Wall clock time and date at job start Tue Mar 31 2020 11:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00439 * 2 1 4 4 O 1.20828 * 119.99761 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00401 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47091 * 179.97438 * 5 3 2 7 7 C 1.36941 * 119.99761 * 269.36341 * 6 5 3 8 8 H 1.07995 * 119.99747 * 189.12359 * 7 6 5 9 9 C 1.38818 * 119.99879 * 9.12115 * 7 6 5 10 10 N 1.31621 * 119.99985 * 24.73635 * 9 7 6 11 11 Si 1.86797 * 119.99642 * 204.74222 * 9 7 6 12 12 H 1.48496 * 109.47203 * 90.00254 * 11 9 7 13 13 H 1.48509 * 109.46767 * 209.99955 * 11 9 7 14 14 H 1.48500 * 109.47198 * 329.99615 * 11 9 7 15 15 C 1.46494 * 120.00061 * 89.36834 * 6 5 3 16 16 C 1.50702 * 109.47245 * 269.99548 * 15 6 5 17 17 C 1.38222 * 119.61800 * 95.00016 * 16 15 6 18 18 C 1.38629 * 119.16140 * 179.97438 * 17 16 15 19 19 C 1.38674 * 118.42217 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.42050 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47204 * 90.00035 * 20 19 18 22 22 F 1.39900 * 109.47212 * 210.00037 * 20 19 18 23 23 F 1.39899 * 109.47184 * 329.99818 * 20 19 18 24 24 C 1.38185 * 119.16279 * 0.02562 * 19 18 17 25 25 N 1.31861 * 119.61941 * 274.72967 * 16 15 6 26 26 H 1.08993 * 109.46756 * 60.00333 * 1 2 3 27 27 H 1.08991 * 109.46853 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47015 * 300.00968 * 1 2 3 29 29 H 1.08999 * 109.47009 * 59.98762 * 5 3 2 30 30 H 1.09001 * 109.46687 * 299.99255 * 5 3 2 31 31 H 0.96993 * 119.99549 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.47101 * 149.99967 * 15 6 5 33 33 H 1.08998 * 109.47727 * 29.99733 * 15 6 5 34 34 H 1.08003 * 120.41961 * 359.95829 * 17 16 15 35 35 H 1.08001 * 120.79059 * 180.02562 * 18 17 16 36 36 H 1.07993 * 119.61749 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.1881 3.3322 -1.1872 8 1 4.6337 4.3159 -1.1919 9 6 3.8246 2.7291 -2.3835 10 7 2.8822 1.8103 -2.3976 11 14 4.6730 3.2214 -3.9732 12 1 5.8626 2.3588 -4.1871 13 1 3.7307 3.0557 -5.1090 14 1 5.0999 4.6412 -3.8874 15 6 4.1766 3.3863 1.2673 16 6 2.8809 4.0316 1.6869 17 6 2.0401 3.3697 2.5618 18 6 0.8509 3.9723 2.9420 19 6 0.5508 5.2240 2.4260 20 6 -0.7295 5.9204 2.8094 21 9 -0.5114 6.7037 3.9478 22 9 -1.1497 6.7377 1.7545 23 9 -1.7158 4.9664 3.0816 24 6 1.4404 5.8246 1.5557 25 7 2.5650 5.2234 1.2194 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 3.9558 0.7806 -0.8907 30 1 3.9564 0.7806 0.8892 31 1 2.6285 1.3887 -3.2335 32 1 4.9407 4.1535 1.1421 33 1 4.4945 2.6784 2.0327 34 1 2.3061 2.3954 2.9443 35 1 0.1747 3.4790 3.6245 36 1 1.2142 6.7994 1.1498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341886505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:36 Heat of formation + Delta-G solvation = -181.455692 kcal Electronic energy + Delta-G solvation = -27846.103876 eV Core-core repulsion = 23302.366806 eV Total energy + Delta-G solvation = -4543.737070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.23035 -48.75226 -48.68595 -41.27547 -40.60766 -37.81714 -36.37865 -34.38395 -33.51604 -32.46088 -30.06380 -28.63047 -27.64412 -26.28770 -24.73809 -23.94922 -22.50339 -21.49107 -19.57023 -19.54690 -19.42697 -18.86524 -18.07342 -17.48540 -17.31611 -16.99300 -16.70674 -16.43557 -15.67907 -15.53908 -15.52631 -15.40208 -15.14722 -15.12731 -14.90322 -14.85763 -14.54257 -14.17843 -14.12816 -13.86229 -13.62528 -13.39260 -12.83629 -12.78926 -12.65071 -12.52697 -12.23048 -12.01366 -11.92938 -11.33212 -11.04115 -10.95533 -10.53905 -10.40640 -10.06471 -9.08882 -7.98239 -5.23327 -0.14925 0.31488 1.48652 1.51111 1.58129 1.58570 2.08765 2.35497 2.53764 2.63966 2.69496 2.95846 3.23262 3.37554 3.48824 3.64999 3.78585 3.84732 4.13679 4.39839 4.44596 4.47007 4.52543 4.58782 4.69297 4.70836 4.88121 4.97316 4.99893 5.12717 5.23693 5.63943 5.68155 6.03272 6.17687 6.98883 7.08910 7.55945 7.78052 8.08967 9.09924 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.004963 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.151070 B = 5640.715462 C = 6330.803193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.387 6.387 3 C 0.464 3.536 4 O -0.530 6.530 5 C 0.181 3.819 6 N -0.561 5.561 7 C -0.240 4.240 8 H 0.078 0.922 9 C -0.047 4.047 10 N -0.924 5.924 11 Si 0.966 3.034 12 H -0.277 1.277 13 H -0.308 1.308 14 H -0.278 1.278 15 C 0.175 3.825 16 C 0.154 3.846 17 C -0.162 4.162 18 C -0.027 4.027 19 C -0.265 4.265 20 C 0.527 3.473 21 F -0.175 7.175 22 F -0.181 7.181 23 F -0.178 7.178 24 C 0.140 3.860 25 N -0.496 5.496 26 H 0.027 0.973 27 H 0.122 0.878 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.248 0.752 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 -0.260 12.861 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.304 6.304 3 C 0.305 3.695 4 O -0.417 6.417 5 C 0.052 3.948 6 N -0.278 5.278 7 C -0.370 4.370 8 H 0.096 0.904 9 C -0.242 4.242 10 N -0.570 5.570 11 Si 0.796 3.204 12 H -0.203 1.203 13 H -0.236 1.236 14 H -0.203 1.203 15 C 0.048 3.952 16 C 0.014 3.986 17 C -0.182 4.182 18 C -0.052 4.052 19 C -0.269 4.269 20 C 0.472 3.528 21 F -0.156 7.156 22 F -0.162 7.162 23 F -0.160 7.160 24 C -0.018 4.018 25 N -0.205 5.205 26 H 0.046 0.954 27 H 0.140 0.860 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.775 0.389 12.140 12.459 hybrid contribution -1.458 0.241 -0.943 1.753 sum -4.233 0.630 11.197 11.987 Atomic orbital electron populations 1.23054 0.77957 1.03759 1.00328 1.86504 1.22736 1.35803 1.85365 1.25622 0.93940 0.80269 0.69635 1.90489 1.67294 1.37285 1.46661 1.20693 0.85179 0.86024 1.02913 1.44666 1.74201 1.07227 1.01725 1.19525 1.32007 1.01790 0.83656 0.90399 1.25374 0.98061 1.00276 1.00448 1.69986 1.28821 1.32080 1.26146 0.85276 0.77902 0.77962 0.79296 1.20342 1.23586 1.20307 1.20478 0.90669 0.95927 0.88088 1.23023 0.99461 0.88743 0.87381 1.22028 0.94904 1.01673 0.99598 1.21480 0.96034 0.91852 0.95878 1.20927 0.97454 1.00098 1.08465 1.17913 0.83882 0.76565 0.74435 1.93211 1.94812 1.75770 1.51811 1.93179 1.91316 1.74105 1.57619 1.93171 1.64759 1.64203 1.93826 1.22728 0.88527 0.99449 0.91144 1.67679 1.18556 1.11916 1.22378 0.95405 0.86011 0.92964 0.88672 0.88267 0.94245 0.90618 0.87494 0.82789 0.82075 0.81778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 10.56 113.37 1.20 2.63 16 2 O -0.39 -15.46 10.56 -51.37 -0.54 -16.01 16 3 C 0.46 20.65 5.98 71.24 0.43 21.07 16 4 O -0.53 -26.75 13.34 21.96 0.29 -26.45 16 5 C 0.18 7.50 5.58 85.63 0.48 7.98 16 6 N -0.56 -24.58 2.08 -710.69 -1.48 -26.06 16 7 C -0.24 -12.23 9.70 84.03 0.82 -11.41 16 8 H 0.08 4.05 7.93 -2.91 -0.02 4.03 16 9 C -0.05 -2.46 4.89 84.86 0.42 -2.05 16 10 N -0.92 -50.99 9.00 21.65 0.19 -50.79 16 11 Si 0.97 44.07 29.62 68.60 2.03 46.10 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 13 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 15 C 0.17 6.18 6.02 85.63 0.52 6.70 16 16 C 0.15 5.69 5.20 42.55 0.22 5.91 16 17 C -0.16 -5.08 8.38 22.36 0.19 -4.89 16 18 C -0.03 -0.80 9.52 22.47 0.21 -0.58 16 19 C -0.27 -8.38 5.46 -19.77 -0.11 -8.49 16 20 C 0.53 14.81 3.38 71.24 0.24 15.05 16 21 F -0.17 -4.57 17.30 44.97 0.78 -3.80 16 22 F -0.18 -5.32 16.49 44.97 0.74 -4.58 16 23 F -0.18 -4.92 16.53 44.97 0.74 -4.18 16 24 C 0.14 4.97 10.56 84.67 0.89 5.87 16 25 N -0.50 -20.03 10.27 -183.89 -1.89 -21.92 16 26 H 0.03 1.04 8.13 -2.39 -0.02 1.02 16 27 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 29 H 0.10 4.45 6.29 -2.39 -0.02 4.43 16 30 H 0.10 3.16 7.90 -2.39 -0.02 3.14 16 31 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 32 H 0.08 2.68 8.03 -2.39 -0.02 2.66 16 33 H 0.11 2.84 7.80 -2.39 -0.02 2.82 16 34 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.16 3.73 7.69 -2.91 -0.02 3.70 16 36 H 0.17 5.17 7.61 -2.91 -0.02 5.14 16 Total: -1.00 -66.17 325.78 7.50 -58.68 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.13 Total: 11.23 kcal Atomic # 6 Polarization: 32.29 SS G_CDS: 5.50 Total: 37.78 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -3.17 Total: -98.78 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.25 Total: -42.46 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 2.26 Total: -12.55 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.17 7.50 -58.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341886505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.778 kcal (2) G-P(sol) polarization free energy of solvation -66.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds