Wall clock time and date at job start Tue Mar 31 2020 12:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47406 * 2 1 4 4 C 1.50702 * 109.47064 * 119.99649 * 2 1 3 5 5 N 1.30389 * 126.18865 * 74.97949 * 4 2 1 6 6 N 1.28660 * 109.52882 * 179.74841 * 5 4 2 7 7 C 1.31239 * 109.24742 * 0.44090 * 6 5 4 8 8 C 1.47848 * 126.38154 * 179.82662 * 7 6 5 9 9 C 1.39558 * 120.14368 * 179.41712 * 8 7 6 10 10 C 1.37962 * 119.85145 * 180.27502 * 9 8 7 11 11 C 1.38354 * 120.14654 * 359.97438 * 10 9 8 12 12 N 1.48025 * 119.85457 * 180.02562 * 11 10 9 13 13 O 1.21794 * 119.99835 * 179.97438 * 12 11 10 14 14 O 1.21796 * 119.99951 * 359.97438 * 12 11 10 15 15 C 1.38353 * 120.28869 * 0.02562 * 11 10 9 16 16 C 1.37960 * 120.14409 * 359.97438 * 15 11 10 17 17 O 1.34406 * 126.18678 * 254.99639 * 4 2 1 18 18 N 1.46500 * 109.47412 * 239.99706 * 2 1 3 19 19 C 1.46503 * 120.00094 * 300.00040 * 18 2 1 20 20 C 1.36938 * 120.00148 * 119.99709 * 18 2 1 21 21 H 1.08002 * 119.99842 * 20.43634 * 20 18 2 22 22 C 1.38813 * 120.00156 * 200.43543 * 20 18 2 23 23 N 1.31616 * 119.99709 * 15.04299 * 22 20 18 24 24 Si 1.86799 * 119.99964 * 195.04925 * 22 20 18 25 25 H 1.48493 * 109.47576 * 85.00044 * 24 22 20 26 26 H 1.48502 * 109.47104 * 205.00151 * 24 22 20 27 27 H 1.48497 * 109.47137 * 324.99709 * 24 22 20 28 28 H 1.09000 * 109.47563 * 60.00644 * 1 2 3 29 29 H 1.09007 * 109.47067 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47322 * 300.00180 * 1 2 3 31 31 H 1.08001 * 120.06998 * 0.24807 * 9 8 7 32 32 H 1.08006 * 119.92474 * 179.97438 * 10 9 8 33 33 H 1.07994 * 119.92971 * 179.97438 * 15 11 10 34 34 H 1.08002 * 120.07743 * 180.02562 * 16 15 11 35 35 H 1.09005 * 109.47106 * 95.24038 * 19 18 2 36 36 H 1.08997 * 109.47137 * 215.24079 * 19 18 2 37 37 H 1.09002 * 109.47104 * 335.24770 * 19 18 2 38 38 H 0.97001 * 119.99688 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 7 2.0317 -1.9989 1.4297 6 7 2.5375 -2.2558 2.5845 7 6 2.8722 -1.1301 3.1703 8 6 3.4823 -0.9859 4.5093 9 6 3.7981 0.2808 5.0028 10 6 4.3724 0.4080 6.2508 11 6 4.6349 -0.7166 7.0128 12 7 5.2507 -0.5726 8.3511 13 8 5.4825 -1.5608 9.0243 14 8 5.5257 0.5341 8.7790 15 6 4.3243 -1.9752 6.5293 16 6 3.7497 -2.1162 5.2830 17 8 2.5615 -0.1301 2.3213 18 7 2.0183 -0.6907 -1.1961 19 6 1.6644 -2.0933 -1.4279 20 6 2.8056 -0.0252 -2.0976 21 1 3.3362 0.8660 -1.7965 22 6 2.9216 -0.4961 -3.3982 23 7 2.0672 -1.3874 -3.8540 24 14 4.2905 0.1352 -4.5014 25 1 5.5257 -0.6522 -4.2575 26 1 3.8857 -0.0067 -5.9231 27 1 4.5484 1.5663 -4.2007 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.5937 1.1593 4.4089 32 1 4.6177 1.3876 6.6337 33 1 4.5320 -2.8491 7.1288 34 1 3.5072 -3.0992 4.9069 35 1 0.7903 -2.1450 -2.0771 36 1 2.5010 -2.6052 -1.9035 37 1 1.4386 -2.5732 -0.4756 38 1 2.1480 -1.7161 -4.7630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299567558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:10 Heat of formation + Delta-G solvation = 96.247319 kcal Electronic energy + Delta-G solvation = -25402.547085 eV Core-core repulsion = 21445.001613 eV Total energy + Delta-G solvation = -3957.545472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -43.95683 -42.49099 -39.81995 -36.87815 -36.70173 -35.97671 -33.61477 -32.54969 -31.98048 -30.10363 -29.17092 -27.00295 -26.20017 -24.68637 -24.01065 -23.52477 -22.62744 -21.97379 -20.20315 -19.75361 -18.93632 -17.93391 -17.84233 -17.17361 -17.09314 -16.28884 -15.76037 -15.28513 -15.22080 -14.54314 -14.36566 -13.98008 -13.82893 -13.54367 -13.15812 -12.67846 -12.23422 -12.14644 -11.91393 -11.88088 -11.80391 -11.61375 -11.53055 -11.43908 -11.18130 -11.10725 -10.96398 -10.75043 -10.62052 -10.32926 -10.11437 -9.96127 -9.94303 -8.95293 -8.79574 -7.17777 -5.97245 -3.45252 -0.77557 0.44897 0.65653 1.02844 1.56066 2.16350 2.51076 2.96582 3.25497 3.32111 3.33172 3.59009 3.88727 3.98713 4.25981 4.30231 4.31579 4.66243 4.79122 4.98272 5.09655 5.17710 5.21185 5.25390 5.30207 5.49403 5.57657 5.67058 5.71739 5.73311 5.85523 6.05353 6.11140 6.33913 6.63881 6.91459 7.30950 7.34215 7.55258 7.66352 8.09689 8.46195 8.94264 9.53842 9.98927 11.06316 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.002561 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.675923 B =10932.299343 C =11321.165515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.251 3.749 3 H 0.098 0.902 4 C 0.202 3.798 5 N -0.284 5.284 6 N -0.251 5.251 7 C 0.140 3.860 8 C 0.058 3.942 9 C -0.093 4.093 10 C -0.051 4.051 11 C -0.040 4.040 12 N 0.028 4.972 13 O -0.158 6.158 14 O -0.159 6.159 15 C -0.051 4.051 16 C -0.078 4.078 17 O -0.223 6.223 18 N -0.564 5.564 19 C 0.143 3.857 20 C -0.282 4.282 21 H 0.074 0.926 22 C 0.015 3.985 23 N -0.892 5.892 24 Si 0.911 3.089 25 H -0.285 1.285 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.036 0.964 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 2.574 17.974 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.136 3.864 3 H 0.116 0.884 4 C -0.010 4.010 5 N -0.131 5.131 6 N -0.101 5.101 7 C -0.068 4.068 8 C 0.056 3.944 9 C -0.113 4.113 10 C -0.070 4.070 11 C -0.123 4.123 12 N 0.548 4.452 13 O -0.374 6.374 14 O -0.375 6.375 15 C -0.069 4.069 16 C -0.098 4.098 17 O -0.101 6.101 18 N -0.283 5.283 19 C -0.001 4.001 20 C -0.410 4.410 21 H 0.092 0.908 22 C -0.185 4.185 23 N -0.534 5.534 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.214 1.214 27 H -0.203 1.203 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.175 0.825 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.181 0.819 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.382 1.135 16.823 16.866 hybrid contribution 1.198 1.440 -0.197 1.884 sum 1.580 2.575 16.626 16.899 Atomic orbital electron populations 1.22230 0.94186 1.02826 1.01766 1.19094 0.93375 0.94593 0.79372 0.88366 1.31510 0.91151 0.90161 0.88213 1.74521 1.17829 1.13051 1.07702 1.74672 1.10524 1.22993 1.01924 1.24946 1.04613 0.83023 0.94173 1.17606 0.95101 0.94560 0.87118 1.21327 0.97637 0.97475 0.94884 1.20950 0.94544 0.98735 0.92757 1.21298 1.08378 0.96995 0.85636 1.43601 0.98583 1.00529 1.02482 1.94550 1.56675 1.29548 1.56622 1.94550 1.55255 1.12919 1.74744 1.20984 0.94298 0.96179 0.95487 1.21246 0.96865 0.99657 0.92008 1.84920 1.61067 1.39044 1.25083 1.44098 1.57246 1.09502 1.17502 1.21162 1.00022 0.82070 0.96836 1.19239 1.21667 1.10114 0.90026 0.90812 1.24981 0.98243 0.98804 0.96520 1.70119 1.34410 1.32540 1.16335 0.86197 0.81619 0.78597 0.79629 1.21181 1.21387 1.20262 0.90231 0.91964 0.93401 0.82507 0.82104 0.81962 0.81864 0.94519 0.93919 0.94476 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.18 37.15 0.34 -2.09 16 2 C 0.25 4.70 3.26 -69.09 -0.23 4.48 16 3 H 0.10 1.71 7.85 -51.93 -0.41 1.31 16 4 C 0.20 3.68 7.24 -12.89 -0.09 3.59 16 5 N -0.28 -5.53 9.62 32.58 0.31 -5.21 16 6 N -0.25 -4.33 11.92 32.07 0.38 -3.95 16 7 C 0.14 2.06 7.99 -13.87 -0.11 1.95 16 8 C 0.06 0.62 5.87 -104.98 -0.62 0.00 16 9 C -0.09 -0.79 9.73 -39.19 -0.38 -1.17 16 10 C -0.05 -0.40 9.54 -39.64 -0.38 -0.78 16 11 C -0.04 -0.36 6.86 -79.86 -0.55 -0.91 16 12 N 0.03 0.32 4.45 34.01 0.15 0.47 16 13 O -0.16 -1.86 18.43 -29.46 -0.54 -2.40 16 14 O -0.16 -1.87 18.43 -29.46 -0.54 -2.42 16 15 C -0.05 -0.41 9.54 -39.64 -0.38 -0.78 16 16 C -0.08 -0.69 9.70 -39.19 -0.38 -1.07 16 17 O -0.22 -3.54 10.67 4.02 0.04 -3.50 16 18 N -0.56 -13.22 2.81 -174.81 -0.49 -13.71 16 19 C 0.14 3.43 7.89 59.85 0.47 3.90 16 20 C -0.28 -7.22 9.61 -15.06 -0.14 -7.36 16 21 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.02 0.40 5.06 -17.43 -0.09 0.31 16 23 N -0.89 -24.55 10.67 55.49 0.59 -23.96 16 24 Si 0.91 20.70 29.58 -169.99 -5.03 15.67 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.06 7.67 -51.92 -0.40 0.66 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.16 1.13 7.94 -52.49 -0.42 0.71 16 32 H 0.16 0.99 7.60 -52.48 -0.40 0.59 16 33 H 0.16 1.01 7.60 -52.49 -0.40 0.61 16 34 H 0.16 1.34 7.87 -52.49 -0.41 0.93 16 35 H 0.04 0.93 7.39 -51.93 -0.38 0.55 16 36 H 0.04 1.12 7.23 -51.93 -0.38 0.75 16 37 H 0.04 0.82 5.49 -51.93 -0.29 0.54 16 38 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -29.84 338.40 -6.42 -36.26 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.87 Total: -2.39 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.53 Total: 0.04 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.95 Total: -46.37 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -1.04 Total: -8.32 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.84 -6.42 -36.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299567558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.508 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds