Wall clock time and date at job start Tue Mar 31 2020 11:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46972 * 2 1 4 4 C 1.36828 * 120.00078 * 262.29630 * 3 2 1 5 5 H 1.08000 * 119.99966 * 196.06485 * 4 3 2 6 6 C 1.39069 * 120.00143 * 16.05734 * 4 3 2 7 7 N 1.31348 * 119.99970 * 19.84749 * 6 4 3 8 8 Si 1.86802 * 120.00385 * 199.84732 * 6 4 3 9 9 H 1.48506 * 109.46692 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47263 * 120.00032 * 8 6 4 11 11 H 1.48493 * 109.47674 * 240.00394 * 8 6 4 12 12 C 1.34773 * 120.00148 * 82.29435 * 3 2 1 13 13 O 1.21592 * 120.00201 * 182.32825 * 12 3 2 14 14 C 1.47786 * 119.99841 * 2.32914 * 12 3 2 15 15 C 1.39558 * 119.66670 * 172.68942 * 14 12 3 16 16 C 1.38284 * 119.12788 * 179.97438 * 15 14 12 17 17 C 1.39263 * 118.45465 * 359.97438 * 16 15 14 18 18 O 1.35724 * 120.37524 * 180.02562 * 17 16 15 19 19 C 1.42899 * 116.99992 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47043 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47451 * 59.99796 * 20 19 18 22 22 F 1.39900 * 109.47056 * 179.97438 * 20 19 18 23 23 F 1.39905 * 109.47176 * 299.99549 * 20 19 18 24 24 C 1.39230 * 119.25002 * 0.02562 * 17 16 15 25 25 N 1.31394 * 120.81535 * 0.02562 * 24 17 16 26 26 H 1.09005 * 109.47093 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47140 * 299.99389 * 1 2 3 28 28 H 1.08992 * 109.47190 * 60.00066 * 1 2 3 29 29 H 1.09011 * 109.46878 * 240.00346 * 2 1 3 30 30 H 1.08995 * 109.47500 * 120.00357 * 2 1 3 31 31 H 0.97004 * 120.00050 * 179.97438 * 7 6 4 32 32 H 1.07995 * 120.43483 * 0.27243 * 15 14 12 33 33 H 1.07993 * 120.77290 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.47005 * 299.99891 * 19 18 17 35 35 H 1.08995 * 109.47370 * 60.00314 * 19 18 17 36 36 H 1.07998 * 119.59139 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3961 1.9733 -1.1743 5 1 2.9897 2.8754 -1.1576 6 6 2.0159 1.4134 -2.3892 7 7 1.0037 0.5778 -2.4391 8 14 2.9447 1.8496 -3.9501 9 1 4.0352 2.8044 -3.6267 10 1 3.5255 0.6173 -4.5413 11 1 2.0124 2.4734 -4.9231 12 6 2.0954 2.0687 1.1566 13 8 2.4604 3.2286 1.1513 14 6 1.7363 1.4129 2.4314 15 6 1.9628 2.0771 3.6377 16 6 1.6221 1.4533 4.8239 17 6 1.0624 0.1793 4.7667 18 8 0.7130 -0.4686 5.9069 19 6 0.1455 -1.7723 5.7644 20 6 -0.1825 -2.3396 7.1470 21 9 -1.0983 -1.5002 7.7903 22 9 -0.7386 -3.6158 7.0074 23 9 0.9889 -2.4216 7.9074 24 6 0.8654 -0.4222 3.5265 25 7 1.2010 0.1970 2.4172 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.7383 0.1876 -3.2866 32 1 2.3941 3.0671 3.6445 33 1 1.7854 1.9429 5.7724 34 1 -0.7674 -1.7085 5.1723 35 1 0.8589 -2.4263 5.2629 36 1 0.4314 -1.4098 3.4757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345726460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:27 Heat of formation + Delta-G solvation = -150.508581 kcal Electronic energy + Delta-G solvation = -26640.280553 eV Core-core repulsion = 22097.885451 eV Total energy + Delta-G solvation = -4542.395102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.48376 -48.04024 -47.93136 -40.71167 -39.00970 -37.45024 -35.15927 -32.67745 -31.67633 -30.89499 -29.65617 -29.22845 -25.44726 -24.51147 -23.56247 -22.60174 -22.01539 -19.87453 -19.28510 -19.01861 -18.29928 -17.92451 -17.06279 -16.51022 -16.22355 -16.06058 -15.11845 -14.88244 -14.78141 -14.54984 -14.39262 -14.18938 -14.11930 -14.10023 -14.09698 -13.59280 -13.40605 -13.27642 -13.03004 -12.48091 -12.09641 -12.07518 -11.85739 -11.73151 -11.18713 -11.12159 -10.72156 -10.39433 -10.20829 -9.96708 -9.45742 -9.12290 -8.86985 -8.43680 -8.29656 -7.70560 -6.44739 -3.88609 1.04798 1.40728 1.89278 2.71324 3.06620 3.19099 3.26196 3.31557 3.50209 3.57372 3.96788 4.00836 4.38549 4.42362 4.52447 4.56494 4.68895 4.76886 5.09939 5.10393 5.35251 5.57229 5.82506 5.93823 6.27174 6.49919 6.60792 6.81983 6.89728 6.95111 7.14209 7.33573 7.42645 7.88595 7.99353 8.10698 8.45818 9.07745 9.32331 9.94254 10.48929 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.002972 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.088415 B = 9417.857969 C =10131.987604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.121 3.879 3 N -0.399 5.399 4 C -0.299 4.299 5 H 0.107 0.893 6 C 0.032 3.968 7 N -0.846 5.846 8 Si 0.927 3.073 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.464 3.536 13 O -0.599 6.599 14 C 0.088 3.912 15 C -0.091 4.091 16 C -0.104 4.104 17 C 0.057 3.943 18 O -0.298 6.298 19 C 0.011 3.989 20 C 0.466 3.534 21 F -0.174 7.174 22 F -0.172 7.172 23 F -0.174 7.174 24 C 0.015 3.985 25 N -0.412 5.412 26 H 0.030 0.970 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.270 0.730 32 H 0.152 0.848 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 -8.844 14.610 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.002 4.002 3 N -0.112 5.112 4 C -0.428 4.428 5 H 0.125 0.875 6 C -0.174 4.174 7 N -0.483 5.483 8 Si 0.753 3.247 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.206 1.206 12 C 0.253 3.747 13 O -0.486 6.486 14 C -0.051 4.051 15 C -0.112 4.112 16 C -0.130 4.130 17 C 0.010 3.990 18 O -0.211 6.211 19 C -0.066 4.066 20 C 0.412 3.588 21 F -0.155 7.155 22 F -0.153 7.153 23 F -0.155 7.155 24 C -0.145 4.145 25 N -0.125 5.125 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.074 -8.764 13.839 16.667 hybrid contribution 0.158 0.030 0.172 0.236 sum -2.916 -8.734 14.011 16.766 Atomic orbital electron populations 1.21968 0.96348 0.99224 1.01453 1.21752 0.95149 0.82418 1.00849 1.43858 1.50358 1.11588 1.05432 1.19952 1.29765 1.10995 0.82044 0.87514 1.25431 0.95480 0.96792 0.99681 1.70105 1.21934 1.29377 1.26925 0.85854 0.79753 0.78579 0.80524 1.18965 1.20398 1.20574 1.17308 0.88378 0.86225 0.82759 1.90609 1.55599 1.16491 1.85932 1.21741 0.97468 0.90330 0.95528 1.21937 0.97462 1.01301 0.90507 1.20781 1.00336 0.92272 0.99647 1.20069 0.99790 0.93758 0.85416 1.85936 1.77255 1.27871 1.30054 1.23801 1.03163 0.86616 0.93020 1.19997 0.74957 0.76110 0.87756 1.93237 1.67389 1.71075 1.83812 1.93232 1.85740 1.40453 1.95919 1.93238 1.47911 1.96034 1.78347 1.23056 1.03031 1.01200 0.87215 1.68465 1.08060 1.08375 1.27601 0.95138 0.95431 0.89538 0.90376 0.90975 0.91930 0.83040 0.83963 0.87061 0.87077 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.02 37.16 0.34 -2.53 16 2 C 0.12 2.78 4.86 -4.04 -0.02 2.76 16 3 N -0.40 -10.28 2.64 -115.91 -0.31 -10.59 16 4 C -0.30 -8.12 9.35 -15.01 -0.14 -8.26 16 5 H 0.11 3.03 7.37 -52.49 -0.39 2.65 16 6 C 0.03 0.81 4.93 -17.45 -0.09 0.72 16 7 N -0.85 -21.09 8.43 55.50 0.47 -20.63 16 8 Si 0.93 19.65 29.60 -169.99 -5.03 14.62 16 9 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 10 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 C 0.46 11.71 7.53 -12.36 -0.09 11.61 16 13 O -0.60 -16.70 15.98 5.29 0.08 -16.61 16 14 C 0.09 1.79 6.49 -83.03 -0.54 1.25 16 15 C -0.09 -1.54 9.62 -39.07 -0.38 -1.92 16 16 C -0.10 -1.45 10.12 -39.18 -0.40 -1.84 16 17 C 0.06 0.75 6.72 -38.83 -0.26 0.49 16 18 O -0.30 -3.39 10.03 -18.88 -0.19 -3.57 16 19 C 0.01 0.09 4.70 37.16 0.17 0.27 16 20 C 0.47 4.04 3.32 37.16 0.12 4.16 16 21 F -0.17 -1.75 17.26 2.25 0.04 -1.71 16 22 F -0.17 -1.42 17.32 2.25 0.04 -1.38 16 23 F -0.17 -1.74 17.26 2.25 0.04 -1.70 16 24 C 0.01 0.21 10.21 -17.37 -0.18 0.03 16 25 N -0.41 -7.50 4.18 -9.68 -0.04 -7.54 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.59 6.57 -51.93 -0.34 0.25 16 28 H 0.09 2.12 5.99 -51.93 -0.31 1.81 16 29 H 0.08 1.89 6.14 -51.92 -0.32 1.57 16 30 H 0.07 1.53 5.37 -51.94 -0.28 1.25 16 31 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 32 H 0.15 2.52 7.65 -52.49 -0.40 2.12 16 33 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.11 0.69 7.67 -51.93 -0.40 0.29 16 35 H 0.11 0.67 7.67 -51.93 -0.40 0.27 16 36 H 0.15 1.60 6.31 -52.49 -0.33 1.27 16 LS Contribution 316.13 15.07 4.76 4.76 Total: -1.00 -30.28 316.13 -4.73 -35.01 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -3.15 Total: 2.61 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.46 Total: 6.73 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.12 Total: -38.76 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.10 Total: -20.19 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.12 Total: -4.79 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.28 -4.73 -35.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345726460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.495 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds