Wall clock time and date at job start Tue Mar 31 2020 12:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00000 * 2 1 4 4 H 1.48504 * 109.46679 * 269.99697 * 3 2 1 5 5 H 1.48501 * 109.47141 * 29.99455 * 3 2 1 6 6 H 1.48497 * 109.46977 * 149.99911 * 3 2 1 7 7 C 1.37881 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46904 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47078 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00055 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99961 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00093 * 179.97438 * 12 11 10 15 15 N 1.40098 * 119.99675 * 0.02562 * 14 12 11 16 16 C 1.39000 * 119.99704 * 179.97438 * 15 14 12 17 17 C 1.39144 * 119.70836 * 180.02562 * 16 15 14 18 18 C 1.38297 * 119.09999 * 180.28084 * 17 16 15 19 19 C 1.50700 * 120.74855 * 179.72469 * 18 17 16 20 20 F 1.39898 * 109.46947 * 89.99447 * 19 18 17 21 21 F 1.39896 * 109.46812 * 209.99847 * 19 18 17 22 22 F 1.39893 * 109.46971 * 329.99451 * 19 18 17 23 23 C 1.38885 * 118.50221 * 359.45525 * 18 17 16 24 24 C 1.38026 * 119.33188 * 0.52537 * 23 18 17 25 25 N 1.31974 * 120.85509 * 359.74281 * 24 23 18 26 26 H 0.96994 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47240 * 60.00016 * 9 7 2 28 28 H 1.08997 * 109.46783 * 299.99113 * 9 7 2 29 29 H 1.09005 * 109.47415 * 59.99718 * 10 9 7 30 30 H 1.09002 * 109.46914 * 299.99801 * 10 9 7 31 31 H 0.96998 * 120.00439 * 0.02562 * 11 10 9 32 32 H 0.96994 * 119.99902 * 179.97438 * 14 12 11 33 33 H 0.96994 * 120.00423 * 359.97438 * 15 14 12 34 34 H 1.08002 * 120.44640 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.33312 * 180.27025 * 23 18 17 36 36 H 1.07995 * 119.57373 * 179.76617 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0007 13 8 3.4025 -6.0980 0.0003 14 7 1.5127 -7.2652 0.0018 15 7 0.1118 -7.2652 0.0028 16 6 -0.5832 -8.4689 0.0034 17 6 -1.9747 -8.4619 0.0039 18 6 -2.6534 -9.6668 0.0104 19 6 -4.1600 -9.7025 0.0174 20 9 -4.6321 -9.7171 -1.2994 21 9 -4.5960 -10.8536 0.6821 22 9 -4.6501 -8.5698 0.6760 23 6 -1.9153 -10.8433 0.0046 24 6 -0.5366 -10.7765 0.0037 25 7 0.0846 -9.6122 0.0031 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8720 -3.6044 0.8905 30 1 2.8718 -3.6043 -0.8895 31 1 0.5428 -4.9309 0.0011 32 1 1.9977 -8.1052 0.0012 33 1 -0.3732 -6.4252 0.0031 34 1 -2.5172 -7.5280 0.0042 35 1 -2.4150 -11.8007 0.0051 36 1 0.0412 -11.6889 0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296731708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:11 Heat of formation + Delta-G solvation = -124.605745 kcal Electronic energy + Delta-G solvation = -25322.007467 eV Core-core repulsion = 20813.028347 eV Total energy + Delta-G solvation = -4508.979120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.23017 -48.73845 -48.70377 -41.71943 -40.96118 -37.63905 -36.69802 -34.83102 -34.33496 -33.39010 -31.33979 -29.68436 -27.73459 -26.74790 -24.68958 -23.45592 -23.22014 -22.07540 -20.29489 -20.17962 -19.55804 -19.42007 -18.52920 -18.32048 -17.13021 -16.98744 -16.92287 -16.70257 -16.46628 -16.03318 -15.77818 -15.53404 -15.48299 -15.25523 -15.15497 -15.05514 -15.01691 -14.84022 -14.79083 -14.28699 -13.41540 -13.22729 -13.17815 -13.11649 -12.91124 -12.53353 -12.26041 -11.84933 -11.57289 -11.33297 -11.31821 -10.80345 -10.69926 -10.59166 -10.10503 -8.64302 -8.23692 -6.33277 -0.24582 0.10598 0.74809 1.43052 1.43376 1.53208 1.54659 1.91088 1.93272 2.42528 2.56323 2.58128 2.92717 3.09869 3.11822 3.32788 3.79763 3.82795 3.93966 4.28713 4.46055 4.48522 4.51207 4.60739 4.85828 4.92843 5.10567 5.19291 5.44008 5.48983 5.59133 5.77271 5.88978 6.13992 6.18319 6.73546 6.80122 7.10727 7.35036 7.37085 8.88048 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.002467 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.502827 B =11346.188154 C =12882.582053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.157 3.843 11 N -0.728 5.728 12 C 0.709 3.291 13 O -0.618 6.618 14 N -0.517 5.517 15 N -0.518 5.518 16 C 0.399 3.601 17 C -0.186 4.186 18 C -0.096 4.096 19 C 0.515 3.485 20 F -0.176 7.176 21 F -0.171 7.171 22 F -0.177 7.177 23 C -0.180 4.180 24 C 0.161 3.839 25 N -0.544 5.544 26 H 0.265 0.735 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.402 0.598 32 H 0.443 0.557 33 H 0.440 0.560 34 H 0.161 0.839 35 H 0.172 0.828 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 -25.171 0.024 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.033 3.967 11 N -0.384 5.384 12 C 0.408 3.592 13 O -0.496 6.496 14 N -0.271 5.271 15 N -0.252 5.252 16 C 0.163 3.837 17 C -0.212 4.212 18 C -0.106 4.106 19 C 0.461 3.539 20 F -0.157 7.157 21 F -0.152 7.152 22 F -0.158 7.158 23 C -0.203 4.203 24 C 0.004 3.996 25 N -0.262 5.262 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.238 0.762 32 H 0.290 0.710 33 H 0.286 0.714 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.202 -24.800 0.029 26.121 hybrid contribution -1.376 1.083 -0.014 1.751 sum -9.578 -23.716 0.015 25.578 Atomic orbital electron populations 1.70040 1.07446 1.27962 1.51034 1.25826 0.95772 1.02954 0.94482 0.85480 0.78670 0.78650 0.78463 1.19862 1.20655 1.19093 1.21454 0.93662 0.91832 1.51445 0.92203 1.19143 0.94251 0.91515 0.96563 1.21202 0.94742 0.80491 1.00258 1.45219 1.10093 1.04656 1.78478 1.15790 0.84637 0.80367 0.78386 1.90975 1.12359 1.85269 1.60983 1.44204 0.94246 1.08191 1.80490 1.43192 0.93626 1.06411 1.81947 1.18044 0.87356 0.85583 0.92705 1.20984 0.92264 0.99814 1.08176 1.20093 0.91121 0.95999 1.03376 1.18115 0.88193 0.73768 0.73848 1.93247 1.90092 1.96147 1.36241 1.93213 1.91142 1.50081 1.80780 1.93222 1.89608 1.51843 1.81170 1.21994 0.95552 0.98628 1.04110 1.23069 0.91698 0.94872 0.90001 1.67129 1.41557 0.98245 1.19260 0.92574 0.97082 0.97058 0.93212 0.93188 0.76237 0.71044 0.71402 0.82121 0.81082 0.77990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.98 13.29 21.45 0.28 -52.69 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -29.64 9.11 25.60 0.23 -29.41 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.10 5.09 29.85 0.15 1.25 16 10 C 0.16 6.47 5.61 86.38 0.48 6.96 16 11 N -0.73 -24.04 5.52 -478.53 -2.64 -26.68 16 12 C 0.71 23.64 8.68 179.05 1.55 25.19 16 13 O -0.62 -25.69 17.18 -4.00 -0.07 -25.75 16 14 N -0.52 -13.12 6.29 -184.74 -1.16 -14.28 16 15 N -0.52 -10.33 6.42 -55.43 -0.36 -10.69 16 16 C 0.40 7.28 7.59 133.07 1.01 8.29 16 17 C -0.19 -2.85 9.31 22.50 0.21 -2.64 16 18 C -0.10 -1.34 5.47 -19.70 -0.11 -1.45 16 19 C 0.52 7.55 3.39 71.24 0.24 7.79 16 20 F -0.18 -2.85 17.30 44.97 0.78 -2.07 16 21 F -0.17 -2.41 16.56 44.97 0.74 -1.67 16 22 F -0.18 -2.96 16.55 44.97 0.74 -2.21 16 23 C -0.18 -1.88 9.48 22.37 0.21 -1.66 16 24 C 0.16 1.81 11.17 84.62 0.95 2.75 16 25 N -0.54 -9.56 9.37 -193.26 -1.81 -11.37 16 26 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.40 10.96 6.39 -92.71 -0.59 10.37 16 32 H 0.44 10.82 8.05 -213.33 -1.72 9.10 16 33 H 0.44 7.51 6.69 -213.33 -1.43 6.08 16 34 H 0.16 2.00 7.69 -2.91 -0.02 1.98 16 35 H 0.17 0.90 7.70 -2.91 -0.02 0.87 16 36 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -68.14 332.89 1.38 -66.76 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -2.56 Total: 17.74 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 5.40 Total: 18.01 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -5.68 Total: -115.71 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.07 Total: -25.75 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 2.27 Total: -5.96 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -68.14 1.38 -66.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296731708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.843 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds