Wall clock time and date at job start Tue Mar 31 2020 11:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46492 * 119.99961 * 2 1 4 4 C 1.52999 * 109.47613 * 270.00188 * 3 2 1 5 5 F 1.39903 * 109.47021 * 60.00129 * 4 3 2 6 6 F 1.39903 * 109.47384 * 179.97438 * 4 3 2 7 7 F 1.39893 * 109.47028 * 300.00422 * 4 3 2 8 8 C 1.34773 * 119.99596 * 180.02562 * 2 1 3 9 9 O 1.21592 * 119.99529 * 179.97438 * 8 2 1 10 10 N 1.34773 * 120.00378 * 0.02562 * 8 2 1 11 11 C 1.39947 * 120.00122 * 174.68996 * 10 8 2 12 12 C 1.38959 * 120.03117 * 326.34144 * 11 10 8 13 13 C 1.38167 * 120.06589 * 180.02562 * 12 11 10 14 14 C 1.38170 * 120.13393 * 359.72435 * 13 12 11 15 15 C 1.38906 * 120.07199 * 0.55152 * 14 13 12 16 16 O 1.35749 * 120.03463 * 179.72168 * 15 14 13 17 17 C 1.34821 * 116.99972 * 173.82758 * 16 15 14 18 18 H 1.07994 * 120.00446 * 354.58767 * 17 16 15 19 19 C 1.38660 * 120.00241 * 174.59567 * 17 16 15 20 20 N 1.31552 * 120.00212 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99552 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47033 * 90.00286 * 21 19 17 23 23 H 1.48504 * 109.46910 * 209.99908 * 21 19 17 24 24 H 1.48503 * 109.47415 * 330.00071 * 21 19 17 25 25 C 1.38701 * 120.03888 * 146.36477 * 11 10 8 26 26 H 1.09002 * 109.46560 * 269.99978 * 1 2 3 27 27 H 1.08994 * 109.47071 * 29.99288 * 1 2 3 28 28 H 1.09000 * 109.46967 * 149.99846 * 1 2 3 29 29 H 1.09005 * 109.47452 * 30.00353 * 3 2 1 30 30 H 1.08998 * 109.47468 * 149.99872 * 3 2 1 31 31 H 0.96994 * 120.00242 * 354.68844 * 10 8 2 32 32 H 1.07995 * 119.97298 * 0.02562 * 12 11 10 33 33 H 1.07999 * 119.93232 * 180.02562 * 13 12 11 34 34 H 1.07999 * 119.95936 * 180.27487 * 14 13 12 35 35 H 0.97002 * 119.99865 * 179.97438 * 20 19 17 36 36 H 1.07998 * 120.06862 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7105 -1.4424 5 9 1.2301 1.8778 -2.1019 6 9 3.1516 2.9224 -1.4424 7 9 3.2086 0.7355 -2.1020 8 6 2.1389 -1.1672 -0.0005 9 8 3.3548 -1.1672 -0.0010 10 7 1.4650 -2.3344 -0.0016 11 6 2.1603 -3.5437 -0.1143 12 6 3.3179 -3.6116 -0.8799 13 6 4.0046 -4.8053 -0.9921 14 6 3.5460 -5.9334 -0.3392 15 6 2.3862 -5.8733 0.4229 16 8 1.9332 -6.9835 1.0594 17 6 0.8775 -6.8286 1.8836 18 1 0.4868 -5.8414 2.0810 19 6 0.2935 -7.9369 2.4780 20 7 -0.7362 -7.7857 3.2826 21 14 0.9691 -9.6446 2.1362 22 1 2.0181 -9.9711 3.1355 23 1 -0.1297 -10.6393 2.2291 24 1 1.5560 -9.6811 0.7726 25 6 1.6943 -4.6758 0.5376 26 1 -0.3632 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6085 2.0284 0.5139 30 1 3.1500 1.1384 0.5138 31 1 0.4982 -2.3363 0.0758 32 1 3.6814 -2.7305 -1.3877 33 1 4.9044 -4.8555 -1.5873 34 1 4.0874 -6.8639 -0.4253 35 1 -1.1450 -8.5611 3.6981 36 1 0.7944 -4.6258 1.1326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276249785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:06 Heat of formation + Delta-G solvation = -185.052064 kcal Electronic energy + Delta-G solvation = -26582.525609 eV Core-core repulsion = 22038.632589 eV Total energy + Delta-G solvation = -4543.893020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.07952 -48.61025 -48.57490 -41.93370 -40.65786 -38.52330 -36.88412 -35.81710 -34.38816 -31.61137 -30.83644 -29.93691 -27.64053 -27.14526 -24.93753 -23.43628 -23.24316 -21.25629 -20.25612 -19.61505 -19.53583 -19.41532 -18.99220 -18.51801 -17.45727 -16.98257 -16.59288 -16.51492 -15.86590 -15.71003 -15.61235 -15.46216 -15.43790 -15.10710 -15.01366 -14.75491 -14.72764 -14.69825 -14.37379 -14.17396 -13.95915 -13.61402 -13.38439 -13.23749 -13.06903 -12.78727 -12.73532 -12.39584 -12.06953 -11.58412 -11.38175 -11.21228 -10.82080 -10.13535 -9.39284 -8.91525 -8.48388 -6.20842 0.39493 0.65433 1.17046 1.35100 1.38629 1.54631 1.62166 2.02812 2.30281 2.59989 2.77804 2.84459 3.04308 3.10846 3.12768 3.26607 3.95465 4.08125 4.11365 4.28847 4.31246 4.42177 4.55377 4.60600 4.66248 4.82026 4.91224 5.04095 5.29121 5.35701 5.47117 5.60549 5.68451 5.76936 5.91198 6.21944 6.59966 6.86303 7.22759 7.59586 8.62782 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.027034 B = 0.002955 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.495858 B = 9472.621956 C =10226.221472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.624 5.624 3 C 0.096 3.904 4 C 0.430 3.570 5 F -0.185 7.185 6 F -0.182 7.182 7 F -0.195 7.195 8 C 0.702 3.298 9 O -0.591 6.591 10 N -0.672 5.672 11 C 0.199 3.801 12 C -0.191 4.191 13 C -0.052 4.052 14 C -0.201 4.201 15 C 0.142 3.858 16 O -0.239 6.239 17 C -0.398 4.398 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.921 5.921 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.261 1.261 25 C -0.253 4.253 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.171 0.829 30 H 0.125 0.875 31 H 0.418 0.582 32 H 0.128 0.872 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.284 0.716 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 19.785 -8.361 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.360 5.360 3 C -0.030 4.030 4 C 0.374 3.626 5 F -0.166 7.166 6 F -0.163 7.163 7 F -0.176 7.176 8 C 0.404 3.596 9 O -0.468 6.468 10 N -0.321 5.321 11 C 0.104 3.896 12 C -0.212 4.212 13 C -0.070 4.070 14 C -0.221 4.221 15 C 0.092 3.908 16 O -0.147 6.147 17 C -0.474 4.474 18 H 0.101 0.899 19 C -0.186 4.186 20 N -0.561 5.561 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.186 1.186 25 C -0.275 4.275 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.188 0.812 30 H 0.143 0.857 31 H 0.258 0.742 32 H 0.146 0.854 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.094 0.906 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.860 19.532 -8.265 21.401 hybrid contribution -0.680 -0.501 -0.005 0.845 sum 2.180 19.031 -8.270 20.865 Atomic orbital electron populations 1.22277 0.75898 1.05352 1.04426 1.46856 1.08509 1.02930 1.77693 1.22719 1.03495 0.87348 0.89447 1.21661 0.73902 0.74742 0.92279 1.93166 1.44155 1.95355 1.83936 1.93189 1.79773 1.46349 1.97027 1.93214 1.77082 1.63435 1.83898 1.15971 0.85104 0.80937 0.77544 1.90951 1.12545 1.86203 1.57129 1.42582 1.10926 1.02826 1.75767 1.17209 0.93705 0.83810 0.94887 1.20915 0.97671 0.99063 1.03587 1.20960 0.99053 0.90281 0.96734 1.20534 0.96727 1.00963 1.03879 1.19312 0.93466 0.86056 0.91945 1.83559 1.45988 1.30931 1.54173 1.20681 1.07854 0.96491 1.22359 0.89920 1.25226 0.95182 1.02955 0.95201 1.69715 1.22390 1.33268 1.30770 0.85261 0.78328 0.77672 0.79770 1.19245 1.19414 1.18560 1.20838 1.05285 0.93256 1.08081 0.89616 0.87637 0.90620 0.81157 0.85693 0.74232 0.85444 0.82441 0.84737 0.90607 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 9.95 127.77 1.27 1.92 16 2 N -0.62 -11.27 2.79 -864.91 -2.41 -13.68 16 3 C 0.10 1.32 5.44 86.38 0.47 1.79 16 4 C 0.43 7.70 3.29 71.98 0.24 7.93 16 5 F -0.18 -3.17 16.23 44.97 0.73 -2.44 16 6 F -0.18 -3.17 17.32 44.97 0.78 -2.39 16 7 F -0.19 -5.01 16.24 44.97 0.73 -4.28 16 8 C 0.70 19.62 7.61 179.06 1.36 20.99 16 9 O -0.59 -20.59 13.02 -4.01 -0.05 -20.64 16 10 N -0.67 -19.54 5.17 -317.23 -1.64 -21.18 16 11 C 0.20 7.32 6.27 38.13 0.24 7.56 16 12 C -0.19 -6.82 8.65 22.43 0.19 -6.62 16 13 C -0.05 -1.72 10.03 22.24 0.22 -1.50 16 14 C -0.20 -7.75 9.99 22.41 0.22 -7.53 16 15 C 0.14 6.56 6.64 22.56 0.15 6.71 16 16 O -0.24 -12.68 8.58 -22.64 -0.19 -12.87 16 17 C -0.40 -22.70 9.90 67.92 0.67 -22.02 16 18 H 0.08 4.90 5.53 -2.91 -0.02 4.88 16 19 C 0.01 0.74 5.49 84.84 0.47 1.20 16 20 N -0.92 -53.45 13.96 21.61 0.30 -53.15 16 21 Si 0.97 44.44 28.62 68.60 1.96 46.40 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 25 C -0.25 -10.86 9.04 22.51 0.20 -10.65 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.11 0.68 7.25 -2.39 -0.02 0.67 16 28 H 0.08 0.84 6.44 -2.39 -0.02 0.82 16 29 H 0.17 0.75 8.07 -2.38 -0.02 0.73 16 30 H 0.12 1.97 7.42 -2.39 -0.02 1.95 16 31 H 0.42 9.71 6.63 -92.71 -0.61 9.10 16 32 H 0.13 4.52 6.43 -2.91 -0.02 4.50 16 33 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 35 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.12 5.50 5.71 -2.91 -0.02 5.48 16 Total: -1.00 -72.47 321.63 6.46 -66.00 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.55 Total: 18.45 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.71 Total: -0.22 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -3.75 Total: -88.01 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.25 Total: -33.51 kcal Atomic # 9 Polarization: -11.35 SS G_CDS: 2.24 Total: -9.11 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.96 Total: 46.40 kcal Total: -72.47 6.46 -66.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276249785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.050 kcal (2) G-P(sol) polarization free energy of solvation -72.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds