Wall clock time and date at job start Tue Mar 31 2020 11:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47286 * 294.78438 * 3 2 1 5 5 C 1.33335 * 119.99820 * 85.34290 * 4 3 2 6 6 H 1.07994 * 120.00090 * 166.73323 * 5 4 3 7 7 C 1.46782 * 119.99713 * 346.73201 * 5 4 3 8 8 N 1.29316 * 120.00438 * 359.36731 * 7 5 4 9 9 Si 1.86801 * 119.99861 * 179.36797 * 7 5 4 10 10 H 1.48499 * 109.47342 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47239 * 120.00103 * 9 7 5 12 12 H 1.48500 * 109.47248 * 240.00093 * 9 7 5 13 13 C 1.34779 * 120.00370 * 265.34106 * 4 3 2 14 14 O 1.21477 * 120.00048 * 184.01592 * 13 4 3 15 15 C 1.47704 * 120.00090 * 4.02071 * 13 4 3 16 16 C 1.39615 * 120.12570 * 293.34291 * 15 13 4 17 17 C 1.38428 * 119.78853 * 180.25192 * 16 15 13 18 18 O 1.35909 * 119.98453 * 179.77032 * 17 16 15 19 19 C 1.42895 * 117.00213 * 179.72504 * 18 17 16 20 20 C 1.52998 * 109.47371 * 180.02562 * 19 18 17 21 21 C 1.38879 * 120.03323 * 359.49225 * 17 16 15 22 22 C 1.38260 * 120.25933 * 0.25688 * 21 17 16 23 23 C 1.37982 * 120.21606 * 359.97438 * 22 21 17 24 24 N 1.48013 * 120.02664 * 179.97438 * 23 22 21 25 25 O 1.31704 * 119.99920 * 353.81627 * 24 23 22 26 26 O 1.31697 * 120.00545 * 173.82245 * 24 23 22 27 27 H 4.40634 * 5.51381 * 179.97438 * 4 1 2 28 28 H 1.09008 * 109.46493 * 174.79124 * 3 2 1 29 29 H 1.08997 * 109.47438 * 54.79569 * 3 2 1 30 30 H 0.97000 * 120.00427 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.10622 * 0.02562 * 16 15 13 32 32 H 1.09005 * 109.46946 * 300.00038 * 19 18 17 33 33 H 1.09001 * 109.47442 * 59.99576 * 19 18 17 34 34 H 1.08999 * 109.47023 * 59.99695 * 20 19 18 35 35 H 1.08997 * 109.47300 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.46921 * 299.99814 * 20 19 18 37 37 H 1.08003 * 119.87082 * 180.27787 * 21 17 16 38 38 H 1.07998 * 119.89640 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5781 1.2539 5 6 3.2691 -1.8995 1.3705 6 1 3.8228 -2.3150 2.1994 7 6 2.6644 -2.7895 0.3721 8 7 1.9910 -2.2927 -0.6138 9 14 2.8677 -4.6401 0.5256 10 1 3.6749 -4.9511 1.7326 11 1 1.5314 -5.2765 0.6469 12 1 3.5577 -5.1640 -0.6805 13 6 3.4483 0.2251 2.2898 14 8 3.9221 -0.2480 3.3034 15 6 3.2160 1.6805 2.1926 16 6 3.9535 2.4491 1.2900 17 6 3.7337 3.8134 1.2084 18 8 4.4526 4.5661 0.3346 19 6 4.1696 5.9663 0.2988 20 6 5.0701 6.6424 -0.7370 21 6 2.7749 4.4124 2.0150 22 6 2.0399 3.6521 2.9057 23 6 2.2537 2.2921 2.9991 24 7 1.4649 1.4823 3.9544 25 8 0.6468 2.0736 4.8004 26 8 1.5811 0.1704 3.9587 27 1 -1.0498 0.0001 0.0003 28 1 3.0088 1.0244 -0.0933 29 1 3.0097 -0.5916 -0.8397 30 1 1.5917 -2.8808 -1.2737 31 1 4.6956 1.9813 0.6602 32 1 3.1252 6.1190 0.0266 33 1 4.3561 6.3999 1.2813 34 1 4.8831 6.2087 -1.7193 35 1 4.8545 7.7105 -0.7639 36 1 6.1146 6.4897 -0.4652 37 1 2.6024 5.4764 1.9459 38 1 1.2954 4.1239 3.5298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283180128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:03 Heat of formation + Delta-G solvation = 47.854486 kcal Electronic energy + Delta-G solvation = -27000.890998 eV Core-core repulsion = 23008.954304 eV Total energy + Delta-G solvation = -3991.936694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.05910 -40.64454 -39.86767 -38.25362 -37.20643 -35.35542 -34.24495 -33.36562 -33.23656 -32.56563 -31.44969 -28.42015 -27.70921 -26.66496 -25.23756 -23.77057 -23.25036 -21.50283 -19.97986 -19.69534 -19.34716 -18.97333 -18.40312 -17.94668 -17.23201 -17.18297 -16.86323 -16.74443 -16.07431 -15.79925 -15.61406 -15.10952 -14.78311 -14.53757 -14.41216 -14.29105 -14.08434 -13.42713 -13.33896 -13.17836 -13.07984 -12.93280 -12.51989 -12.43802 -12.14419 -12.10934 -11.96948 -11.77913 -11.72212 -11.48246 -11.20891 -10.74082 -10.66623 -10.35994 -10.13461 -9.85593 -8.52667 -5.77926 -1.80590 -0.34154 0.05675 0.23281 1.27296 1.39302 1.50716 1.69609 1.83337 1.97064 2.18777 2.22967 2.32145 2.80429 2.97751 3.23001 3.45835 3.52799 3.73695 3.78608 3.91681 4.11966 4.12812 4.17875 4.40954 4.44991 4.49523 4.61152 4.72814 4.78870 4.83704 4.96117 5.00303 5.12551 5.18225 5.30252 5.31871 5.71439 5.81457 6.06192 6.32245 6.99129 7.03885 7.25314 7.94450 8.37910 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.004918 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.804827 B = 5691.531324 C = 6685.073319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.141 4.141 3 C 0.217 3.783 4 N -0.396 5.396 5 C -0.369 4.369 6 H 0.082 0.918 7 C 0.016 3.984 8 N -0.830 5.830 9 Si 0.996 3.004 10 H -0.275 1.275 11 H -0.273 1.273 12 H -0.253 1.253 13 C 0.442 3.558 14 O -0.615 6.615 15 C 0.002 3.998 16 C -0.152 4.152 17 C 0.212 3.788 18 O -0.306 6.306 19 C 0.031 3.969 20 C -0.153 4.153 21 C -0.186 4.186 22 C 0.002 3.998 23 C -0.052 4.052 24 N -0.006 5.006 25 O -0.185 6.185 26 O -0.242 6.242 27 H 0.230 0.770 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.289 0.711 31 H 0.160 0.840 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.207 0.793 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 20.470 -7.232 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.143 4.143 3 C 0.095 3.905 4 N -0.109 5.109 5 C -0.498 4.498 6 H 0.100 0.900 7 C -0.196 4.196 8 N -0.462 5.462 9 Si 0.818 3.182 10 H -0.200 1.200 11 H -0.199 1.199 12 H -0.177 1.177 13 C 0.233 3.767 14 O -0.503 6.503 15 C -0.003 4.003 16 C -0.172 4.172 17 C 0.163 3.837 18 O -0.218 6.218 19 C -0.043 4.043 20 C -0.210 4.210 21 C -0.205 4.205 22 C -0.017 4.017 23 C -0.142 4.142 24 N 0.458 4.542 25 O -0.380 6.380 26 O -0.415 6.415 27 H 0.246 0.754 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.102 0.898 31 H 0.177 0.823 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.224 0.776 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.427 20.322 -7.524 21.806 hybrid contribution -0.666 -1.690 0.764 1.971 sum 1.760 18.632 -6.761 19.899 Atomic orbital electron populations 1.25103 0.96401 1.05258 1.01081 1.23421 0.94987 0.96451 0.99452 1.18952 0.84789 0.98230 0.88540 1.42743 1.51837 1.06267 1.10038 1.20630 1.35413 0.81704 1.12096 0.90048 1.27601 0.93223 1.04721 0.94020 1.69037 1.27163 1.38599 1.11447 0.84850 0.78545 0.75680 0.79126 1.20000 1.19865 1.17712 1.17801 0.89029 0.85915 0.83940 1.90568 1.52110 1.75976 1.31687 1.19768 0.92695 0.95148 0.92738 1.20560 1.03350 0.92073 1.01236 1.19031 0.88139 0.89721 0.86835 1.86198 1.57749 1.23173 1.54671 1.23493 1.02330 0.75718 1.02716 1.21846 0.99703 1.01358 0.98100 1.21740 0.97693 1.03282 0.97778 1.21182 0.97291 0.87535 0.95719 1.20593 1.01304 0.92516 0.99753 1.50635 0.99399 1.03705 1.00509 1.96074 1.33609 1.73599 1.34683 1.96483 1.75269 0.89607 1.80147 0.75362 0.89121 0.85989 0.89822 0.82257 0.89057 0.89049 0.91911 0.87607 0.91942 0.77625 0.79746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.20 19.25 74.32 1.43 -9.77 16 2 C -0.14 -6.63 11.25 31.13 0.35 -6.28 16 3 C 0.22 9.93 5.05 84.58 0.43 10.36 16 4 N -0.40 -21.43 2.50 -643.97 -1.61 -23.04 16 5 C -0.37 -21.49 9.67 86.70 0.84 -20.66 16 6 H 0.08 5.20 7.26 -2.91 -0.02 5.17 16 7 C 0.02 0.83 5.51 87.30 0.48 1.31 16 8 N -0.83 -40.88 8.22 23.26 0.19 -40.69 16 9 Si 1.00 41.73 29.65 68.60 2.03 43.76 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 13 C 0.44 24.07 5.05 86.74 0.44 24.51 16 14 O -0.61 -39.19 15.17 17.78 0.27 -38.92 16 15 C 0.00 0.10 4.74 -20.10 -0.10 0.00 16 16 C -0.15 -4.81 7.65 22.65 0.17 -4.64 16 17 C 0.21 4.70 6.68 22.47 0.15 4.85 16 18 O -0.31 -5.38 10.13 -92.53 -0.94 -6.32 16 19 C 0.03 0.25 5.46 71.98 0.39 0.65 16 20 C -0.15 -1.01 10.28 71.98 0.74 -0.27 16 21 C -0.19 -3.26 9.03 22.43 0.20 -3.05 16 22 C 0.00 0.05 9.56 22.21 0.21 0.26 16 23 C -0.05 -2.05 6.90 36.66 0.25 -1.80 16 24 N -0.01 -0.27 4.98 -45.79 -0.23 -0.50 16 25 O -0.19 -8.18 19.16 3.51 0.07 -8.11 16 26 O -0.24 -14.54 16.10 10.92 0.18 -14.36 16 27 H 0.23 7.91 7.80 -4.43 -0.03 7.88 16 28 H 0.09 3.51 4.92 -2.38 -0.01 3.50 16 29 H 0.12 5.71 6.16 -2.39 -0.01 5.70 16 30 H 0.29 13.07 8.26 -92.71 -0.77 12.30 16 31 H 0.16 4.82 7.82 -2.91 -0.02 4.80 16 32 H 0.09 0.42 7.66 -2.38 -0.02 0.40 16 33 H 0.09 0.40 7.66 -2.39 -0.02 0.39 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.21 1.31 6.28 -2.91 -0.02 1.29 16 38 H 0.19 3.65 7.58 -2.91 -0.02 3.62 16 Total: -1.00 -84.40 339.16 7.07 -77.33 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.11 Total: 15.37 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.99 Total: -4.52 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.65 Total: -64.23 kcal Atomic # 8 Polarization: -67.29 SS G_CDS: -0.42 Total: -67.71 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -84.40 7.07 -77.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283180128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.186 kcal (2) G-P(sol) polarization free energy of solvation -84.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds