Wall clock time and date at job start Tue Mar 31 2020 12:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00360 * 2 1 4 4 H 1.48501 * 109.47180 * 270.00017 * 3 2 1 5 5 H 1.48500 * 109.47098 * 30.00245 * 3 2 1 6 6 H 1.48503 * 109.46952 * 149.99672 * 3 2 1 7 7 C 1.38816 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00330 * 205.29614 * 7 2 1 9 9 N 1.36942 * 119.99589 * 25.30486 * 7 2 1 10 10 C 1.46498 * 120.00338 * 12.63263 * 9 7 2 11 11 C 1.50706 * 109.46694 * 270.00147 * 10 9 7 12 12 O 1.21271 * 120.00231 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99587 * 180.02562 * 11 10 9 14 14 C 1.38630 * 120.00062 * 180.02562 * 13 11 10 15 15 N 1.31090 * 126.23544 * 359.96305 * 14 13 11 16 16 N 1.28652 * 109.50015 * 179.79073 * 15 14 13 17 17 C 1.31401 * 109.34366 * 0.39078 * 16 15 14 18 18 C 1.46990 * 126.34478 * 179.88808 * 17 16 15 19 19 C 1.36329 * 125.96311 * 359.68186 * 18 17 16 20 20 C 1.40765 * 106.71975 * 179.97438 * 19 18 17 21 21 C 1.34825 * 107.08362 * 0.02562 * 20 19 18 22 22 O 1.34294 * 108.73464 * 359.97438 * 21 20 19 23 23 O 1.34677 * 126.24186 * 180.02562 * 14 13 11 24 24 C 1.46503 * 119.99484 * 192.63233 * 9 7 2 25 25 C 1.52998 * 117.50067 * 14.11409 * 24 9 7 26 26 C 1.52998 * 117.50027 * 305.45564 * 24 9 7 27 27 H 0.97003 * 119.99713 * 355.07259 * 1 2 3 28 28 H 1.08999 * 109.47296 * 150.00597 * 10 9 7 29 29 H 1.08995 * 109.46898 * 29.99925 * 10 9 7 30 30 H 0.96996 * 120.00366 * 359.97438 * 13 11 10 31 31 H 1.08005 * 126.63855 * 359.72140 * 19 18 17 32 32 H 1.08000 * 126.45569 * 179.97438 * 20 19 18 33 33 H 1.08004 * 125.63815 * 179.97438 * 21 20 19 34 34 H 1.08998 * 115.54703 * 159.78997 * 24 9 7 35 35 H 1.09007 * 117.49887 * 0.02562 * 25 24 9 36 36 H 1.09004 * 117.49739 * 145.02189 * 25 24 9 37 37 H 1.09004 * 117.50052 * 214.98561 * 26 24 9 38 38 H 1.09001 * 117.50017 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0125 -1.2470 0.4002 9 7 1.4239 -2.3314 -0.5059 10 6 0.1924 -2.2276 -1.2925 11 6 -0.9993 -2.3249 -0.3750 12 8 -0.8359 -2.4674 0.8181 13 7 -2.2465 -2.2545 -0.8808 14 6 -3.3428 -2.3435 -0.0369 15 7 -3.3083 -2.4968 1.2645 16 7 -4.5093 -2.5351 1.7243 17 6 -5.3600 -2.4158 0.7301 18 6 -6.8263 -2.4141 0.8336 19 6 -7.5479 -2.5428 1.9831 20 6 -8.9059 -2.4862 1.6172 21 6 -8.9493 -2.3283 0.2789 22 8 -7.6922 -2.2849 -0.1912 23 8 -4.6372 -2.2893 -0.4047 24 6 2.0283 -3.6433 -0.2610 25 6 3.1047 -3.7341 0.8226 26 6 3.4951 -3.8299 -0.6544 27 1 -0.4850 0.8370 0.0722 28 1 0.1571 -3.0377 -2.0209 29 1 0.1732 -1.2700 -1.8127 30 1 -2.3772 -2.1409 -1.8352 31 1 -7.1538 -2.6684 2.9808 32 1 -9.7534 -2.5569 2.2830 33 1 -9.8469 -2.2497 -0.3167 34 1 1.3623 -4.4976 -0.3817 35 1 3.3628 -2.8178 1.3536 36 1 3.1470 -4.6484 1.4146 37 1 3.7941 -4.8071 -1.0335 38 1 4.0102 -2.9767 -1.0958 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339982667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:01 Heat of formation + Delta-G solvation = 84.305062 kcal Electronic energy + Delta-G solvation = -25992.087667 eV Core-core repulsion = 22034.024340 eV Total energy + Delta-G solvation = -3958.063327 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.21082 -43.62264 -40.62539 -38.59832 -37.36562 -35.99671 -35.26116 -34.29072 -32.83789 -32.43209 -29.82210 -28.54078 -26.07268 -25.38866 -24.58231 -22.98474 -22.74147 -22.19841 -21.80313 -21.35281 -19.87314 -19.32572 -18.76747 -18.20390 -17.76409 -17.48264 -17.11184 -17.08514 -16.22717 -16.15405 -15.85671 -15.35172 -14.94032 -14.27641 -14.22769 -13.96709 -13.70523 -13.61437 -13.59463 -13.21094 -13.03054 -12.75564 -12.66959 -12.34295 -12.24733 -12.20548 -12.11447 -11.88184 -11.72991 -11.11819 -11.01172 -10.67101 -10.45266 -10.42393 -9.15774 -8.80305 -7.98500 -5.24026 -0.50942 0.32830 0.73007 1.34009 1.40858 1.45681 1.48335 1.55703 1.70320 2.22196 2.35191 2.51928 3.09919 3.30337 3.41221 3.43873 3.60992 3.80308 3.91078 4.04522 4.17400 4.27126 4.38936 4.43008 4.48199 4.67205 4.80816 4.91273 4.91542 4.92742 4.97617 5.12854 5.24875 5.31454 5.42305 5.51771 5.68514 5.89243 6.15872 6.30635 7.02294 7.22686 7.55257 7.78410 8.13188 9.08308 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.003123 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.624690 B = 8962.740528 C = 9714.557169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.043 4.043 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.308 1.308 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.078 0.922 9 N -0.549 5.549 10 C 0.180 3.820 11 C 0.522 3.478 12 O -0.499 6.499 13 N -0.604 5.604 14 C 0.412 3.588 15 N -0.318 5.318 16 N -0.268 5.268 17 C 0.212 3.788 18 C 0.008 3.992 19 C -0.119 4.119 20 C -0.218 4.218 21 C 0.012 3.988 22 O -0.183 6.183 23 O -0.237 6.237 24 C 0.099 3.901 25 C -0.209 4.209 26 C -0.184 4.184 27 H 0.247 0.753 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.434 0.566 31 H 0.167 0.833 32 H 0.195 0.805 33 H 0.263 0.737 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.724 -6.710 -6.579 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.239 4.239 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.235 1.235 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.096 0.904 9 N -0.263 5.263 10 C 0.048 3.952 11 C 0.309 3.691 12 O -0.365 6.365 13 N -0.268 5.268 14 C 0.112 3.888 15 N -0.174 5.174 16 N -0.117 5.117 17 C 0.002 3.998 18 C -0.042 4.042 19 C -0.141 4.141 20 C -0.236 4.236 21 C -0.057 4.057 22 O -0.079 6.079 23 O -0.117 6.117 24 C -0.009 4.009 25 C -0.247 4.247 26 C -0.224 4.224 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.275 0.725 31 H 0.184 0.816 32 H 0.213 0.787 33 H 0.278 0.722 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.904 -6.760 -4.903 17.084 hybrid contribution -0.125 1.550 -0.871 1.783 sum -15.029 -5.210 -5.774 16.922 Atomic orbital electron populations 1.69869 1.06003 1.25463 1.54976 1.25383 0.95872 1.00784 1.01814 0.85268 0.77703 0.79655 0.77730 1.20203 1.23546 1.20336 1.19388 0.97495 0.85688 1.35905 0.90378 1.43892 1.22986 1.01807 1.57638 1.20820 0.80544 1.03125 0.90684 1.23737 0.81489 0.72107 0.91760 1.90677 1.83168 1.44760 1.17893 1.44059 0.99842 1.72317 1.10558 1.24193 0.79577 0.95572 0.89449 1.75286 1.12094 1.24897 1.05116 1.74710 0.94713 1.16658 1.25590 1.23677 0.91932 1.05057 0.79169 1.17739 0.81856 1.16676 0.87967 1.22218 0.93806 1.00101 0.98001 1.22247 0.96616 1.08413 0.96358 1.25469 0.84567 0.99737 0.95908 1.84127 1.17136 1.71235 1.35355 1.84855 1.16829 1.73049 1.36991 1.21314 0.89445 0.88039 1.02113 1.23150 1.06965 1.01913 0.92703 1.23368 1.00175 1.02592 0.96269 0.94318 0.87824 0.88462 0.72533 0.81581 0.78735 0.72159 0.87438 0.91208 0.88373 0.86865 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.90 8.85 21.65 0.19 -50.70 16 2 C -0.04 -2.28 4.83 84.86 0.41 -1.87 16 3 Si 0.97 44.29 29.63 68.60 2.03 46.32 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.26 -13.25 8.89 84.03 0.75 -12.50 16 8 H 0.08 4.09 6.28 -2.91 -0.02 4.07 16 9 N -0.55 -25.31 2.38 -682.34 -1.62 -26.93 16 10 C 0.18 7.32 5.48 85.64 0.47 7.79 16 11 C 0.52 23.65 5.75 87.66 0.50 24.15 16 12 O -0.50 -28.19 14.56 -3.00 -0.04 -28.24 16 13 N -0.60 -22.86 5.39 -423.14 -2.28 -25.14 16 14 C 0.41 17.38 9.07 178.91 1.62 19.01 16 15 N -0.32 -15.51 10.44 -173.12 -1.81 -17.32 16 16 N -0.27 -11.58 12.23 -166.41 -2.04 -13.61 16 17 C 0.21 7.81 8.27 87.05 0.72 8.53 16 18 C 0.01 0.23 7.24 24.12 0.17 0.41 16 19 C -0.12 -2.64 10.83 22.44 0.24 -2.40 16 20 C -0.22 -2.95 10.88 22.10 0.24 -2.71 16 21 C 0.01 0.15 12.08 67.04 0.81 0.96 16 22 O -0.18 -4.24 10.68 -7.20 -0.08 -4.32 16 23 O -0.24 -8.86 10.92 -14.61 -0.16 -9.02 16 24 C 0.10 3.88 6.60 44.99 0.30 4.18 16 25 C -0.21 -7.91 9.77 30.62 0.30 -7.61 16 26 C -0.18 -6.07 10.14 30.62 0.31 -5.76 16 27 H 0.25 13.91 8.32 -92.71 -0.77 13.14 16 28 H 0.10 3.17 8.07 -2.39 -0.02 3.15 16 29 H 0.10 4.17 6.61 -2.39 -0.02 4.15 16 30 H 0.43 12.00 8.82 -92.71 -0.82 11.18 16 31 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.26 0.30 8.06 -2.91 -0.02 0.28 16 34 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 35 H 0.07 3.04 6.44 -2.38 -0.02 3.03 16 36 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 37 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -78.92 337.50 1.36 -77.56 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.32 Total: 19.25 kcal Atomic # 6 Polarization: 25.32 SS G_CDS: 6.85 Total: 32.17 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -7.55 Total: -133.72 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.28 Total: -41.57 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -78.92 1.36 -77.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339982667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.862 kcal (2) G-P(sol) polarization free energy of solvation -78.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds