Wall clock time and date at job start Tue Mar 31 2020 11:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47054 * 2 1 4 4 C 1.50703 * 109.47106 * 119.99665 * 2 1 3 5 5 H 1.08001 * 119.99574 * 120.00176 * 4 2 1 6 6 C 1.37878 * 120.00469 * 300.00391 * 4 2 1 7 7 N 1.31515 * 119.99364 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99997 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46653 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47057 * 299.99211 * 8 6 4 11 11 H 1.48491 * 109.47343 * 59.99629 * 8 6 4 12 12 N 1.46499 * 109.47121 * 240.00075 * 2 1 3 13 13 C 1.34769 * 120.00007 * 85.00099 * 12 2 1 14 14 O 1.21595 * 120.00225 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99867 * 180.02562 * 13 12 2 16 16 C 1.40287 * 120.00136 * 174.36395 * 15 13 12 17 17 C 1.38774 * 120.02036 * 335.21387 * 16 15 13 18 18 C 1.38128 * 120.01042 * 179.74196 * 17 16 15 19 19 C 1.38723 * 120.04868 * 0.51250 * 18 17 16 20 20 O 1.35975 * 119.97312 * 179.74127 * 19 18 17 21 21 C 1.42892 * 117.00317 * 0.02562 * 20 19 18 22 22 F 1.39902 * 109.47171 * 299.99640 * 21 20 19 23 23 F 1.39903 * 109.47199 * 59.99640 * 21 20 19 24 24 C 1.38695 * 120.04655 * 359.76457 * 19 18 17 25 25 C 1.38282 * 119.99208 * 359.97438 * 24 19 18 26 26 F 1.35093 * 120.02745 * 179.97438 * 25 24 19 27 27 H 1.08997 * 109.47422 * 59.99681 * 1 2 3 28 28 H 1.08997 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47005 * 300.00161 * 1 2 3 30 30 H 0.97003 * 119.99543 * 179.97438 * 7 6 4 31 31 H 0.97003 * 119.99578 * 264.99920 * 12 2 1 32 32 H 0.97004 * 120.00173 * 354.35587 * 15 13 12 33 33 H 1.08006 * 119.99247 * 0.02562 * 17 16 15 34 34 H 1.07994 * 119.97339 * 180.23465 * 18 17 16 35 35 H 1.09000 * 109.47461 * 180.02562 * 21 20 19 36 36 H 1.08003 * 120.00343 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 1.8269 -0.4199 5.2204 10 1 1.8280 -2.5198 4.0082 11 1 3.8075 -1.1189 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8575 1.1614 -2.4118 15 7 2.5958 -0.6537 -3.4576 16 6 2.6183 0.0123 -4.6921 17 6 1.7531 1.0721 -4.9250 18 6 1.7791 1.7312 -6.1386 19 6 2.6622 1.3278 -7.1294 20 8 2.6828 1.9743 -8.3255 21 6 1.7685 3.0597 -8.4921 22 9 0.4583 2.5934 -8.3394 23 9 2.0292 4.0411 -7.5297 24 6 3.5239 0.2652 -6.9011 25 6 3.5032 -0.3925 -5.6849 26 9 4.3418 -1.4279 -5.4619 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7088 1.1614 3.4844 31 1 2.2490 -1.6318 -1.1525 32 1 2.9035 -1.5717 -3.3962 33 1 1.0626 1.3845 -4.1555 34 1 1.1082 2.5583 -6.3179 35 1 1.8882 3.4861 -9.4880 36 1 4.2115 -0.0480 -7.6728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283375614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:50 Heat of formation + Delta-G solvation = -186.547913 kcal Electronic energy + Delta-G solvation = -26244.743417 eV Core-core repulsion = 21700.785532 eV Total energy + Delta-G solvation = -4543.957885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.61297 -49.00861 -47.60197 -40.45312 -39.51049 -37.41219 -35.07030 -34.15535 -32.45828 -30.83478 -29.65596 -28.23738 -26.17578 -25.28784 -23.63313 -22.66736 -21.28598 -19.98001 -19.41702 -18.88157 -18.17847 -18.14446 -17.59307 -16.71640 -16.26350 -15.96300 -15.75050 -15.22441 -15.04508 -14.77356 -14.73499 -14.32917 -14.15126 -13.96793 -13.90336 -13.77308 -13.38240 -13.30841 -12.78434 -12.45513 -12.17818 -12.05052 -11.75401 -11.49153 -11.13477 -11.00868 -10.80373 -10.37512 -10.26609 -10.13476 -9.49281 -9.10795 -8.97604 -8.60155 -8.14660 -7.69733 -6.16152 -4.25655 0.97747 1.13097 2.22107 2.97105 3.17750 3.23917 3.29377 3.30497 3.32595 3.82760 3.98520 4.14617 4.29200 4.34103 4.62459 4.74688 4.82145 4.96449 5.16647 5.20146 5.51301 5.83370 6.04353 6.21279 6.28525 6.56413 6.73131 6.91651 6.98142 7.02474 7.14315 7.37114 7.57391 7.76031 7.92075 8.10308 8.64452 8.76589 9.10968 9.42076 10.89919 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023147 B = 0.002820 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.395263 B = 9928.174805 C =10776.740299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.714 5.714 13 C 0.694 3.306 14 O -0.579 6.579 15 N -0.689 5.689 16 C 0.139 3.861 17 C -0.070 4.070 18 C -0.172 4.172 19 C 0.098 3.902 20 O -0.320 6.320 21 C 0.412 3.588 22 F -0.198 7.198 23 F -0.196 7.196 24 C -0.147 4.147 25 C 0.086 3.914 26 F -0.132 7.132 27 H 0.015 0.985 28 H 0.027 0.973 29 H 0.092 0.908 30 H 0.266 0.734 31 H 0.388 0.612 32 H 0.407 0.593 33 H 0.169 0.831 34 H 0.140 0.860 35 H 0.181 0.819 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 0.082 -22.509 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.365 5.365 13 C 0.394 3.606 14 O -0.457 6.457 15 N -0.336 5.336 16 C 0.041 3.959 17 C -0.091 4.091 18 C -0.191 4.191 19 C 0.054 3.946 20 O -0.238 6.238 21 C 0.322 3.678 22 F -0.180 7.180 23 F -0.178 7.178 24 C -0.167 4.167 25 C 0.063 3.937 26 F -0.111 7.111 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.220 0.780 32 H 0.242 0.758 33 H 0.186 0.814 34 H 0.158 0.842 35 H 0.198 0.802 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.961 1.206 -22.341 22.459 hybrid contribution 0.557 -1.406 1.106 1.874 sum 2.519 -0.200 -21.235 21.385 Atomic orbital electron populations 1.22110 0.98372 0.99199 1.01012 1.18729 0.90937 0.93809 0.78711 0.93125 1.21164 1.32724 1.13383 0.90227 0.92070 1.24875 0.94763 0.94948 0.99044 1.69891 1.35675 1.22318 1.24109 0.86476 0.79182 0.79553 0.81697 1.21082 1.20145 1.20150 1.45907 1.68003 1.13376 1.09217 1.16123 0.78866 0.85299 0.80270 1.90838 1.56915 1.14036 1.83937 1.42797 1.68300 1.16752 1.05740 1.17584 0.96139 0.96888 0.85291 1.21339 0.97380 0.93554 0.96800 1.21527 1.00947 1.02906 0.93736 1.18321 0.97624 0.94101 0.84590 1.86574 1.57987 1.45138 1.34099 1.23342 0.73719 0.77812 0.92921 1.93110 1.39248 1.88884 1.96752 1.93126 1.93323 1.63127 1.68236 1.19888 1.02611 0.97090 0.97141 1.16834 0.92079 0.90089 0.94655 1.91485 1.69192 1.55428 1.95002 0.96544 0.95427 0.88997 0.92427 0.77970 0.75795 0.81431 0.84212 0.80219 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.28 7.00 2.56 -69.08 -0.18 6.82 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -14.01 8.73 -34.44 -0.30 -14.31 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.57 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.71 -14.59 5.07 -59.81 -0.30 -14.89 16 13 C 0.69 13.83 8.33 -86.92 -0.72 13.11 16 14 O -0.58 -13.47 13.17 5.28 0.07 -13.40 16 15 N -0.69 -10.83 5.33 -14.13 -0.08 -10.90 16 16 C 0.14 2.13 6.44 -83.50 -0.54 1.60 16 17 C -0.07 -1.10 8.72 -39.42 -0.34 -1.45 16 18 C -0.17 -2.33 8.25 -39.44 -0.33 -2.65 16 19 C 0.10 1.19 6.48 -39.23 -0.25 0.94 16 20 O -0.32 -3.16 10.43 -19.66 -0.21 -3.37 16 21 C 0.41 3.04 5.98 101.05 0.60 3.65 16 22 F -0.20 -1.83 15.58 2.25 0.04 -1.79 16 23 F -0.20 -1.93 15.58 2.25 0.04 -1.89 16 24 C -0.15 -1.75 9.96 -39.40 -0.39 -2.14 16 25 C 0.09 1.15 7.30 -39.28 -0.29 0.87 16 26 F -0.13 -1.71 16.81 2.25 0.04 -1.67 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.44 6.07 -51.92 -0.32 2.12 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 6.76 8.56 -40.82 -0.35 6.41 16 32 H 0.41 5.20 8.47 -40.82 -0.35 4.86 16 33 H 0.17 3.00 5.78 -52.48 -0.30 2.70 16 34 H 0.14 1.78 5.08 -52.49 -0.27 1.51 16 35 H 0.18 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -31.15 321.53 -5.65 -36.80 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -3.21 Total: 9.96 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -2.49 Total: 4.84 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.25 Total: -49.74 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.14 Total: -16.77 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.11 Total: -5.36 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.15 -5.65 -36.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283375614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.748 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds