Wall clock time and date at job start Tue Mar 31 2020 12:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00360 * 2 1 4 4 H 1.48501 * 109.47180 * 270.00017 * 3 2 1 5 5 H 1.48500 * 109.47098 * 30.00245 * 3 2 1 6 6 H 1.48503 * 109.46952 * 149.99672 * 3 2 1 7 7 C 1.38816 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00330 * 205.29614 * 7 2 1 9 9 N 1.36942 * 119.99589 * 25.30486 * 7 2 1 10 10 C 1.46498 * 120.00338 * 12.63263 * 9 7 2 11 11 C 1.50706 * 109.46694 * 270.00147 * 10 9 7 12 12 O 1.21271 * 120.00231 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99587 * 180.02562 * 11 10 9 14 14 C 1.38630 * 120.00062 * 180.02562 * 13 11 10 15 15 N 1.31090 * 126.23544 * 359.96305 * 14 13 11 16 16 N 1.28652 * 109.50015 * 179.79073 * 15 14 13 17 17 C 1.31401 * 109.34366 * 0.39078 * 16 15 14 18 18 C 1.46990 * 126.34478 * 179.88808 * 17 16 15 19 19 C 1.36329 * 125.96311 * 359.68186 * 18 17 16 20 20 C 1.40765 * 106.71975 * 179.97438 * 19 18 17 21 21 C 1.34825 * 107.08362 * 0.02562 * 20 19 18 22 22 O 1.34294 * 108.73464 * 359.97438 * 21 20 19 23 23 O 1.34677 * 126.24186 * 180.02562 * 14 13 11 24 24 C 1.46503 * 119.99484 * 192.63233 * 9 7 2 25 25 C 1.52998 * 117.50067 * 14.11409 * 24 9 7 26 26 C 1.52998 * 117.50027 * 305.45564 * 24 9 7 27 27 H 0.97003 * 119.99713 * 355.07259 * 1 2 3 28 28 H 1.08999 * 109.47296 * 150.00597 * 10 9 7 29 29 H 1.08995 * 109.46898 * 29.99925 * 10 9 7 30 30 H 0.96996 * 120.00366 * 359.97438 * 13 11 10 31 31 H 1.08005 * 126.63855 * 359.72140 * 19 18 17 32 32 H 1.08000 * 126.45569 * 179.97438 * 20 19 18 33 33 H 1.08004 * 125.63815 * 179.97438 * 21 20 19 34 34 H 1.08998 * 115.54703 * 159.78997 * 24 9 7 35 35 H 1.09007 * 117.49887 * 0.02562 * 25 24 9 36 36 H 1.09004 * 117.49739 * 145.02189 * 25 24 9 37 37 H 1.09004 * 117.50052 * 214.98561 * 26 24 9 38 38 H 1.09001 * 117.50017 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0125 -1.2470 0.4002 9 7 1.4239 -2.3314 -0.5059 10 6 0.1924 -2.2276 -1.2925 11 6 -0.9993 -2.3249 -0.3750 12 8 -0.8359 -2.4674 0.8181 13 7 -2.2465 -2.2545 -0.8808 14 6 -3.3428 -2.3435 -0.0369 15 7 -3.3083 -2.4968 1.2645 16 7 -4.5093 -2.5351 1.7243 17 6 -5.3600 -2.4158 0.7301 18 6 -6.8263 -2.4141 0.8336 19 6 -7.5479 -2.5428 1.9831 20 6 -8.9059 -2.4862 1.6172 21 6 -8.9493 -2.3283 0.2789 22 8 -7.6922 -2.2849 -0.1912 23 8 -4.6372 -2.2893 -0.4047 24 6 2.0283 -3.6433 -0.2610 25 6 3.1047 -3.7341 0.8226 26 6 3.4951 -3.8299 -0.6544 27 1 -0.4850 0.8370 0.0722 28 1 0.1571 -3.0377 -2.0209 29 1 0.1732 -1.2700 -1.8127 30 1 -2.3772 -2.1409 -1.8352 31 1 -7.1538 -2.6684 2.9808 32 1 -9.7534 -2.5569 2.2830 33 1 -9.8469 -2.2497 -0.3167 34 1 1.3623 -4.4976 -0.3817 35 1 3.3628 -2.8178 1.3536 36 1 3.1470 -4.6484 1.4146 37 1 3.7941 -4.8071 -1.0335 38 1 4.0102 -2.9767 -1.0958 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339982667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:02 Heat of formation + Delta-G solvation = 111.081102 kcal Electronic energy + Delta-G solvation = -25990.926571 eV Core-core repulsion = 22034.024340 eV Total energy + Delta-G solvation = -3956.902231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.73107 -42.72420 -38.93425 -36.99679 -35.86208 -34.36173 -33.49870 -33.36423 -31.57578 -30.69563 -28.51559 -26.89349 -24.31321 -24.06417 -23.08734 -21.76997 -21.50044 -21.14674 -20.20245 -19.74268 -18.49906 -18.09289 -17.30645 -16.47349 -16.15700 -16.08866 -15.97929 -15.77618 -14.90077 -14.48257 -14.06182 -13.66279 -13.36992 -13.22404 -13.12993 -12.86462 -12.56979 -12.12628 -12.03204 -11.51707 -11.44042 -11.08389 -10.93572 -10.76446 -10.66199 -10.52532 -10.47790 -10.22584 -10.08299 -9.94166 -9.49793 -9.23525 -8.91905 -8.56384 -7.85968 -7.03249 -6.04621 -3.30371 0.70017 1.76411 1.90715 2.40244 2.44068 2.96681 3.29181 3.37603 3.39625 3.58977 3.97758 4.32060 4.50378 4.70437 4.77479 4.85914 4.93615 5.08475 5.16314 5.28520 5.40717 5.58198 5.73921 5.75787 5.77100 5.89064 5.95167 6.01358 6.17298 6.30405 6.37772 6.43871 6.71536 6.72295 6.81083 6.85049 7.01048 7.64751 7.74515 8.07133 8.73501 8.92079 9.20729 9.58834 9.99525 11.05652 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.003123 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.624690 B = 8962.740528 C = 9714.557169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.004 3.996 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.087 0.913 9 N -0.531 5.531 10 C 0.179 3.821 11 C 0.515 3.485 12 O -0.442 6.442 13 N -0.619 5.619 14 C 0.422 3.578 15 N -0.271 5.271 16 N -0.228 5.228 17 C 0.184 3.816 18 C 0.067 3.933 19 C -0.139 4.139 20 C -0.213 4.213 21 C -0.020 4.020 22 O -0.167 6.167 23 O -0.243 6.243 24 C 0.123 3.877 25 C -0.198 4.198 26 C -0.218 4.218 27 H 0.260 0.740 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.413 0.587 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.211 0.789 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.579 -5.778 -5.091 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.743 3.257 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.104 0.896 9 N -0.245 5.245 10 C 0.047 3.953 11 C 0.300 3.700 12 O -0.303 6.303 13 N -0.280 5.280 14 C 0.124 3.876 15 N -0.128 5.128 16 N -0.079 5.079 17 C -0.025 4.025 18 C 0.016 3.984 19 C -0.161 4.161 20 C -0.232 4.232 21 C -0.089 4.089 22 O -0.062 6.062 23 O -0.123 6.123 24 C 0.014 3.986 25 C -0.237 4.237 26 C -0.258 4.258 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.249 0.751 31 H 0.182 0.818 32 H 0.176 0.824 33 H 0.228 0.772 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.770 -5.801 -3.387 14.429 hybrid contribution -0.470 1.341 -1.353 1.962 sum -13.240 -4.460 -4.740 14.754 Atomic orbital electron populations 1.69696 1.05256 1.26168 1.53140 1.24811 0.95239 0.98552 1.00826 0.86098 0.79115 0.82822 0.77665 1.21273 1.21868 1.20404 1.19268 0.97744 0.84476 1.37027 0.89564 1.43727 1.21999 1.01369 1.57373 1.20692 0.82012 1.01835 0.90734 1.23555 0.80429 0.73612 0.92401 1.90704 1.81995 1.41999 1.15620 1.44579 1.00862 1.72874 1.09713 1.24350 0.78738 0.94765 0.89741 1.75417 1.10422 1.23538 1.03471 1.74813 0.94970 1.13306 1.24796 1.22931 0.90451 1.09125 0.80035 1.17841 0.83152 1.11020 0.86427 1.21835 0.92211 1.03449 0.98616 1.21813 0.97356 1.08463 0.95528 1.24287 0.84942 1.04437 0.95226 1.84128 1.15860 1.70827 1.35407 1.84854 1.17624 1.72945 1.36893 1.20999 0.88141 0.88704 1.00738 1.23149 1.06727 1.02235 0.91588 1.23408 1.02991 1.01209 0.98203 0.92987 0.92584 0.87481 0.75063 0.81752 0.82366 0.77230 0.88951 0.88358 0.90417 0.90466 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.14 8.85 55.49 0.49 -23.65 16 2 C 0.00 0.11 4.83 -17.43 -0.08 0.03 16 3 Si 0.91 21.01 29.63 -169.99 -5.04 15.97 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.55 8.89 -15.06 -0.13 -6.68 16 8 H 0.09 2.20 6.28 -52.49 -0.33 1.87 16 9 N -0.53 -12.22 2.38 -167.02 -0.40 -12.62 16 10 C 0.18 3.67 5.48 -5.19 -0.03 3.65 16 11 C 0.51 11.41 5.75 -10.98 -0.06 11.35 16 12 O -0.44 -12.00 14.56 5.56 0.08 -11.92 16 13 N -0.62 -11.47 5.39 -12.92 -0.07 -11.54 16 14 C 0.42 8.59 9.07 -86.51 -0.79 7.81 16 15 N -0.27 -6.29 10.44 29.96 0.31 -5.98 16 16 N -0.23 -4.68 12.23 31.95 0.39 -4.29 16 17 C 0.18 3.30 8.27 -14.19 -0.12 3.19 16 18 C 0.07 0.97 7.24 -36.72 -0.27 0.71 16 19 C -0.14 -1.66 10.83 -39.31 -0.43 -2.09 16 20 C -0.21 -1.87 10.88 -39.84 -0.43 -2.30 16 21 C -0.02 -0.17 12.08 29.52 0.36 0.19 16 22 O -0.17 -2.13 10.68 4.39 0.05 -2.08 16 23 O -0.24 -4.44 10.92 2.32 0.03 -4.42 16 24 C 0.12 2.48 6.60 -67.93 -0.45 2.03 16 25 C -0.20 -3.81 9.77 -26.70 -0.26 -4.07 16 26 C -0.22 -3.82 10.14 -26.70 -0.27 -4.09 16 27 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 28 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.11 2.28 6.61 -51.93 -0.34 1.94 16 30 H 0.41 5.73 8.82 -40.82 -0.36 5.37 16 31 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.10 2.09 6.44 -51.93 -0.33 1.76 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -33.85 337.50 -5.91 -39.76 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -3.88 Total: 5.96 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -2.96 Total: 9.71 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.73 Total: -58.08 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.15 Total: -18.41 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.04 Total: 15.97 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.85 -5.91 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339982667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.842 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds