Wall clock time and date at job start Tue Mar 31 2020 11:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46972 * 2 1 4 4 C 1.36828 * 120.00078 * 262.29630 * 3 2 1 5 5 H 1.08000 * 119.99966 * 196.06485 * 4 3 2 6 6 C 1.39069 * 120.00143 * 16.05734 * 4 3 2 7 7 N 1.31348 * 119.99970 * 19.84749 * 6 4 3 8 8 Si 1.86802 * 120.00385 * 199.84732 * 6 4 3 9 9 H 1.48506 * 109.46692 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47263 * 120.00032 * 8 6 4 11 11 H 1.48493 * 109.47674 * 240.00394 * 8 6 4 12 12 C 1.34773 * 120.00148 * 82.29435 * 3 2 1 13 13 O 1.21592 * 120.00201 * 182.32825 * 12 3 2 14 14 C 1.47786 * 119.99841 * 2.32914 * 12 3 2 15 15 C 1.39558 * 119.66670 * 172.68942 * 14 12 3 16 16 C 1.38284 * 119.12788 * 179.97438 * 15 14 12 17 17 C 1.39263 * 118.45465 * 359.97438 * 16 15 14 18 18 O 1.35724 * 120.37524 * 180.02562 * 17 16 15 19 19 C 1.42899 * 116.99992 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47043 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47451 * 59.99796 * 20 19 18 22 22 F 1.39900 * 109.47056 * 179.97438 * 20 19 18 23 23 F 1.39905 * 109.47176 * 299.99549 * 20 19 18 24 24 C 1.39230 * 119.25002 * 0.02562 * 17 16 15 25 25 N 1.31394 * 120.81535 * 0.02562 * 24 17 16 26 26 H 1.09005 * 109.47093 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47140 * 299.99389 * 1 2 3 28 28 H 1.08992 * 109.47190 * 60.00066 * 1 2 3 29 29 H 1.09011 * 109.46878 * 240.00346 * 2 1 3 30 30 H 1.08995 * 109.47500 * 120.00357 * 2 1 3 31 31 H 0.97004 * 120.00050 * 179.97438 * 7 6 4 32 32 H 1.07995 * 120.43483 * 0.27243 * 15 14 12 33 33 H 1.07993 * 120.77290 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.47005 * 299.99891 * 19 18 17 35 35 H 1.08995 * 109.47370 * 60.00314 * 19 18 17 36 36 H 1.07998 * 119.59139 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3961 1.9733 -1.1743 5 1 2.9897 2.8754 -1.1576 6 6 2.0159 1.4134 -2.3892 7 7 1.0037 0.5778 -2.4391 8 14 2.9447 1.8496 -3.9501 9 1 4.0352 2.8044 -3.6267 10 1 3.5255 0.6173 -4.5413 11 1 2.0124 2.4734 -4.9231 12 6 2.0954 2.0687 1.1566 13 8 2.4604 3.2286 1.1513 14 6 1.7363 1.4129 2.4314 15 6 1.9628 2.0771 3.6377 16 6 1.6221 1.4533 4.8239 17 6 1.0624 0.1793 4.7667 18 8 0.7130 -0.4686 5.9069 19 6 0.1455 -1.7723 5.7644 20 6 -0.1825 -2.3396 7.1470 21 9 -1.0983 -1.5002 7.7903 22 9 -0.7386 -3.6158 7.0074 23 9 0.9889 -2.4216 7.9074 24 6 0.8654 -0.4222 3.5265 25 7 1.2010 0.1970 2.4172 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.7383 0.1876 -3.2866 32 1 2.3941 3.0671 3.6445 33 1 1.7854 1.9429 5.7724 34 1 -0.7674 -1.7085 5.1723 35 1 0.8589 -2.4263 5.2629 36 1 0.4314 -1.4098 3.4757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345726460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:26 Heat of formation + Delta-G solvation = -168.747631 kcal Electronic energy + Delta-G solvation = -26641.071458 eV Core-core repulsion = 22097.885451 eV Total energy + Delta-G solvation = -4543.186007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.16999 -48.71262 -48.65341 -41.95006 -40.45231 -38.89007 -37.07688 -34.14851 -33.29640 -31.98074 -31.15410 -30.57926 -27.22478 -25.44669 -24.99585 -23.80499 -23.58636 -21.50251 -20.11266 -19.70798 -19.21631 -18.90254 -18.71716 -18.17933 -17.31241 -17.06937 -16.80674 -15.99160 -15.88521 -15.75719 -15.54897 -15.47670 -15.08636 -14.98251 -14.81525 -14.80206 -14.79028 -14.61593 -14.41789 -14.04481 -13.71979 -13.32928 -13.01450 -12.86672 -12.80984 -12.70357 -12.56136 -12.14409 -12.01093 -11.58904 -10.93027 -10.74073 -10.68327 -10.09208 -9.59547 -9.53322 -8.31892 -5.90238 -0.25490 0.21099 1.12339 1.37872 1.43732 1.57511 1.94279 1.97884 2.26913 2.65208 2.80199 2.92275 2.97193 3.20234 3.25842 3.41354 3.47341 3.86459 3.95820 3.97497 4.05288 4.26087 4.53143 4.77088 4.79326 5.01278 5.09395 5.16847 5.26938 5.39914 5.40741 5.58851 5.88694 6.03618 6.11827 6.50712 6.82463 7.15654 7.45005 8.04024 8.60515 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.002972 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.088415 B = 9417.857969 C =10131.987604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.129 3.871 3 N -0.417 5.417 4 C -0.351 4.351 5 H 0.075 0.925 6 C 0.006 3.994 7 N -0.858 5.858 8 Si 0.991 3.009 9 H -0.275 1.275 10 H -0.263 1.263 11 H -0.273 1.273 12 C 0.454 3.546 13 O -0.642 6.642 14 C 0.051 3.949 15 C -0.089 4.089 16 C -0.099 4.099 17 C 0.090 3.910 18 O -0.300 6.300 19 C 0.001 3.999 20 C 0.469 3.531 21 F -0.184 7.184 22 F -0.168 7.168 23 F -0.183 7.183 24 C 0.018 3.982 25 N -0.427 5.427 26 H 0.057 0.943 27 H 0.026 0.974 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.277 0.723 32 H 0.145 0.855 33 H 0.175 0.825 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -11.197 16.359 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.007 3.993 3 N -0.131 5.131 4 C -0.479 4.479 5 H 0.093 0.907 6 C -0.199 4.199 7 N -0.494 5.494 8 Si 0.814 3.186 9 H -0.200 1.200 10 H -0.188 1.188 11 H -0.199 1.199 12 C 0.245 3.755 13 O -0.533 6.533 14 C -0.085 4.085 15 C -0.110 4.110 16 C -0.125 4.125 17 C 0.043 3.957 18 O -0.212 6.212 19 C -0.075 4.075 20 C 0.415 3.585 21 F -0.165 7.165 22 F -0.150 7.150 23 F -0.165 7.165 24 C -0.143 4.143 25 N -0.139 5.139 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.192 0.808 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.998 -11.153 15.597 19.587 hybrid contribution 0.326 0.625 -0.010 0.705 sum -3.672 -10.528 15.587 19.165 Atomic orbital electron populations 1.21778 0.95499 1.00369 0.99790 1.21777 0.95689 0.81122 1.00698 1.44033 1.51249 1.12583 1.05261 1.19803 1.32397 1.11828 0.83912 0.90663 1.26106 0.95736 0.96473 1.01601 1.70179 1.21934 1.29454 1.27868 0.84939 0.78248 0.78565 0.76894 1.20006 1.18776 1.19874 1.18140 0.86931 0.86046 0.84397 1.90539 1.57010 1.18546 1.87173 1.21064 1.01317 0.92177 0.93980 1.21891 0.97393 1.01116 0.90634 1.21022 0.99296 0.92623 0.99535 1.20042 0.96768 0.93105 0.85828 1.85940 1.76823 1.29526 1.28911 1.24215 1.05083 0.85175 0.93033 1.20075 0.74466 0.76129 0.87830 1.93225 1.67751 1.71406 1.84132 1.93245 1.85653 1.40204 1.95871 1.93227 1.48419 1.96080 1.78736 1.23679 1.02025 1.02366 0.86256 1.68191 1.08154 1.07632 1.29967 0.92388 0.95512 0.92636 0.92317 0.89075 0.91314 0.83698 0.80796 0.84399 0.84231 0.78535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.02 71.98 0.65 -4.37 16 2 C 0.13 5.99 4.86 86.38 0.42 6.41 16 3 N -0.42 -22.56 2.64 -638.89 -1.69 -24.24 16 4 C -0.35 -20.26 9.35 84.11 0.79 -19.47 16 5 H 0.08 4.66 7.37 -2.91 -0.02 4.64 16 6 C 0.01 0.29 4.93 84.96 0.42 0.71 16 7 N -0.86 -43.61 8.43 21.68 0.18 -43.42 16 8 Si 0.99 41.43 29.60 68.60 2.03 43.46 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 12 C 0.45 24.07 7.53 86.77 0.65 24.72 16 13 O -0.64 -38.21 15.98 -4.00 -0.06 -38.28 16 14 C 0.05 2.09 6.49 41.83 0.27 2.36 16 15 C -0.09 -2.97 9.62 22.60 0.22 -2.75 16 16 C -0.10 -2.43 10.12 22.53 0.23 -2.20 16 17 C 0.09 1.99 6.72 22.76 0.15 2.15 16 18 O -0.30 -5.28 10.03 -90.46 -0.91 -6.19 16 19 C 0.00 0.01 4.70 71.98 0.34 0.35 16 20 C 0.47 6.35 3.32 71.98 0.24 6.59 16 21 F -0.18 -3.12 17.26 44.97 0.78 -2.34 16 22 F -0.17 -2.19 17.32 44.97 0.78 -1.41 16 23 F -0.18 -3.07 17.26 44.97 0.78 -2.30 16 24 C 0.02 0.42 10.21 85.00 0.87 1.29 16 25 N -0.43 -14.73 4.18 -184.54 -0.77 -15.50 16 26 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.03 1.12 6.57 -2.39 -0.02 1.11 16 28 H 0.05 2.76 5.99 -2.39 -0.01 2.74 16 29 H 0.06 2.90 6.14 -2.38 -0.01 2.89 16 30 H 0.09 3.82 5.37 -2.40 -0.01 3.80 16 31 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 32 H 0.15 4.94 7.65 -2.91 -0.02 4.92 16 33 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 34 H 0.14 0.86 7.67 -2.39 -0.02 0.84 16 35 H 0.14 0.81 7.67 -2.39 -0.02 0.79 16 36 H 0.20 2.86 6.31 -2.91 -0.02 2.84 16 Total: -1.00 -71.02 316.13 7.51 -63.51 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.15 Total: 10.91 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 5.24 Total: 15.79 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.27 Total: -83.17 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -0.97 Total: -44.46 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 2.33 Total: -6.05 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -71.02 7.51 -63.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345726460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.239 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds