Wall clock time and date at job start Tue Mar 31 2020 11:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35725 * 117.00020 * 2 1 4 4 C 1.39232 * 120.38073 * 180.02562 * 3 2 1 5 5 C 1.38321 * 118.44151 * 180.02562 * 4 3 2 6 6 C 1.39466 * 119.13557 * 359.97438 * 5 4 3 7 7 C 1.47924 * 119.65960 * 179.97438 * 6 5 4 8 8 O 1.21544 * 120.00377 * 354.22035 * 7 6 5 9 9 N 1.34782 * 119.99891 * 173.93553 * 7 6 5 10 10 C 1.46498 * 120.00001 * 354.91656 * 9 7 6 11 11 C 1.50695 * 109.47248 * 85.19223 * 10 9 7 12 12 H 1.08001 * 120.00138 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99769 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00355 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99830 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47103 * 60.00192 * 15 13 11 17 17 H 1.48501 * 109.46879 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47138 * 299.99893 * 15 13 11 19 19 C 1.46502 * 119.99664 * 174.91022 * 9 7 6 20 20 C 1.53005 * 109.47047 * 91.42488 * 19 9 7 21 21 F 1.39899 * 109.46737 * 60.00037 * 20 19 9 22 22 F 1.39904 * 109.46797 * 179.97438 * 20 19 9 23 23 F 1.39900 * 109.47090 * 299.99847 * 20 19 9 24 24 N 1.32801 * 120.68636 * 0.27477 * 6 5 4 25 25 C 1.31385 * 121.68654 * 359.43381 * 24 6 5 26 26 H 1.08999 * 109.47531 * 59.99812 * 1 2 3 27 27 H 1.09006 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47144 * 299.99816 * 1 2 3 29 29 H 1.07993 * 120.77727 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.43175 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.46468 * 205.19530 * 10 9 7 32 32 H 1.09002 * 109.46942 * 325.18960 * 10 9 7 33 33 H 0.97001 * 120.00063 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47160 * 211.42204 * 19 9 7 35 35 H 1.08995 * 109.47558 * 331.42287 * 19 9 7 36 36 H 1.08001 * 119.58937 * 180.28925 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4350 1.2914 -0.0005 5 6 4.0209 2.5444 0.0000 6 6 3.2050 3.6755 0.0006 7 6 3.8193 5.0212 0.0017 8 8 5.0243 5.1391 0.1082 9 7 3.0433 6.1163 -0.1210 10 6 1.6064 5.9720 -0.3672 11 6 0.8875 5.7920 0.9449 12 1 1.4451 5.7861 1.8698 13 6 -0.4822 5.6358 0.9648 14 7 -1.1614 5.6435 -0.1614 15 14 -1.3734 5.4134 2.5914 16 1 -1.1350 6.5994 3.4527 17 1 -2.8300 5.2670 2.3418 18 1 -0.8637 4.1963 3.2727 19 6 3.6368 7.4510 -0.0082 20 6 4.0536 7.9427 -1.3958 21 9 2.9297 8.0009 -2.2269 22 9 4.6199 9.2175 -1.2881 23 9 4.9918 7.0598 -1.9412 24 7 1.8823 3.5571 0.0060 25 6 1.2946 2.3820 0.0000 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.0413 0.3978 -0.0005 30 1 5.0962 2.6455 -0.0008 31 1 1.2320 6.8654 -0.8671 32 1 1.4317 5.1016 -0.9996 33 1 -2.1250 5.5333 -0.1475 34 1 2.9059 8.1389 0.4166 35 1 4.5124 7.4057 0.6394 36 1 0.2161 2.3251 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361858657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:29 Heat of formation + Delta-G solvation = -181.394151 kcal Electronic energy + Delta-G solvation = -27788.241016 eV Core-core repulsion = 23244.506615 eV Total energy + Delta-G solvation = -4543.734401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.05328 -48.57686 -48.53811 -41.87158 -40.56072 -38.77679 -37.01876 -34.49289 -33.42544 -32.05659 -30.59659 -28.76200 -28.33735 -25.61320 -24.83806 -24.41533 -23.59021 -21.13300 -19.57280 -19.49191 -19.11136 -18.84944 -18.52035 -17.97248 -17.82559 -16.85023 -16.76158 -16.39211 -15.95313 -15.73381 -15.45160 -15.42538 -15.03241 -14.98990 -14.95808 -14.72464 -14.70362 -14.30669 -14.30603 -14.11465 -13.76524 -13.42090 -13.27464 -13.00427 -12.79047 -12.74160 -12.50417 -12.29897 -12.03293 -11.67783 -11.24524 -10.73854 -10.41430 -9.84466 -9.70650 -9.43337 -8.00574 -6.03526 -0.24774 0.33654 1.43738 1.46438 1.51594 1.54097 1.82019 2.04324 2.18260 2.50664 2.83337 2.99586 3.07414 3.25583 3.34538 3.40516 3.61267 3.76265 4.01408 4.14205 4.29907 4.35099 4.36696 4.39891 4.64376 4.73041 4.82223 4.89344 5.02437 5.38614 5.50663 5.75401 5.88110 6.16014 6.27781 6.34731 6.84604 6.99491 7.21262 7.57316 9.07779 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.006076 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.824015 B = 4607.457769 C = 6372.553127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.312 6.312 3 C 0.104 3.896 4 C -0.123 4.123 5 C -0.068 4.068 6 C 0.000 4.000 7 C 0.573 3.427 8 O -0.565 6.565 9 N -0.587 5.587 10 C 0.256 3.744 11 C -0.488 4.488 12 H 0.042 0.958 13 C 0.034 3.966 14 N -0.917 5.917 15 Si 0.935 3.065 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.279 1.279 19 C 0.077 3.923 20 C 0.437 3.563 21 F -0.189 7.189 22 F -0.178 7.178 23 F -0.187 7.187 24 N -0.369 5.369 25 C 0.000 4.000 26 H 0.062 0.938 27 H 0.134 0.866 28 H 0.058 0.942 29 H 0.179 0.821 30 H 0.163 0.837 31 H 0.015 0.985 32 H 0.056 0.944 33 H 0.261 0.739 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 -6.922 -0.188 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.223 6.223 3 C 0.055 3.945 4 C -0.149 4.149 5 C -0.089 4.089 6 C -0.138 4.138 7 C 0.362 3.638 8 O -0.445 6.445 9 N -0.316 5.316 10 C 0.137 3.863 11 C -0.527 4.527 12 H 0.060 0.940 13 C -0.165 4.165 14 N -0.558 5.558 15 Si 0.763 3.237 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.205 1.205 19 C -0.049 4.049 20 C 0.381 3.619 21 F -0.170 7.170 22 F -0.160 7.160 23 F -0.169 7.169 24 N -0.081 5.081 25 C -0.162 4.162 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.076 0.924 29 H 0.197 0.803 30 H 0.180 0.820 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.171 -6.298 -0.230 8.152 hybrid contribution -0.638 -0.322 0.501 0.873 sum 4.532 -6.620 0.271 8.028 Atomic orbital electron populations 1.23435 0.76135 1.06179 1.02246 1.85991 1.23539 1.25231 1.87533 1.20532 0.93795 0.85756 0.94458 1.21075 0.91289 0.98942 1.03549 1.22048 1.02111 0.90557 0.94145 1.20959 0.90529 0.93945 1.08342 1.18183 0.85426 0.84541 0.75610 1.90685 1.14040 1.87021 1.52772 1.48089 1.11506 1.03514 1.68533 1.19609 0.72320 0.97364 0.97023 1.21155 0.91790 1.47640 0.92164 0.94017 1.25233 0.97719 0.95569 0.98003 1.70014 1.07459 1.51542 1.26793 0.85987 0.77717 0.78459 0.81583 1.20345 1.21030 1.20494 1.22673 1.03982 0.87263 0.90977 1.21437 0.74614 0.75251 0.90559 1.93183 1.52391 1.96162 1.75311 1.93162 1.85555 1.40917 1.96345 1.93181 1.66581 1.69074 1.88054 1.68490 1.09851 1.25894 1.03823 1.23280 1.01283 0.87072 1.04592 0.91938 0.84788 0.92380 0.80349 0.81962 0.96716 0.92654 0.93014 0.84412 0.85082 0.82482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.82 113.37 1.11 1.38 16 2 O -0.31 -7.75 10.50 -90.47 -0.95 -8.70 16 3 C 0.10 3.06 6.72 22.75 0.15 3.21 16 4 C -0.12 -3.28 10.12 22.53 0.23 -3.05 16 5 C -0.07 -2.13 9.62 22.59 0.22 -1.91 16 6 C 0.00 -0.01 6.56 41.86 0.27 0.26 16 7 C 0.57 24.08 7.29 86.81 0.63 24.71 16 8 O -0.56 -23.90 15.20 -3.86 -0.06 -23.96 16 9 N -0.59 -24.64 2.39 -829.47 -1.98 -26.62 16 10 C 0.26 12.27 4.48 85.63 0.38 12.66 16 11 C -0.49 -24.63 7.47 25.60 0.19 -24.44 16 12 H 0.04 2.16 7.81 -2.91 -0.02 2.14 16 13 C 0.03 1.73 5.46 84.65 0.46 2.19 16 14 N -0.92 -49.09 13.29 21.45 0.28 -48.81 16 15 Si 0.94 40.99 29.54 68.60 2.03 43.02 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 C 0.08 2.66 5.40 86.38 0.47 3.13 16 20 C 0.44 15.06 3.29 71.98 0.24 15.29 16 21 F -0.19 -7.16 16.18 44.97 0.73 -6.43 16 22 F -0.18 -5.46 17.32 44.97 0.78 -4.68 16 23 F -0.19 -7.02 16.19 44.97 0.73 -6.29 16 24 N -0.37 -15.58 4.78 -184.53 -0.88 -16.46 16 25 C 0.00 -0.02 10.21 85.00 0.87 0.85 16 26 H 0.06 1.21 7.67 -2.39 -0.02 1.19 16 27 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.06 1.16 7.67 -2.38 -0.02 1.14 16 29 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.16 4.50 7.65 -2.91 -0.02 4.48 16 31 H 0.01 0.76 7.23 -2.39 -0.02 0.74 16 32 H 0.06 2.88 5.69 -2.39 -0.01 2.86 16 33 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 34 H 0.14 4.34 8.08 -2.39 -0.02 4.32 16 35 H 0.13 4.12 7.46 -2.39 -0.02 4.10 16 36 H 0.16 5.52 6.31 -2.91 -0.02 5.51 16 Total: -1.00 -61.98 323.22 7.04 -54.93 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.14 Total: 9.71 kcal Atomic # 6 Polarization: 29.06 SS G_CDS: 5.23 Total: 34.29 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -2.57 Total: -91.89 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.01 Total: -32.66 kcal Atomic # 9 Polarization: -19.63 SS G_CDS: 2.23 Total: -17.40 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -61.98 7.04 -54.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361858657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.461 kcal (2) G-P(sol) polarization free energy of solvation -61.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds