Wall clock time and date at job start Tue Mar 31 2020 11:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00045 * 2 1 4 4 C 1.50696 * 109.47081 * 270.00300 * 3 2 1 5 5 H 1.07996 * 120.00316 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99696 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00090 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00072 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47336 * 89.99659 * 8 6 4 10 10 H 1.48495 * 109.47253 * 209.99851 * 8 6 4 11 11 H 1.48505 * 109.46754 * 329.99741 * 8 6 4 12 12 C 1.34780 * 119.99710 * 180.02562 * 2 1 3 13 13 O 1.21592 * 119.99382 * 179.97438 * 12 2 1 14 14 N 1.34770 * 120.00015 * 0.27325 * 12 2 1 15 15 C 1.40282 * 119.99929 * 174.05203 * 14 12 2 16 16 C 1.38777 * 120.02373 * 335.21793 * 15 14 12 17 17 C 1.38129 * 120.00968 * 179.76924 * 16 15 14 18 18 C 1.38718 * 120.05551 * 0.50092 * 17 16 15 19 19 O 1.35974 * 119.98061 * 179.72424 * 18 17 16 20 20 C 1.42898 * 116.99749 * 0.02759 * 19 18 17 21 21 F 1.39896 * 109.47056 * 299.99851 * 20 19 18 22 22 F 1.39905 * 109.47186 * 59.99761 * 20 19 18 23 23 C 1.38696 * 120.04378 * 359.75276 * 18 17 16 24 24 C 1.38287 * 119.98886 * 359.97438 * 23 18 17 25 25 F 1.35106 * 120.02642 * 179.97438 * 24 23 18 26 26 H 1.09001 * 109.47018 * 269.99902 * 1 2 3 27 27 H 1.09002 * 109.47036 * 29.99891 * 1 2 3 28 28 H 1.08998 * 109.47319 * 149.99579 * 1 2 3 29 29 H 1.09007 * 109.46800 * 30.00193 * 3 2 1 30 30 H 1.08995 * 109.47062 * 149.99641 * 3 2 1 31 31 H 0.96999 * 120.00190 * 180.02562 * 7 6 4 32 32 H 0.96995 * 120.00316 * 354.05826 * 14 12 2 33 33 H 1.07998 * 119.99065 * 0.02562 * 16 15 14 34 34 H 1.07998 * 119.97082 * 180.25722 * 17 16 15 35 35 H 1.09005 * 109.47312 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.00712 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5543 3.6176 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.3078 4.2608 -3.8996 10 1 4.6982 4.1995 -3.4967 11 1 3.5538 2.2203 -4.3051 12 6 2.1389 -1.1673 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0066 15 6 2.1612 -3.5456 -0.1331 16 6 3.4052 -3.5707 -0.7478 17 6 4.0926 -4.7627 -0.8679 18 6 3.5360 -5.9375 -0.3837 19 8 4.2115 -7.1110 -0.5077 20 6 5.4888 -7.0598 -1.1465 21 9 5.3395 -6.5725 -2.4493 22 9 6.3370 -6.2121 -0.4258 23 6 2.2906 -5.9160 0.2264 24 6 1.6033 -4.7226 0.3526 25 9 0.3898 -4.7009 0.9463 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5139 31 1 4.0311 4.4435 -0.8502 32 1 0.4986 -2.3369 0.0763 33 1 3.8376 -2.6572 -1.1286 34 1 5.0624 -4.7808 -1.3427 35 1 5.9188 -8.0609 -1.1797 36 1 1.8580 -6.8309 0.6035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283404567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:01 Heat of formation + Delta-G solvation = -196.115496 kcal Electronic energy + Delta-G solvation = -26532.344710 eV Core-core repulsion = 21987.971944 eV Total energy + Delta-G solvation = -4544.372767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.29138 -50.06422 -48.29712 -41.81583 -40.70896 -38.54736 -36.71296 -35.73211 -34.59707 -31.91288 -30.62537 -29.41193 -27.51995 -26.88352 -25.25397 -24.39346 -23.27727 -21.16632 -20.28776 -19.90999 -18.89479 -18.85764 -18.68813 -18.45316 -17.72193 -17.19820 -16.90209 -16.85961 -16.43075 -16.10771 -15.97655 -15.54300 -15.09322 -14.91360 -14.88614 -14.79495 -14.62176 -14.49102 -14.25303 -13.96989 -13.72366 -13.50186 -13.26390 -13.11637 -12.92479 -12.82844 -12.53445 -12.48548 -12.20290 -11.75341 -11.42017 -11.00426 -10.63913 -10.06866 -9.59744 -8.91784 -8.22367 -6.37249 -0.11589 0.03763 1.36775 1.39642 1.45063 1.49978 1.57773 1.98802 2.37087 2.48680 2.58360 2.92061 3.05136 3.07676 3.47426 3.67106 3.70555 3.74812 3.96754 4.11100 4.22326 4.37775 4.60338 4.75340 4.86036 4.91549 4.95048 5.06823 5.14776 5.22303 5.46790 5.51429 5.72418 5.88054 5.94909 6.04338 6.70954 6.90934 7.28827 7.49924 8.84283 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.003566 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.306562 B = 7849.989835 C = 9239.671120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.616 5.616 3 C 0.275 3.725 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.694 3.306 13 O -0.612 6.612 14 N -0.672 5.672 15 C 0.112 3.888 16 C -0.089 4.089 17 C -0.176 4.176 18 C 0.109 3.891 19 O -0.314 6.314 20 C 0.403 3.597 21 F -0.211 7.211 22 F -0.213 7.213 23 C -0.136 4.136 24 C 0.098 3.902 25 F -0.125 7.125 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.002 0.998 31 H 0.268 0.732 32 H 0.421 0.579 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.244 0.756 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 -24.444 0.204 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.351 5.351 3 C 0.154 3.846 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.396 3.604 13 O -0.492 6.492 14 N -0.322 5.322 15 C 0.015 3.985 16 C -0.110 4.110 17 C -0.195 4.195 18 C 0.064 3.936 19 O -0.232 6.232 20 C 0.315 3.685 21 F -0.193 7.193 22 F -0.195 7.195 23 C -0.155 4.155 24 C 0.076 3.924 25 F -0.104 7.104 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.021 0.979 31 H 0.077 0.923 32 H 0.261 0.739 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.259 0.741 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.010 -24.277 0.318 24.465 hybrid contribution -0.022 1.260 -0.715 1.449 sum -3.032 -23.017 -0.397 23.219 Atomic orbital electron populations 1.21939 0.77851 1.04084 1.02846 1.47396 1.08069 1.04800 1.74792 1.18754 0.91027 0.78667 0.96163 1.21696 1.36983 1.06584 0.93007 0.92955 1.25811 0.94829 0.96374 1.01844 1.70043 1.38853 1.14792 1.32956 0.85427 0.78106 0.78145 0.79184 1.18780 1.20612 1.19996 1.16031 0.85080 0.80933 0.78332 1.90827 1.13513 1.86247 1.58620 1.42523 1.10853 1.02413 1.76418 1.17721 0.94993 0.84588 1.01246 1.21093 0.93700 0.99079 0.97117 1.21530 1.02033 0.91591 1.04377 1.18373 0.92518 0.84311 0.98401 1.86607 1.31718 1.29588 1.75264 1.24446 0.77499 0.95132 0.71451 1.93088 1.95218 1.90849 1.40127 1.93098 1.71798 1.76055 1.78524 1.20207 0.93233 0.98191 1.03889 1.16761 0.83433 0.92449 0.99788 1.91503 1.40455 1.97106 1.81336 0.90745 0.90349 0.89851 0.95038 0.97945 0.92337 0.73947 0.84903 0.84109 0.74058 0.80082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.23 10.16 127.77 1.30 3.52 16 2 N -0.62 -26.54 2.86 -869.30 -2.48 -29.02 16 3 C 0.28 14.82 5.16 85.63 0.44 15.26 16 4 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.61 5.46 84.66 0.46 1.07 16 7 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 8 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.69 30.36 8.08 179.06 1.45 31.81 16 13 O -0.61 -32.29 13.09 -4.01 -0.05 -32.34 16 14 N -0.67 -22.38 5.15 -316.87 -1.63 -24.02 16 15 C 0.11 3.58 6.44 38.10 0.25 3.83 16 16 C -0.09 -3.11 8.72 22.37 0.19 -2.92 16 17 C -0.18 -5.06 8.25 22.36 0.18 -4.87 16 18 C 0.11 2.54 6.48 22.49 0.15 2.69 16 19 O -0.31 -5.49 10.43 -93.26 -0.97 -6.47 16 20 C 0.40 5.28 5.98 113.37 0.68 5.96 16 21 F -0.21 -3.85 15.58 44.97 0.70 -3.15 16 22 F -0.21 -4.12 15.58 44.97 0.70 -3.42 16 23 C -0.14 -2.90 9.96 22.39 0.22 -2.67 16 24 C 0.10 2.50 7.30 22.47 0.16 2.67 16 25 F -0.13 -2.91 16.81 44.97 0.76 -2.15 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 28 H 0.08 1.92 6.45 -2.39 -0.02 1.91 16 29 H 0.03 1.70 8.07 -2.38 -0.02 1.68 16 30 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 31 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.42 10.96 6.26 -92.71 -0.58 10.38 16 33 H 0.13 5.67 5.78 -2.91 -0.02 5.65 16 34 H 0.14 3.92 5.08 -2.91 -0.01 3.90 16 35 H 0.24 0.06 8.14 -2.38 -0.02 0.04 16 36 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -76.47 322.61 5.63 -70.84 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.58 Total: 12.99 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 5.73 Total: 25.28 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.83 Total: -108.55 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.03 Total: -38.81 kcal Atomic # 9 Polarization: -10.87 SS G_CDS: 2.16 Total: -8.72 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -76.47 5.63 -70.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283404567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.277 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds