Wall clock time and date at job start Tue Mar 31 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47172 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47033 * 120.00243 * 9 8 7 12 12 O 1.21291 * 119.99747 * 25.00482 * 11 9 8 13 13 N 1.34771 * 120.00513 * 205.00210 * 11 9 8 14 14 C 1.37100 * 120.00462 * 180.02562 * 13 11 9 15 15 H 1.07998 * 119.99637 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00023 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99741 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00128 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47335 * 90.00068 * 18 16 14 20 20 H 1.48504 * 109.47339 * 210.00139 * 18 16 14 21 21 H 1.48500 * 109.47202 * 329.99833 * 18 16 14 22 22 C 1.52993 * 109.47724 * 240.00558 * 9 8 7 23 23 F 1.39900 * 109.47094 * 60.00164 * 22 9 8 24 24 F 1.39898 * 109.47622 * 179.97438 * 22 9 8 25 25 F 1.39900 * 109.47290 * 300.00392 * 22 9 8 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 29 29 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 30 30 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 31 31 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 33 33 H 1.00901 * 110.99630 * 296.04393 * 10 9 8 34 34 H 1.00904 * 111.00249 * 59.99421 * 10 9 8 35 35 H 0.97008 * 120.00028 * 0.02562 * 13 11 9 36 36 H 0.97000 * 119.99476 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 7 5.6815 0.3680 -0.0005 11 6 3.9332 -0.7856 1.2308 12 8 2.8592 -0.6552 1.7791 13 7 4.8398 -1.6531 1.7226 14 6 4.5480 -2.3885 2.8423 15 1 3.5917 -2.2723 3.3305 16 6 5.4830 -3.2825 3.3495 17 7 5.2035 -3.9870 4.4231 18 14 7.1373 -3.4829 2.5055 19 1 8.1090 -2.5218 3.0863 20 1 7.6312 -4.8688 2.7070 21 1 6.9869 -3.2175 1.0522 22 6 3.9275 -0.7996 -1.2488 23 9 4.2251 -0.0496 -2.3916 24 9 4.6916 -1.9714 -1.2487 25 9 2.5678 -1.1289 -1.2482 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2128 2.3203 -0.0010 30 1 1.3339 4.5114 0.0026 31 1 3.7920 4.6381 -0.0024 32 1 5.1344 2.5754 -0.0023 33 1 5.9354 0.8548 -0.8471 34 1 5.9221 0.9113 0.8150 35 1 5.6989 -1.7572 1.2843 36 1 5.8561 -4.6113 4.7769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359807168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:03 Heat of formation + Delta-G solvation = -193.070880 kcal Electronic energy + Delta-G solvation = -29192.172822 eV Core-core repulsion = 24647.932080 eV Total energy + Delta-G solvation = -4544.240742 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.13366 -48.65466 -48.55282 -41.63490 -40.07528 -38.41244 -36.45237 -36.02437 -33.71934 -31.43200 -31.17841 -29.10576 -28.04899 -27.11590 -24.95455 -23.00430 -22.81241 -21.20668 -20.62320 -19.70721 -19.45303 -19.14014 -18.69045 -17.82071 -17.24049 -16.70718 -16.60377 -16.44204 -16.17753 -15.56807 -15.38359 -15.34697 -15.20999 -15.08468 -15.00070 -14.88130 -14.78200 -14.67830 -14.50692 -14.31979 -14.07984 -13.56342 -13.09781 -12.97027 -12.70975 -12.43444 -12.41473 -12.01292 -11.87366 -11.85428 -11.51051 -10.67862 -10.27211 -10.23324 -9.91860 -9.05142 -8.45290 -6.03482 0.17592 0.52302 1.24543 1.32897 1.43925 1.45924 1.92722 2.20812 2.43361 2.50186 2.68251 2.74786 2.89668 3.07978 3.32861 3.53643 3.58963 3.88743 4.06669 4.09992 4.25953 4.40266 4.42809 4.49105 4.65117 4.71382 4.91674 5.27486 5.38141 5.48575 5.52070 5.58655 5.87151 5.90154 6.18309 6.53534 6.58002 6.82133 7.34465 7.86883 8.71078 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.005803 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.666672 B = 4824.272226 C = 5012.483830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.299 6.299 3 C 0.151 3.849 4 C -0.229 4.229 5 C -0.064 4.064 6 C -0.164 4.164 7 C -0.070 4.070 8 C -0.190 4.190 9 C 0.137 3.863 10 N -0.821 5.821 11 C 0.454 3.546 12 O -0.572 6.572 13 N -0.563 5.563 14 C -0.325 4.325 15 H 0.064 0.936 16 C -0.003 4.003 17 N -0.922 5.922 18 Si 0.949 3.051 19 H -0.248 1.248 20 H -0.270 1.270 21 H -0.244 1.244 22 C 0.463 3.537 23 F -0.172 7.172 24 F -0.182 7.182 25 F -0.159 7.159 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.144 0.856 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.372 0.628 34 H 0.375 0.625 35 H 0.393 0.607 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 15.806 -14.186 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.210 6.210 3 C 0.104 3.896 4 C -0.248 4.248 5 C -0.082 4.082 6 C -0.182 4.182 7 C -0.088 4.088 8 C -0.193 4.193 9 C 0.038 3.962 10 N -0.360 5.360 11 C 0.238 3.762 12 O -0.454 6.454 13 N -0.204 5.204 14 C -0.454 4.454 15 H 0.082 0.918 16 C -0.203 4.203 17 N -0.562 5.562 18 Si 0.769 3.231 19 H -0.172 1.172 20 H -0.195 1.195 21 H -0.168 1.168 22 C 0.408 3.592 23 F -0.153 7.153 24 F -0.163 7.163 25 F -0.141 7.141 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.162 0.838 30 H 0.176 0.824 31 H 0.178 0.822 32 H 0.171 0.829 33 H 0.190 0.810 34 H 0.193 0.807 35 H 0.229 0.771 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.375 14.710 -13.642 20.110 hybrid contribution 0.016 0.044 -0.134 0.141 sum -1.359 14.754 -13.776 20.231 Atomic orbital electron populations 1.23169 0.78502 1.04246 1.01574 1.86570 1.21852 1.25977 1.86622 1.19203 0.92156 0.85924 0.92364 1.21526 1.01024 0.92131 1.10078 1.21442 0.95324 0.97292 0.94150 1.21336 0.93964 0.98757 1.04145 1.21083 1.01287 0.90075 0.96329 1.19387 0.91593 0.94520 1.13846 1.20322 0.91849 0.93302 0.90776 1.58643 1.10651 1.55674 1.11060 1.19444 0.85528 0.84096 0.87092 1.90588 1.24699 1.69009 1.61083 1.41958 1.16562 1.36231 1.25605 1.19055 1.03146 1.19453 1.03733 0.91811 1.25950 1.02865 0.94934 0.96569 1.69773 1.37775 1.25678 1.22970 0.85575 0.78071 0.79399 0.80023 1.17234 1.19514 1.16785 1.20220 0.75173 0.78882 0.84967 1.93147 1.93050 1.76012 1.53084 1.93185 1.75939 1.50443 1.96725 1.93283 1.31670 1.92780 1.96320 0.90852 0.88667 0.92729 0.83792 0.82356 0.82167 0.82940 0.81029 0.80683 0.77053 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.30 -11.37 3.94 -69.98 -0.28 -11.64 16 3 C 0.15 5.16 5.58 22.51 0.13 5.28 16 4 C -0.23 -6.01 9.04 22.37 0.20 -5.81 16 5 C -0.06 -1.30 10.04 22.26 0.22 -1.08 16 6 C -0.16 -3.19 10.04 22.28 0.22 -2.97 16 7 C -0.07 -1.65 9.04 22.25 0.20 -1.45 16 8 C -0.19 -6.19 4.38 -19.77 -0.09 -6.27 16 9 C 0.14 4.90 0.55 2.03 0.00 4.91 16 10 N -0.82 -22.31 7.33 -157.52 -1.15 -23.46 16 11 C 0.45 21.79 5.98 87.66 0.52 22.31 16 12 O -0.57 -31.64 12.99 19.35 0.25 -31.39 16 13 N -0.56 -28.37 4.93 -306.99 -1.51 -29.88 16 14 C -0.32 -19.38 10.16 84.04 0.85 -18.53 16 15 H 0.06 4.43 7.39 -2.91 -0.02 4.41 16 16 C 0.00 -0.16 5.50 84.93 0.47 0.30 16 17 N -0.92 -55.60 13.96 21.66 0.30 -55.29 16 18 Si 0.95 40.91 27.74 68.60 1.90 42.81 16 19 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.24 -9.79 6.52 99.48 0.65 -9.15 16 22 C 0.46 16.97 2.33 71.98 0.17 17.14 16 23 F -0.17 -5.28 16.50 44.97 0.74 -4.54 16 24 F -0.18 -7.10 16.89 44.97 0.76 -6.34 16 25 F -0.16 -6.39 12.70 44.97 0.57 -5.81 16 26 H 0.07 1.60 7.66 -2.39 -0.02 1.58 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.05 1.47 7.66 -2.39 -0.02 1.45 16 29 H 0.14 3.14 6.30 -2.91 -0.02 3.12 16 30 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.15 2.58 6.19 -2.91 -0.02 2.56 16 33 H 0.37 7.51 7.78 -89.69 -0.70 6.82 16 34 H 0.37 9.06 8.04 -89.69 -0.72 8.34 16 35 H 0.39 17.79 5.12 -92.70 -0.47 17.31 16 36 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -77.05 308.87 4.84 -72.21 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -0.76 Total: 37.82 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 4.02 Total: 15.51 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -2.36 Total: -108.63 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.02 Total: -43.03 kcal Atomic # 9 Polarization: -18.77 SS G_CDS: 2.07 Total: -16.69 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.90 Total: 42.81 kcal Total: -77.05 4.84 -72.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359807168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.860 kcal (2) G-P(sol) polarization free energy of solvation -77.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds