Wall clock time and date at job start Tue Mar 31 2020 11:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21297 * 120.00502 * 2 1 4 4 C 1.46789 * 119.99873 * 179.97438 * 2 1 3 5 5 C 1.40016 * 120.22196 * 0.02562 * 4 2 1 6 6 C 1.37673 * 119.87844 * 179.97438 * 5 4 2 7 7 N 1.48021 * 119.83376 * 179.97438 * 6 5 4 8 8 O 1.21801 * 119.99256 * 359.97438 * 7 6 5 9 9 O 1.21793 * 120.00584 * 180.02562 * 7 6 5 10 10 C 1.38631 * 120.33940 * 359.72320 * 6 5 4 11 11 C 1.38048 * 120.45580 * 0.55892 * 10 6 5 12 12 C 1.38699 * 120.10932 * 359.44060 * 11 10 6 13 13 O 1.35594 * 120.16829 * 180.30118 * 12 11 10 14 14 C 1.42899 * 117.00171 * 0.02562 * 13 12 11 15 15 C 1.52999 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47771 * 54.99519 * 15 14 13 17 17 C 1.47201 * 109.46979 * 294.99319 * 15 14 13 18 18 N 5.35624 * 142.07244 * 317.39971 * 2 1 3 19 19 C 1.53004 * 109.47179 * 174.99925 * 15 14 13 20 20 C 1.50701 * 109.47105 * 184.99849 * 19 15 14 21 21 H 1.07991 * 120.00112 * 359.97438 * 20 19 15 22 22 C 1.37882 * 119.99661 * 179.97438 * 20 19 15 23 23 N 1.31510 * 120.00006 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99801 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47200 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47062 * 120.00377 * 24 22 20 27 27 H 1.48495 * 109.47093 * 240.00292 * 24 22 20 28 28 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46979 * 300.00102 * 1 2 3 30 30 H 1.08996 * 109.46916 * 59.99755 * 1 2 3 31 31 H 1.07992 * 120.05964 * 359.95528 * 5 4 2 32 32 H 1.08003 * 119.77069 * 180.29832 * 10 6 5 33 33 H 1.08002 * 119.94939 * 179.72466 * 11 10 6 34 34 H 1.08998 * 109.47058 * 299.99476 * 14 13 12 35 35 H 1.08990 * 109.47408 * 60.00130 * 14 13 12 36 36 H 1.08999 * 109.46619 * 304.99517 * 19 15 14 37 37 H 1.08995 * 109.47127 * 64.99175 * 19 15 14 38 38 H 0.97002 * 119.99852 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2409 -1.2712 0.0006 5 6 1.5455 -2.4865 0.0006 6 6 2.2410 -3.6747 0.0006 7 7 1.5048 -4.9588 0.0011 8 8 0.2868 -4.9624 0.0021 9 8 2.1169 -6.0118 0.0016 10 6 3.6273 -3.6746 -0.0052 11 6 4.3270 -2.4846 0.0006 12 6 3.6454 -1.2766 0.0005 13 8 4.3315 -0.1071 0.0001 14 6 5.7579 -0.1917 -0.0010 15 6 6.3524 1.2181 -0.0007 16 1 5.9510 1.7817 0.8415 17 6 6.0018 1.8986 -1.2581 18 7 5.7319 2.4234 -2.2285 19 6 7.8748 1.1297 0.1239 20 6 8.4501 2.5170 0.2476 21 1 7.7955 3.3759 0.2379 22 6 9.8123 2.6897 0.3733 23 7 10.6094 1.6438 0.3846 24 14 10.5255 4.4094 0.5259 25 1 9.4260 5.4067 0.4857 26 1 11.2557 4.5300 1.8133 27 1 11.4618 4.6586 -0.5994 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.4656 -2.4918 0.0009 32 1 4.1636 -4.6121 -0.0100 33 1 5.4070 -2.4941 0.0005 34 1 6.0908 -0.7261 0.8888 35 1 6.0896 -0.7261 -0.8911 36 1 8.1336 0.5487 1.0091 37 1 8.2842 0.6441 -0.7618 38 1 11.5678 1.7654 0.4727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340162353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:20 Heat of formation + Delta-G solvation = -48.376423 kcal Electronic energy + Delta-G solvation = -25308.494938 eV Core-core repulsion = 21312.385359 eV Total energy + Delta-G solvation = -3996.109579 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.24724 -41.91768 -40.06802 -39.05844 -37.87692 -37.64242 -35.71168 -33.97481 -33.52786 -32.24494 -30.50892 -29.12075 -27.24389 -25.97210 -25.13456 -23.71576 -23.13183 -21.57970 -19.89313 -19.66132 -19.56734 -18.79318 -18.57815 -18.46784 -17.49011 -16.92185 -16.81202 -16.56902 -16.10540 -15.96749 -15.65643 -15.12592 -14.89266 -14.71830 -14.36559 -14.19282 -13.99044 -13.82033 -13.32223 -13.10642 -13.03677 -13.00311 -12.95594 -12.65286 -12.53744 -12.49708 -12.35835 -12.27280 -12.25265 -11.99134 -11.62960 -11.29459 -10.84297 -10.64821 -10.58834 -9.97139 -8.24666 -6.31727 -1.21739 -0.70154 0.20963 0.34024 1.18540 1.36890 1.41220 1.50122 1.64140 1.89484 1.93989 2.20738 2.39437 2.78248 3.04508 3.13562 3.20135 3.38178 3.46133 3.70970 3.83410 4.04453 4.06844 4.14936 4.22199 4.37808 4.49833 4.58748 4.62171 4.63299 4.68853 4.77918 4.92888 5.15323 5.29489 5.39455 5.52662 5.72896 5.89973 6.14457 6.48665 6.51933 6.67402 6.81147 7.37113 8.86098 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.002837 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.831090 B = 9866.145269 C =10986.588213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.390 3.610 3 O -0.478 6.478 4 C -0.222 4.222 5 C 0.044 3.956 6 C -0.112 4.112 7 N 0.040 4.960 8 O -0.173 6.173 9 O -0.185 6.185 10 C 0.023 3.977 11 C -0.212 4.212 12 C 0.225 3.775 13 O -0.291 6.291 14 C 0.056 3.944 15 C 0.021 3.979 16 H 0.124 0.876 17 C 0.251 3.749 18 N -0.502 5.502 19 C 0.042 3.958 20 C -0.542 4.542 21 H 0.050 0.950 22 C 0.018 3.982 23 N -0.917 5.917 24 Si 0.944 3.056 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.285 1.285 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.193 0.807 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.014 0.986 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.204 -13.011 3.088 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.269 3.731 3 O -0.355 6.355 4 C -0.225 4.225 5 C 0.025 3.975 6 C -0.196 4.196 7 N 0.554 4.446 8 O -0.388 6.388 9 O -0.396 6.396 10 C 0.004 3.996 11 C -0.231 4.231 12 C 0.175 3.825 13 O -0.200 6.200 14 C -0.019 4.019 15 C 0.000 4.000 16 H 0.142 0.858 17 C -0.066 4.066 18 N -0.179 5.179 19 C 0.004 3.996 20 C -0.580 4.580 21 H 0.069 0.931 22 C -0.182 4.182 23 N -0.557 5.557 24 Si 0.771 3.229 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.211 1.211 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.210 0.790 32 H 0.198 0.802 33 H 0.203 0.797 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.812 -10.889 1.637 20.940 hybrid contribution 0.887 0.388 0.236 0.996 sum -16.925 -10.501 1.872 20.006 Atomic orbital electron populations 1.22304 0.89851 1.06755 1.06283 1.22762 0.93432 0.86179 0.70689 1.90688 1.72890 1.34851 1.37044 1.20083 0.90892 0.95995 1.15507 1.21326 1.02990 0.87193 0.85957 1.20945 0.93143 0.83085 1.22389 1.43649 1.01099 1.03022 0.96793 1.94521 0.95921 1.94377 1.53986 1.94548 1.69759 1.20547 1.54739 1.21266 0.90477 1.01123 0.86711 1.21627 1.03294 0.89181 1.09002 1.19984 0.91472 0.86170 0.84925 1.86351 1.21811 1.27756 1.84113 1.23394 0.75654 0.96895 1.05937 1.19223 0.99098 0.93296 0.88407 0.85827 1.29460 0.90211 0.92461 0.94458 1.81002 1.12289 1.10782 1.13866 1.18992 0.85220 0.96894 0.98515 1.21491 0.92395 0.93611 1.50504 0.93126 1.25595 0.97731 0.99968 0.94897 1.69991 1.04358 1.30605 1.50747 0.85705 0.78410 0.80890 0.77945 1.19818 1.19712 1.21070 0.87326 0.87238 0.87762 0.79032 0.80180 0.79741 0.85451 0.88993 0.93094 0.96732 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 10.19 71.24 0.73 -1.34 16 2 C 0.39 8.01 7.22 27.92 0.20 8.22 16 3 O -0.48 -14.82 15.91 17.86 0.28 -14.54 16 4 C -0.22 -4.06 5.88 -20.07 -0.12 -4.18 16 5 C 0.04 0.61 8.94 22.57 0.20 0.81 16 6 C -0.11 -1.78 6.84 36.34 0.25 -1.53 16 7 N 0.04 0.80 4.45 -46.55 -0.21 0.59 16 8 O -0.17 -3.64 18.43 18.88 0.35 -3.29 16 9 O -0.18 -4.09 18.43 18.90 0.35 -3.75 16 10 C 0.02 0.31 9.54 22.32 0.21 0.52 16 11 C -0.21 -3.02 9.03 22.34 0.20 -2.81 16 12 C 0.23 4.55 6.71 22.92 0.15 4.70 16 13 O -0.29 -7.53 7.95 -68.09 -0.54 -8.08 16 14 C 0.06 1.31 4.09 71.98 0.29 1.60 16 15 C 0.02 0.71 2.45 -12.60 -0.03 0.68 16 16 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 17 C 0.25 10.14 13.71 89.44 1.23 11.37 16 18 N -0.50 -22.61 18.54 20.00 0.37 -22.23 16 19 C 0.04 1.75 4.42 29.85 0.13 1.88 16 20 C -0.54 -27.33 8.60 25.60 0.22 -27.11 16 21 H 0.05 2.59 7.59 -2.92 -0.02 2.57 16 22 C 0.02 0.93 5.46 84.66 0.46 1.39 16 23 N -0.92 -49.71 13.29 21.45 0.28 -49.42 16 24 Si 0.94 42.14 29.54 68.60 2.03 44.16 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 28 H 0.11 0.50 5.60 -2.39 -0.01 0.49 16 29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.19 1.56 5.46 -2.91 -0.02 1.54 16 32 H 0.18 1.69 7.59 -2.91 -0.02 1.67 16 33 H 0.19 1.79 6.30 -2.91 -0.02 1.77 16 34 H 0.13 2.10 7.66 -2.39 -0.02 2.08 16 35 H 0.09 1.89 7.66 -2.39 -0.02 1.88 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -71.45 347.80 8.17 -63.28 By element: Atomic # 1 Polarization: -2.05 SS G_CDS: 1.12 Total: -0.93 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.13 Total: -5.80 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: 0.45 Total: -71.07 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: 0.44 Total: -29.65 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -71.45 8.17 -63.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340162353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.906 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds