Wall clock time and date at job start Tue Mar 31 2020 11:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00439 * 2 1 4 4 O 1.20828 * 119.99761 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00401 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47091 * 179.97438 * 5 3 2 7 7 C 1.36941 * 119.99761 * 269.36341 * 6 5 3 8 8 H 1.07995 * 119.99747 * 189.12359 * 7 6 5 9 9 C 1.38818 * 119.99879 * 9.12115 * 7 6 5 10 10 N 1.31621 * 119.99985 * 24.73635 * 9 7 6 11 11 Si 1.86797 * 119.99642 * 204.74222 * 9 7 6 12 12 H 1.48496 * 109.47203 * 90.00254 * 11 9 7 13 13 H 1.48509 * 109.46767 * 209.99955 * 11 9 7 14 14 H 1.48500 * 109.47198 * 329.99615 * 11 9 7 15 15 C 1.46494 * 120.00061 * 89.36834 * 6 5 3 16 16 C 1.50702 * 109.47245 * 269.99548 * 15 6 5 17 17 C 1.38222 * 119.61800 * 95.00016 * 16 15 6 18 18 C 1.38629 * 119.16140 * 179.97438 * 17 16 15 19 19 C 1.38674 * 118.42217 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.42050 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47204 * 90.00035 * 20 19 18 22 22 F 1.39900 * 109.47212 * 210.00037 * 20 19 18 23 23 F 1.39899 * 109.47184 * 329.99818 * 20 19 18 24 24 C 1.38185 * 119.16279 * 0.02562 * 19 18 17 25 25 N 1.31861 * 119.61941 * 274.72967 * 16 15 6 26 26 H 1.08993 * 109.46756 * 60.00333 * 1 2 3 27 27 H 1.08991 * 109.46853 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47015 * 300.00968 * 1 2 3 29 29 H 1.08999 * 109.47009 * 59.98762 * 5 3 2 30 30 H 1.09001 * 109.46687 * 299.99255 * 5 3 2 31 31 H 0.96993 * 119.99549 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.47101 * 149.99967 * 15 6 5 33 33 H 1.08998 * 109.47727 * 29.99733 * 15 6 5 34 34 H 1.08003 * 120.41961 * 359.95829 * 17 16 15 35 35 H 1.08001 * 120.79059 * 180.02562 * 18 17 16 36 36 H 1.07993 * 119.61749 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.1881 3.3322 -1.1872 8 1 4.6337 4.3159 -1.1919 9 6 3.8246 2.7291 -2.3835 10 7 2.8822 1.8103 -2.3976 11 14 4.6730 3.2214 -3.9732 12 1 5.8626 2.3588 -4.1871 13 1 3.7307 3.0557 -5.1090 14 1 5.0999 4.6412 -3.8874 15 6 4.1766 3.3863 1.2673 16 6 2.8809 4.0316 1.6869 17 6 2.0401 3.3697 2.5618 18 6 0.8509 3.9723 2.9420 19 6 0.5508 5.2240 2.4260 20 6 -0.7295 5.9204 2.8094 21 9 -0.5114 6.7037 3.9478 22 9 -1.1497 6.7377 1.7545 23 9 -1.7158 4.9664 3.0816 24 6 1.4404 5.8246 1.5557 25 7 2.5650 5.2234 1.2194 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 3.9558 0.7806 -0.8907 30 1 3.9564 0.7806 0.8892 31 1 2.6285 1.3887 -3.2335 32 1 4.9407 4.1535 1.1421 33 1 4.4945 2.6784 2.0327 34 1 2.3061 2.3954 2.9443 35 1 0.1747 3.4790 3.6245 36 1 1.2142 6.7994 1.1498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341886505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:36 Heat of formation + Delta-G solvation = -164.334439 kcal Electronic energy + Delta-G solvation = -27845.361443 eV Core-core repulsion = 23302.366806 eV Total energy + Delta-G solvation = -4542.994636 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.01546 -47.52791 -47.49166 -39.86263 -38.95516 -36.18835 -34.66408 -32.87555 -32.01688 -30.85837 -28.50915 -27.13737 -26.05581 -24.85935 -23.31922 -22.42503 -21.05094 -19.81412 -18.36273 -18.30407 -18.17188 -17.10189 -16.42655 -15.96825 -15.76678 -15.49441 -15.13300 -14.74874 -14.38636 -14.29520 -14.13359 -13.93833 -13.89951 -13.69561 -13.65390 -13.49609 -13.05455 -12.80515 -12.71321 -12.25934 -12.20865 -11.62282 -11.46613 -11.16066 -11.05701 -10.90957 -10.57276 -10.22168 -10.07811 -9.71166 -9.56610 -9.30928 -9.00954 -8.74215 -8.57530 -7.32117 -6.07508 -3.31303 1.20127 1.65326 2.83469 3.31021 3.38526 3.40470 3.77999 3.90126 3.94399 4.01852 4.19688 4.40284 4.61874 4.79554 5.02093 5.09589 5.20629 5.31179 5.44085 5.74273 5.79590 5.81436 5.86967 6.00776 6.03870 6.15911 6.25321 6.33523 6.46990 6.59047 6.93160 6.99202 7.60527 7.71627 7.97343 8.46493 8.86804 9.29456 9.53315 9.91594 11.02945 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.004963 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.151070 B = 5640.715462 C = 6330.803193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.383 6.383 3 C 0.461 3.539 4 O -0.498 6.498 5 C 0.181 3.819 6 N -0.547 5.547 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.000 4.000 10 N -0.899 5.899 11 Si 0.916 3.084 12 H -0.285 1.285 13 H -0.293 1.293 14 H -0.277 1.277 15 C 0.177 3.823 16 C 0.170 3.830 17 C -0.164 4.164 18 C -0.026 4.026 19 C -0.268 4.268 20 C 0.518 3.482 21 F -0.183 7.183 22 F -0.178 7.178 23 F -0.181 7.181 24 C 0.158 3.842 25 N -0.462 5.462 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.260 0.740 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 0.419 10.903 11.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.300 6.300 3 C 0.301 3.699 4 O -0.382 6.382 5 C 0.052 3.948 6 N -0.263 5.263 7 C -0.371 4.371 8 H 0.108 0.892 9 C -0.198 4.198 10 N -0.543 5.543 11 Si 0.746 3.254 12 H -0.212 1.212 13 H -0.220 1.220 14 H -0.202 1.202 15 C 0.050 3.950 16 C 0.029 3.971 17 C -0.185 4.185 18 C -0.052 4.052 19 C -0.272 4.272 20 C 0.463 3.537 21 F -0.164 7.164 22 F -0.160 7.160 23 F -0.163 7.163 24 C -0.001 4.001 25 N -0.170 5.170 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.137 0.863 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.417 1.055 10.140 10.477 hybrid contribution -1.506 -0.028 -0.520 1.593 sum -3.923 1.027 9.620 10.439 Atomic orbital electron populations 1.22825 0.79827 1.01230 1.01166 1.86537 1.20918 1.36784 1.85798 1.25427 0.93436 0.80365 0.70676 1.90511 1.66477 1.36203 1.45041 1.20709 0.85780 0.86278 1.02042 1.44826 1.73467 1.06617 1.01424 1.19504 1.32853 1.02563 0.82143 0.89221 1.24865 0.97138 0.99423 0.98379 1.69842 1.27276 1.30406 1.26743 0.86047 0.78881 0.78343 0.82162 1.21154 1.21959 1.20248 1.20304 0.90912 0.95175 0.88624 1.22937 0.99328 0.88493 0.86303 1.21755 0.95222 1.01010 1.00498 1.21072 0.95858 0.92233 0.96021 1.20731 0.97304 0.99768 1.09410 1.18187 0.84518 0.76637 0.74340 1.93193 1.94869 1.76025 1.52314 1.93178 1.91359 1.74071 1.57373 1.93162 1.64989 1.64267 1.93861 1.22470 0.88435 0.98730 0.90480 1.67735 1.17211 1.10748 1.21352 0.92960 0.90194 0.93762 0.86306 0.92641 0.93004 0.90295 0.91546 0.85322 0.85052 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -7.95 10.56 -39.24 -0.41 -8.37 16 3 C 0.46 10.51 5.98 36.01 0.22 10.73 16 4 O -0.50 -12.72 13.34 -18.75 -0.25 -12.97 16 5 C 0.18 3.87 5.58 -5.19 -0.03 3.84 16 6 N -0.55 -12.21 2.08 -175.99 -0.37 -12.57 16 7 C -0.24 -6.11 9.70 -15.06 -0.15 -6.26 16 8 H 0.09 2.29 7.93 -52.49 -0.42 1.87 16 9 C 0.00 0.01 4.89 -17.43 -0.09 -0.08 16 10 N -0.90 -24.32 9.00 55.49 0.50 -23.82 16 11 Si 0.92 20.96 29.62 -169.99 -5.04 15.92 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 15 C 0.18 3.28 6.02 -5.20 -0.03 3.25 16 16 C 0.17 3.27 5.20 -82.58 -0.43 2.84 16 17 C -0.16 -2.80 8.38 -39.44 -0.33 -3.13 16 18 C -0.03 -0.42 9.52 -39.28 -0.37 -0.80 16 19 C -0.27 -4.48 5.46 -104.48 -0.57 -5.05 16 20 C 0.52 7.83 3.38 36.00 0.12 7.95 16 21 F -0.18 -2.60 17.30 2.25 0.04 -2.56 16 22 F -0.18 -2.76 16.49 2.25 0.04 -2.72 16 23 F -0.18 -2.74 16.53 2.25 0.04 -2.70 16 24 C 0.16 2.87 10.56 -17.55 -0.19 2.68 16 25 N -0.46 -9.43 10.27 -9.47 -0.10 -9.52 16 26 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.12 2.78 6.29 -51.93 -0.33 2.45 16 30 H 0.06 0.97 7.90 -51.93 -0.41 0.56 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 33 H 0.07 0.99 7.80 -51.93 -0.41 0.59 16 34 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 35 H 0.13 1.78 7.69 -52.49 -0.40 1.37 16 36 H 0.15 2.42 7.61 -52.49 -0.40 2.02 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -30.44 325.78 -5.02 -35.46 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -3.60 Total: 1.12 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: -0.78 Total: 17.82 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.04 Total: -45.91 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.66 Total: -21.33 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.04 Total: 15.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.44 -5.02 -35.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341886505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.876 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds