Wall clock time and date at job start Tue Mar 31 2020 11:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21297 * 120.00502 * 2 1 4 4 C 1.46789 * 119.99873 * 179.97438 * 2 1 3 5 5 C 1.40016 * 120.22196 * 0.02562 * 4 2 1 6 6 C 1.37673 * 119.87844 * 179.97438 * 5 4 2 7 7 N 1.48021 * 119.83376 * 179.97438 * 6 5 4 8 8 O 1.21801 * 119.99256 * 359.97438 * 7 6 5 9 9 O 1.21793 * 120.00584 * 180.02562 * 7 6 5 10 10 C 1.38631 * 120.33940 * 359.72320 * 6 5 4 11 11 C 1.38048 * 120.45580 * 0.55892 * 10 6 5 12 12 C 1.38699 * 120.10932 * 359.44060 * 11 10 6 13 13 O 1.35594 * 120.16829 * 180.30118 * 12 11 10 14 14 C 1.42899 * 117.00171 * 0.02562 * 13 12 11 15 15 C 1.52999 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47771 * 54.99519 * 15 14 13 17 17 C 1.47201 * 109.46979 * 294.99319 * 15 14 13 18 18 N 5.35624 * 142.07244 * 317.39971 * 2 1 3 19 19 C 1.53004 * 109.47179 * 174.99925 * 15 14 13 20 20 C 1.50701 * 109.47105 * 184.99849 * 19 15 14 21 21 H 1.07991 * 120.00112 * 359.97438 * 20 19 15 22 22 C 1.37882 * 119.99661 * 179.97438 * 20 19 15 23 23 N 1.31510 * 120.00006 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99801 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47200 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47062 * 120.00377 * 24 22 20 27 27 H 1.48495 * 109.47093 * 240.00292 * 24 22 20 28 28 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46979 * 300.00102 * 1 2 3 30 30 H 1.08996 * 109.46916 * 59.99755 * 1 2 3 31 31 H 1.07992 * 120.05964 * 359.95528 * 5 4 2 32 32 H 1.08003 * 119.77069 * 180.29832 * 10 6 5 33 33 H 1.08002 * 119.94939 * 179.72466 * 11 10 6 34 34 H 1.08998 * 109.47058 * 299.99476 * 14 13 12 35 35 H 1.08990 * 109.47408 * 60.00130 * 14 13 12 36 36 H 1.08999 * 109.46619 * 304.99517 * 19 15 14 37 37 H 1.08995 * 109.47127 * 64.99175 * 19 15 14 38 38 H 0.97002 * 119.99852 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2409 -1.2712 0.0006 5 6 1.5455 -2.4865 0.0006 6 6 2.2410 -3.6747 0.0006 7 7 1.5048 -4.9588 0.0011 8 8 0.2868 -4.9624 0.0021 9 8 2.1169 -6.0118 0.0016 10 6 3.6273 -3.6746 -0.0052 11 6 4.3270 -2.4846 0.0006 12 6 3.6454 -1.2766 0.0005 13 8 4.3315 -0.1071 0.0001 14 6 5.7579 -0.1917 -0.0010 15 6 6.3524 1.2181 -0.0007 16 1 5.9510 1.7817 0.8415 17 6 6.0018 1.8986 -1.2581 18 7 5.7319 2.4234 -2.2285 19 6 7.8748 1.1297 0.1239 20 6 8.4501 2.5170 0.2476 21 1 7.7955 3.3759 0.2379 22 6 9.8123 2.6897 0.3733 23 7 10.6094 1.6438 0.3846 24 14 10.5255 4.4094 0.5259 25 1 9.4260 5.4067 0.4857 26 1 11.2557 4.5300 1.8133 27 1 11.4618 4.6586 -0.5994 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.4656 -2.4918 0.0009 32 1 4.1636 -4.6121 -0.0100 33 1 5.4070 -2.4941 0.0005 34 1 6.0908 -0.7261 0.8888 35 1 6.0896 -0.7261 -0.8911 36 1 8.1336 0.5487 1.0091 37 1 8.2842 0.6441 -0.7618 38 1 11.5678 1.7654 0.4727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340162353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:21 Heat of formation + Delta-G solvation = -31.460276 kcal Electronic energy + Delta-G solvation = -25307.761399 eV Core-core repulsion = 21312.385359 eV Total energy + Delta-G solvation = -3995.376040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43391 -41.09409 -39.13961 -38.17233 -36.79389 -36.39843 -33.99785 -32.84149 -32.29324 -31.35305 -29.85761 -27.68578 -26.29903 -24.97751 -24.04448 -22.30753 -22.06629 -20.80386 -19.09476 -18.83914 -18.66529 -17.76884 -17.47720 -16.90783 -16.39431 -16.08199 -15.82593 -15.41775 -15.09574 -14.76152 -14.67464 -14.15987 -13.86214 -13.44960 -13.18399 -13.07811 -12.54956 -12.47128 -12.39439 -12.22993 -12.12992 -11.78588 -11.63234 -11.46854 -11.37338 -11.36150 -11.19508 -10.90506 -10.70273 -10.49720 -10.02404 -9.97140 -9.86250 -9.44769 -9.16072 -8.61012 -6.25486 -4.29469 -0.41036 -0.00128 1.00812 1.12354 1.94231 2.56371 2.93293 3.19939 3.28804 3.33708 3.43273 3.46767 3.54695 3.84975 4.08554 4.13681 4.28932 4.43655 4.47111 4.70871 4.76297 4.81558 4.89937 5.08439 5.09808 5.13666 5.17391 5.21203 5.37325 5.43621 5.58005 5.66673 5.97258 6.11201 6.16246 6.75976 7.15114 7.24755 7.25301 7.40096 7.69772 8.02250 8.28002 8.74723 9.37410 10.85387 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.002837 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.831090 B = 9866.145269 C =10986.588213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.391 3.609 3 O -0.421 6.421 4 C -0.210 4.210 5 C 0.027 3.973 6 C -0.105 4.105 7 N 0.039 4.961 8 O -0.169 6.169 9 O -0.165 6.165 10 C 0.015 3.985 11 C -0.220 4.220 12 C 0.243 3.757 13 O -0.267 6.267 14 C 0.050 3.950 15 C 0.015 3.985 16 H 0.117 0.883 17 C 0.240 3.760 18 N -0.460 5.460 19 C 0.034 3.966 20 C -0.530 4.530 21 H 0.060 0.940 22 C 0.064 3.936 23 N -0.890 5.890 24 Si 0.894 3.106 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.232 -11.760 2.413 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.266 3.734 3 O -0.293 6.293 4 C -0.212 4.212 5 C 0.008 3.992 6 C -0.189 4.189 7 N 0.556 4.444 8 O -0.383 6.383 9 O -0.380 6.380 10 C -0.005 4.005 11 C -0.239 4.239 12 C 0.191 3.809 13 O -0.175 6.175 14 C -0.025 4.025 15 C -0.007 4.007 16 H 0.135 0.865 17 C -0.077 4.077 18 N -0.136 5.136 19 C -0.004 4.004 20 C -0.567 4.567 21 H 0.079 0.921 22 C -0.138 4.138 23 N -0.528 5.528 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.185 0.815 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.826 -9.592 0.955 19.392 hybrid contribution 0.659 0.033 0.445 0.796 sum -16.167 -9.559 1.400 18.834 Atomic orbital electron populations 1.22246 0.93197 1.04684 1.05533 1.22049 0.91561 0.86825 0.72958 1.90704 1.71508 1.33128 1.33998 1.19989 0.90955 0.95603 1.14679 1.21168 1.01889 0.88369 0.87752 1.20794 0.92631 0.83703 1.21729 1.43450 1.01123 1.02630 0.97197 1.94532 0.95523 1.94205 1.54011 1.94547 1.69787 1.19832 1.53818 1.21016 0.90828 1.00427 0.88180 1.21452 1.02332 0.90199 1.09902 1.19686 0.90998 0.86188 0.83995 1.86412 1.21825 1.26109 1.83202 1.23514 0.75461 0.99966 1.03571 1.19289 1.01230 0.90425 0.89742 0.86541 1.28790 0.91304 0.93368 0.94269 1.81014 1.10940 1.09281 1.12393 1.19200 0.82830 0.99232 0.99103 1.21087 0.92263 0.91826 1.51573 0.92148 1.24941 0.97069 0.97188 0.94636 1.69928 1.04159 1.29274 1.49468 0.86480 0.79248 0.84263 0.77815 1.19566 1.20706 1.20848 0.90050 0.88323 0.88400 0.81473 0.82137 0.81826 0.88804 0.90301 0.93889 0.95159 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 10.19 36.01 0.37 -0.90 16 2 C 0.39 4.19 7.22 -30.85 -0.22 3.97 16 3 O -0.42 -6.43 15.91 -16.37 -0.26 -6.69 16 4 C -0.21 -2.09 5.88 -104.94 -0.62 -2.71 16 5 C 0.03 0.22 8.94 -39.12 -0.35 -0.13 16 6 C -0.10 -0.97 6.84 -80.01 -0.55 -1.52 16 7 N 0.04 0.43 4.45 33.93 0.15 0.58 16 8 O -0.17 -1.95 18.43 -29.46 -0.54 -2.49 16 9 O -0.16 -1.97 18.43 -29.46 -0.54 -2.51 16 10 C 0.01 0.12 9.54 -39.51 -0.38 -0.26 16 11 C -0.22 -1.87 9.03 -39.48 -0.36 -2.22 16 12 C 0.24 2.66 6.71 -38.58 -0.26 2.40 16 13 O -0.27 -3.60 7.95 -40.39 -0.32 -3.92 16 14 C 0.05 0.63 4.09 37.16 0.15 0.78 16 15 C 0.01 0.25 2.45 -93.40 -0.23 0.02 16 16 H 0.12 1.91 8.14 -51.93 -0.42 1.49 16 17 C 0.24 4.84 13.71 -20.77 -0.28 4.55 16 18 N -0.46 -10.19 18.54 42.15 0.78 -9.41 16 19 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 20 C -0.53 -13.36 8.60 -34.44 -0.30 -13.66 16 21 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -24.19 13.29 55.43 0.74 -23.45 16 24 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 H 0.08 0.33 5.60 -51.93 -0.29 0.03 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.17 0.97 5.46 -52.49 -0.29 0.68 16 32 H 0.16 1.01 7.59 -52.48 -0.40 0.61 16 33 H 0.16 1.08 6.30 -52.49 -0.33 0.75 16 34 H 0.09 0.92 7.66 -51.93 -0.40 0.52 16 35 H 0.08 0.90 7.66 -51.93 -0.40 0.50 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -32.51 347.80 -6.77 -39.28 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: -3.75 Total: -4.69 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.24 Total: -7.47 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 1.67 Total: -32.28 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -1.67 Total: -15.63 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.51 -6.77 -39.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340162353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.818 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds