Wall clock time and date at job start Tue Mar 31 2020 11:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47054 * 2 1 4 4 C 1.50703 * 109.47106 * 119.99665 * 2 1 3 5 5 H 1.08001 * 119.99574 * 120.00176 * 4 2 1 6 6 C 1.37878 * 120.00469 * 300.00391 * 4 2 1 7 7 N 1.31515 * 119.99364 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99997 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46653 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47057 * 299.99211 * 8 6 4 11 11 H 1.48491 * 109.47343 * 59.99629 * 8 6 4 12 12 N 1.46499 * 109.47121 * 240.00075 * 2 1 3 13 13 C 1.34769 * 120.00007 * 85.00099 * 12 2 1 14 14 O 1.21595 * 120.00225 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99867 * 180.02562 * 13 12 2 16 16 C 1.40287 * 120.00136 * 174.36395 * 15 13 12 17 17 C 1.38774 * 120.02036 * 335.21387 * 16 15 13 18 18 C 1.38128 * 120.01042 * 179.74196 * 17 16 15 19 19 C 1.38723 * 120.04868 * 0.51250 * 18 17 16 20 20 O 1.35975 * 119.97312 * 179.74127 * 19 18 17 21 21 C 1.42892 * 117.00317 * 0.02562 * 20 19 18 22 22 F 1.39902 * 109.47171 * 299.99640 * 21 20 19 23 23 F 1.39903 * 109.47199 * 59.99640 * 21 20 19 24 24 C 1.38695 * 120.04655 * 359.76457 * 19 18 17 25 25 C 1.38282 * 119.99208 * 359.97438 * 24 19 18 26 26 F 1.35093 * 120.02745 * 179.97438 * 25 24 19 27 27 H 1.08997 * 109.47422 * 59.99681 * 1 2 3 28 28 H 1.08997 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47005 * 300.00161 * 1 2 3 30 30 H 0.97003 * 119.99543 * 179.97438 * 7 6 4 31 31 H 0.97003 * 119.99578 * 264.99920 * 12 2 1 32 32 H 0.97004 * 120.00173 * 354.35587 * 15 13 12 33 33 H 1.08006 * 119.99247 * 0.02562 * 17 16 15 34 34 H 1.07994 * 119.97339 * 180.23465 * 18 17 16 35 35 H 1.09000 * 109.47461 * 180.02562 * 21 20 19 36 36 H 1.08003 * 120.00343 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 1.8269 -0.4199 5.2204 10 1 1.8280 -2.5198 4.0082 11 1 3.8075 -1.1189 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8575 1.1614 -2.4118 15 7 2.5958 -0.6537 -3.4576 16 6 2.6183 0.0123 -4.6921 17 6 1.7531 1.0721 -4.9250 18 6 1.7791 1.7312 -6.1386 19 6 2.6622 1.3278 -7.1294 20 8 2.6828 1.9743 -8.3255 21 6 1.7685 3.0597 -8.4921 22 9 0.4583 2.5934 -8.3394 23 9 2.0292 4.0411 -7.5297 24 6 3.5239 0.2652 -6.9011 25 6 3.5032 -0.3925 -5.6849 26 9 4.3418 -1.4279 -5.4619 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7088 1.1614 3.4844 31 1 2.2490 -1.6318 -1.1525 32 1 2.9035 -1.5717 -3.3962 33 1 1.0626 1.3845 -4.1555 34 1 1.1082 2.5583 -6.3179 35 1 1.8882 3.4861 -9.4880 36 1 4.2115 -0.0480 -7.6728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283375614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:49 Heat of formation + Delta-G solvation = -207.838798 kcal Electronic energy + Delta-G solvation = -26245.666659 eV Core-core repulsion = 21700.785532 eV Total energy + Delta-G solvation = -4544.881127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.28548 -50.06371 -48.28942 -41.74895 -40.67505 -38.55716 -36.81948 -35.59177 -34.33804 -31.92852 -31.22280 -29.63740 -27.34892 -26.93645 -24.82731 -23.83368 -22.82064 -21.67818 -20.34311 -20.06375 -19.43520 -18.85603 -18.67274 -17.99087 -17.63781 -17.19358 -16.91980 -16.88807 -16.27528 -16.09100 -15.98084 -15.53810 -15.21236 -14.98999 -14.90026 -14.75226 -14.61333 -14.42186 -14.24497 -13.87811 -13.65195 -13.30519 -13.00914 -12.92852 -12.84834 -12.73015 -12.48226 -12.27329 -12.15075 -11.44830 -11.12878 -11.07612 -10.60190 -10.06685 -9.89331 -8.91934 -8.18409 -6.35785 -0.10952 0.04427 1.44008 1.47276 1.48294 1.54733 1.61638 1.98894 2.41259 2.48408 2.58561 3.05914 3.12251 3.29343 3.48677 3.68547 3.71266 3.75511 3.98229 4.13010 4.38276 4.72752 4.83325 4.91062 4.93178 5.05810 5.07673 5.17115 5.36763 5.46956 5.56975 5.61320 5.80116 5.88519 6.07363 6.14418 6.70980 7.10881 7.32022 7.56254 8.87924 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023147 B = 0.002820 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.395263 B = 9928.174805 C =10776.740299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.288 3.712 3 H 0.002 0.998 4 C -0.550 4.550 5 H 0.074 0.926 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.286 1.286 10 H -0.264 1.264 11 H -0.271 1.271 12 N -0.710 5.710 13 C 0.695 3.305 14 O -0.617 6.617 15 N -0.672 5.672 16 C 0.113 3.887 17 C -0.087 4.087 18 C -0.176 4.176 19 C 0.108 3.892 20 O -0.316 6.316 21 C 0.404 3.596 22 F -0.210 7.210 23 F -0.212 7.212 24 C -0.138 4.138 25 C 0.096 3.904 26 F -0.127 7.127 27 H 0.014 0.986 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.266 0.734 31 H 0.404 0.596 32 H 0.422 0.578 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.243 0.757 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 -1.260 -24.382 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.020 0.980 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.212 1.212 10 H -0.188 1.188 11 H -0.197 1.197 12 N -0.363 5.363 13 C 0.395 3.605 14 O -0.498 6.498 15 N -0.321 5.321 16 C 0.015 3.985 17 C -0.108 4.108 18 C -0.196 4.196 19 C 0.063 3.937 20 O -0.233 6.233 21 C 0.315 3.685 22 F -0.192 7.192 23 F -0.194 7.194 24 C -0.158 4.158 25 C 0.074 3.926 26 F -0.106 7.106 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.240 0.760 32 H 0.260 0.740 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.259 0.741 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.281 -0.186 -24.276 24.497 hybrid contribution 0.156 -0.906 1.503 1.762 sum 3.437 -1.092 -22.773 23.056 Atomic orbital electron populations 1.21926 0.98152 0.99540 0.99733 1.18300 0.91048 0.91758 0.80403 0.97974 1.21506 1.32846 1.13748 0.90682 0.90778 1.25780 0.94832 0.95571 1.02252 1.70043 1.36824 1.23798 1.24765 0.85380 0.78598 0.78706 0.77544 1.21164 1.18846 1.19656 1.45492 1.68368 1.13995 1.08403 1.16168 0.78606 0.84822 0.80863 1.90826 1.58379 1.15899 1.84676 1.42416 1.67567 1.17241 1.04868 1.17710 0.97586 0.97703 0.85466 1.21104 0.97799 0.94694 0.97181 1.21552 1.01619 1.02906 0.93473 1.18385 0.96463 0.93837 0.84976 1.86609 1.58656 1.45608 1.32434 1.24432 0.72575 0.76740 0.94761 1.93088 1.40221 1.89016 1.96876 1.93098 1.93358 1.63646 1.69330 1.20203 1.02398 0.96152 0.97011 1.16809 0.91359 0.89979 0.94497 1.91503 1.68879 1.55167 1.95022 0.96736 0.94075 0.91295 0.92460 0.76040 0.74013 0.84362 0.83916 0.74135 0.80344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.29 14.86 2.56 44.25 0.11 14.98 16 3 H 0.00 0.14 7.58 -2.39 -0.02 0.12 16 4 C -0.55 -28.83 8.73 25.60 0.22 -28.60 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -52.20 11.32 21.45 0.24 -51.96 16 8 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 9 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 N -0.71 -29.43 5.07 -461.41 -2.34 -31.77 16 13 C 0.69 28.46 8.33 179.06 1.49 29.95 16 14 O -0.62 -30.23 13.17 -4.01 -0.05 -30.28 16 15 N -0.67 -21.14 5.33 -316.86 -1.69 -22.83 16 16 C 0.11 3.43 6.44 38.10 0.25 3.68 16 17 C -0.09 -2.82 8.72 22.37 0.19 -2.63 16 18 C -0.18 -4.74 8.25 22.36 0.18 -4.55 16 19 C 0.11 2.42 6.48 22.50 0.15 2.57 16 20 O -0.32 -5.28 10.43 -93.27 -0.97 -6.25 16 21 C 0.40 4.86 5.98 113.37 0.68 5.54 16 22 F -0.21 -3.52 15.58 44.97 0.70 -2.82 16 23 F -0.21 -3.85 15.58 44.97 0.70 -3.15 16 24 C -0.14 -2.89 9.96 22.39 0.22 -2.67 16 25 C 0.10 2.40 7.30 22.47 0.16 2.56 16 26 F -0.13 -2.98 16.81 44.97 0.76 -2.23 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 3.79 6.07 -2.38 -0.01 3.78 16 30 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.40 13.88 8.56 -92.71 -0.79 13.08 16 32 H 0.42 10.39 8.47 -92.71 -0.78 9.60 16 33 H 0.14 5.34 5.78 -2.91 -0.02 5.32 16 34 H 0.14 3.66 5.08 -2.91 -0.01 3.65 16 35 H 0.24 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -69.74 321.53 3.75 -65.99 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.40 Total: 25.58 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 4.78 Total: 16.02 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -3.79 Total: -106.55 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.03 Total: -36.53 kcal Atomic # 9 Polarization: -10.36 SS G_CDS: 2.16 Total: -8.20 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -69.74 3.75 -65.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283375614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.851 kcal (2) G-P(sol) polarization free energy of solvation -69.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds