1.83808 1.93185 1.79753 1.46569 1.97023 1.93260 1.76354 1.62359 1.83250 1.15795 0.85392 0.80151 0.77837 1.90983 1.10905 1.85495 1.55522 1.42663 1.10277 1.03536 1.75802 1.17196 0.93632 0.83176 0.95957 1.20651 0.98046 0.98559 1.04438 1.20535 0.98356 0.91593 0.97752 1.20251 0.97721 0.99459 1.04553 1.18782 0.92084 0.86126 0.90789 1.83614 1.45908 1.29533 1.53014 1.20716 1.07275 0.96996 1.21509 0.87839 1.24461 0.94818 0.99393 0.95287 1.69640 1.20907 1.32058 1.29279 0.86177 0.78610 0.81880 0.80228 1.19845 1.20872 1.18275 1.20878 1.05495 0.92578 1.07599 0.91392 0.89935 0.90534 0.85805 0.85069 0.75762 0.85943 0.86387 0.86347 0.91065 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 9.95 59.85 0.60 1.06 16 2 N -0.63 -6.43 2.79 -187.35 -0.52 -6.95 16 3 C 0.10 0.79 5.44 -4.05 -0.02 0.77 16 4 C 0.43 4.28 3.29 37.16 0.12 4.40 16 5 F -0.19 -1.82 16.23 2.25 0.04 -1.79 16 6 F -0.18 -1.77 17.32 2.25 0.04 -1.73 16 7 F -0.17 -2.28 16.24 2.25 0.04 -2.25 16 8 C 0.71 10.33 7.61 -86.93 -0.66 9.67 16 9 O -0.55 -9.94 13.02 5.28 0.07 -9.87 16 10 N -0.67 -10.09 5.17 -14.24 -0.07 -10.17 16 11 C 0.19 3.62 6.27 -83.71 -0.52 3.09 16 12 C -0.20 -3.65 8.65 -39.34 -0.34 -3.99 16 13 C -0.06 -1.13 10.03 -39.63 -0.40 -1.53 16 14 C -0.20 -3.98 9.99 -39.36 -0.39 -4.37 16 15 C 0.17 3.98 6.64 -39.14 -0.26 3.72 16 16 O -0.22 -5.59 8.58 0.08 0.00 -5.58 16 17 C -0.39 -10.71 9.90 30.89 0.31 -10.41 16 18 H 0.10 2.89 5.53 -52.49 -0.29 2.60 16 19 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 20 N -0.88 -24.89 13.96 55.48 0.77 -24.12 16 21 Si 0.91 21.34 28.62 -169.99 -4.86 16.48 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 25 C -0.24 -5.13 9.04 -39.21 -0.35 -5.48 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.42 7.25 -51.93 -0.38 0.04 16 28 H 0.08 0.51 6.44 -51.93 -0.33 0.17 16 29 H 0.12 0.53 8.07 -51.93 -0.42 0.11 16 30 H 0.13 1.16 7.42 -51.93 -0.39 0.77 16 31 H 0.41 4.86 6.63 -40.82 -0.27 4.59 16 32 H 0.12 2.28 6.43 -52.49 -0.34 1.95 16 33 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.14 2.92 5.71 -52.49 -0.30 2.62 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -32.60 321.63 -4.80 -37.40 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.12 Total: 5.14 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.03 Total: -1.41 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.18 Total: -41.24 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.07 Total: -15.45 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.11 Total: -5.77 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.60 -4.80 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276249785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.852 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds