Wall clock time and date at job start Tue Mar 31 2020 11:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00045 * 2 1 4 4 C 1.50696 * 109.47081 * 270.00300 * 3 2 1 5 5 H 1.07996 * 120.00316 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99696 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00090 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00072 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47336 * 89.99659 * 8 6 4 10 10 H 1.48495 * 109.47253 * 209.99851 * 8 6 4 11 11 H 1.48505 * 109.46754 * 329.99741 * 8 6 4 12 12 C 1.34780 * 119.99710 * 180.02562 * 2 1 3 13 13 O 1.21592 * 119.99382 * 179.97438 * 12 2 1 14 14 N 1.34770 * 120.00015 * 0.27325 * 12 2 1 15 15 C 1.40282 * 119.99929 * 174.05203 * 14 12 2 16 16 C 1.38777 * 120.02373 * 335.21793 * 15 14 12 17 17 C 1.38129 * 120.00968 * 179.76924 * 16 15 14 18 18 C 1.38718 * 120.05551 * 0.50092 * 17 16 15 19 19 O 1.35974 * 119.98061 * 179.72424 * 18 17 16 20 20 C 1.42898 * 116.99749 * 0.02759 * 19 18 17 21 21 F 1.39896 * 109.47056 * 299.99851 * 20 19 18 22 22 F 1.39905 * 109.47186 * 59.99761 * 20 19 18 23 23 C 1.38696 * 120.04378 * 359.75276 * 18 17 16 24 24 C 1.38287 * 119.98886 * 359.97438 * 23 18 17 25 25 F 1.35106 * 120.02642 * 179.97438 * 24 23 18 26 26 H 1.09001 * 109.47018 * 269.99902 * 1 2 3 27 27 H 1.09002 * 109.47036 * 29.99891 * 1 2 3 28 28 H 1.08998 * 109.47319 * 149.99579 * 1 2 3 29 29 H 1.09007 * 109.46800 * 30.00193 * 3 2 1 30 30 H 1.08995 * 109.47062 * 149.99641 * 3 2 1 31 31 H 0.96999 * 120.00190 * 180.02562 * 7 6 4 32 32 H 0.96995 * 120.00316 * 354.05826 * 14 12 2 33 33 H 1.07998 * 119.99065 * 0.02562 * 16 15 14 34 34 H 1.07998 * 119.97082 * 180.25722 * 17 16 15 35 35 H 1.09005 * 109.47312 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.00712 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5543 3.6176 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.3078 4.2608 -3.8996 10 1 4.6982 4.1995 -3.4967 11 1 3.5538 2.2203 -4.3051 12 6 2.1389 -1.1673 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0066 15 6 2.1612 -3.5456 -0.1331 16 6 3.4052 -3.5707 -0.7478 17 6 4.0926 -4.7627 -0.8679 18 6 3.5360 -5.9375 -0.3837 19 8 4.2115 -7.1110 -0.5077 20 6 5.4888 -7.0598 -1.1465 21 9 5.3395 -6.5725 -2.4493 22 9 6.3370 -6.2121 -0.4258 23 6 2.2906 -5.9160 0.2264 24 6 1.6033 -4.7226 0.3526 25 9 0.3898 -4.7009 0.9463 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5139 31 1 4.0311 4.4435 -0.8502 32 1 0.4986 -2.3369 0.0763 33 1 3.8376 -2.6572 -1.1286 34 1 5.0624 -4.7808 -1.3427 35 1 5.9188 -8.0609 -1.1797 36 1 1.8580 -6.8309 0.6035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283404567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:02 Heat of formation + Delta-G solvation = -173.860764 kcal Electronic energy + Delta-G solvation = -26531.379672 eV Core-core repulsion = 21987.971944 eV Total energy + Delta-G solvation = -4543.407729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.57306 -48.98813 -47.56267 -40.45723 -39.53659 -37.39518 -35.01805 -34.27593 -32.56451 -30.79002 -29.27209 -27.71462 -26.36375 -25.66510 -23.68555 -23.00781 -22.02747 -19.68431 -19.34585 -18.77673 -18.13563 -17.83021 -17.04850 -16.73464 -16.49649 -16.13082 -15.77768 -15.20412 -14.99093 -14.83870 -14.69814 -14.26866 -14.11354 -13.91066 -13.86387 -13.77257 -13.26353 -13.19170 -13.02373 -12.66135 -12.22919 -12.11265 -11.95787 -11.83993 -11.43218 -11.23353 -10.94146 -10.61302 -10.20367 -10.09789 -9.70070 -9.35811 -8.92760 -8.46525 -7.95671 -7.59575 -6.07389 -4.12502 1.01584 1.17255 2.25560 2.98622 3.21639 3.28638 3.35293 3.36371 3.40528 3.85879 4.01985 4.17569 4.32190 4.37808 4.46204 4.69069 4.80533 4.97978 5.23222 5.26886 5.42257 5.53849 5.79633 5.86560 6.06522 6.11034 6.25774 6.35723 6.60597 6.68226 7.03049 7.27826 7.41783 7.56717 7.89488 8.18356 8.44687 8.87250 9.09868 9.52857 11.00538 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.003566 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.306562 B = 7849.989835 C = 9239.671120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.608 5.608 3 C 0.259 3.741 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.698 3.302 13 O -0.565 6.565 14 N -0.689 5.689 15 C 0.139 3.861 16 C -0.069 4.069 17 C -0.171 4.171 18 C 0.097 3.903 19 O -0.320 6.320 20 C 0.412 3.588 21 F -0.198 7.198 22 F -0.196 7.196 23 C -0.148 4.148 24 C 0.085 3.915 25 F -0.134 7.134 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.170 0.830 34 H 0.140 0.860 35 H 0.181 0.819 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -21.879 0.761 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.140 3.860 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.400 3.600 13 O -0.442 6.442 14 N -0.338 5.338 15 C 0.041 3.959 16 C -0.090 4.090 17 C -0.190 4.190 18 C 0.053 3.947 19 O -0.238 6.238 20 C 0.322 3.678 21 F -0.180 7.180 22 F -0.178 7.178 23 C -0.167 4.167 24 C 0.062 3.938 25 F -0.112 7.112 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.243 0.757 33 H 0.187 0.813 34 H 0.158 0.842 35 H 0.198 0.802 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.744 -21.663 0.872 21.750 hybrid contribution -0.428 0.615 -0.923 1.189 sum -2.172 -21.047 -0.050 21.159 Atomic orbital electron populations 1.21643 0.81437 1.02654 1.00629 1.47534 1.05907 1.06226 1.74620 1.19298 0.92430 0.76657 0.97639 1.21438 1.36703 1.06375 0.92271 0.92411 1.24927 0.95264 0.96341 0.97477 1.69930 1.38276 1.14326 1.30756 0.86485 0.77699 0.78600 0.84565 1.20639 1.21048 1.19895 1.15890 0.85519 0.79941 0.78631 1.90853 1.11254 1.85354 1.56723 1.42912 1.10362 1.03479 1.76997 1.17597 0.94674 0.84221 0.99458 1.21394 0.92649 0.99460 0.95469 1.21536 1.01999 0.91545 1.03946 1.18321 0.92327 0.84126 0.99897 1.86570 1.30771 1.31220 1.75261 1.23336 0.78649 0.93100 0.72708 1.93112 1.95243 1.90440 1.39156 1.93127 1.71433 1.75120 1.78140 1.19868 0.93869 0.97671 1.05332 1.16825 0.83340 0.92966 1.00670 1.91478 1.40988 1.97152 1.81610 0.93433 0.90015 0.93017 0.94624 0.93530 0.92643 0.75708 0.81261 0.84193 0.80247 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.16 59.85 0.61 1.85 16 2 N -0.61 -12.78 2.86 -188.74 -0.54 -13.32 16 3 C 0.26 6.66 5.16 -5.20 -0.03 6.63 16 4 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.75 5.46 -17.81 -0.10 1.66 16 7 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.70 14.73 8.08 -86.92 -0.70 14.03 16 13 O -0.57 -13.98 13.09 5.28 0.07 -13.91 16 14 N -0.69 -11.48 5.15 -14.13 -0.07 -11.55 16 15 C 0.14 2.23 6.44 -83.50 -0.54 1.69 16 16 C -0.07 -1.16 8.72 -39.42 -0.34 -1.50 16 17 C -0.17 -2.45 8.25 -39.44 -0.33 -2.78 16 18 C 0.10 1.24 6.48 -39.23 -0.25 0.98 16 19 O -0.32 -3.31 10.43 -19.66 -0.21 -3.51 16 20 C 0.41 3.26 5.98 101.05 0.60 3.86 16 21 F -0.20 -1.96 15.58 2.25 0.04 -1.93 16 22 F -0.20 -2.03 15.58 2.25 0.04 -2.00 16 23 C -0.15 -1.80 9.96 -39.39 -0.39 -2.19 16 24 C 0.08 1.17 7.30 -39.28 -0.29 0.88 16 25 F -0.13 -1.74 16.81 2.25 0.04 -1.70 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.05 0.65 6.45 -51.93 -0.33 0.31 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.41 5.58 6.26 -40.82 -0.26 5.32 16 33 H 0.17 3.30 5.78 -52.49 -0.30 3.00 16 34 H 0.14 1.90 5.08 -52.49 -0.27 1.64 16 35 H 0.18 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 322.61 15.07 4.86 4.86 Total: -1.00 -33.35 322.61 -5.34 -38.69 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.20 Total: 3.24 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -2.08 Total: 10.02 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.12 Total: -50.39 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.14 Total: -17.42 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.11 Total: -5.63 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.35 -5.34 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283404567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.175 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds