Wall clock time and date at job start Tue Mar 31 2020 12:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47234 * 239.99810 * 2 1 3 5 5 S 1.81394 * 109.46950 * 65.00127 * 4 2 1 6 6 C 1.81399 * 102.99894 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47445 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47353 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00290 * 0.02562 * 8 7 6 10 10 C 1.37870 * 119.99993 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00258 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47183 * 60.00346 * 12 10 8 14 14 H 1.48503 * 109.47086 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47288 * 300.00006 * 12 10 8 16 16 C 1.50702 * 109.47262 * 119.99608 * 2 1 3 17 17 C 1.38239 * 119.99728 * 59.72609 * 16 2 1 18 18 C 1.38237 * 120.00119 * 179.78878 * 17 16 2 19 19 C 1.38236 * 119.99727 * 0.44611 * 18 17 16 20 20 C 1.50703 * 120.00014 * 179.83415 * 19 18 17 21 21 F 1.39894 * 109.46763 * 269.97509 * 20 19 18 22 22 F 1.39902 * 109.46887 * 29.97565 * 20 19 18 23 23 F 1.39903 * 109.47088 * 149.97489 * 20 19 18 24 24 C 1.38239 * 120.00217 * 359.80726 * 19 18 17 25 25 C 1.38234 * 119.99691 * 359.97438 * 24 19 18 26 26 H 1.09002 * 109.47240 * 59.99833 * 1 2 3 27 27 H 1.08997 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47193 * 300.00334 * 1 2 3 29 29 H 1.09002 * 109.46725 * 305.00012 * 4 2 1 30 30 H 1.08998 * 109.46794 * 184.99836 * 4 2 1 31 31 H 1.09001 * 109.47190 * 299.99732 * 6 5 4 32 32 H 1.09004 * 109.47089 * 59.99865 * 6 5 4 33 33 H 1.09001 * 109.46962 * 300.00183 * 7 6 5 34 34 H 1.09004 * 109.46832 * 60.00020 * 7 6 5 35 35 H 0.96999 * 120.00397 * 179.97438 * 11 10 8 36 36 H 1.08001 * 119.99842 * 359.97438 * 17 16 2 37 37 H 1.07996 * 120.00032 * 180.27351 * 18 17 16 38 38 H 1.07997 * 119.99994 * 180.02562 * 24 19 18 39 39 H 1.07998 * 120.00163 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 1.5601 0.2155 -2.7265 6 6 2.2431 -0.7798 -4.0805 7 6 1.9176 -0.1127 -5.4185 8 6 2.4855 -0.9393 -6.5433 9 1 3.0244 -1.8497 -6.3258 10 6 2.3172 -0.5334 -7.8501 11 7 1.6615 0.5754 -8.1151 12 14 3.0206 -1.5584 -9.2444 13 1 2.4219 -2.9170 -9.2109 14 1 2.7058 -0.9102 -10.5429 15 1 4.4936 -1.6625 -9.0880 16 6 2.0323 -0.7103 1.2305 17 6 1.6937 -2.0321 1.4522 18 6 2.1581 -2.6851 2.5787 19 6 2.9535 -2.0135 3.4882 20 6 3.4567 -2.7242 4.7182 21 9 2.5362 -2.5629 5.7592 22 9 3.6113 -4.0863 4.4392 23 9 4.6897 -2.1830 5.0978 24 6 3.2878 -0.6901 3.2692 25 6 2.8272 -0.0386 2.1404 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6053 -1.7198 -1.2950 30 1 3.1263 -0.7994 -1.2055 31 1 3.3244 -0.8562 -3.9658 32 1 1.8038 -1.7771 -4.0558 33 1 0.8363 -0.0367 -5.5330 34 1 2.3566 0.8847 -5.4435 35 1 1.5434 0.8612 -9.0344 36 1 1.0688 -2.5556 0.7437 37 1 1.8971 -3.7190 2.7496 38 1 3.9096 -0.1656 3.9795 39 1 3.0880 0.9954 1.9695 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409871948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:24 Heat of formation + Delta-G solvation = -156.069730 kcal Electronic energy + Delta-G solvation = -22913.910755 eV Core-core repulsion = 18917.567718 eV Total energy + Delta-G solvation = -3996.343037 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.48573 -48.00265 -47.95037 -40.07964 -35.92326 -33.70593 -31.56287 -31.11141 -30.88734 -27.43871 -26.28794 -25.22184 -23.52121 -22.78688 -21.27545 -20.26685 -18.85877 -18.79627 -18.68248 -16.54674 -16.50501 -15.72362 -15.35741 -15.14378 -14.82375 -14.76934 -14.52745 -14.50308 -14.39998 -14.19697 -14.10982 -13.89298 -13.80723 -13.57523 -13.53930 -12.89718 -12.74942 -12.21580 -11.97817 -11.81424 -11.68899 -11.41606 -11.16055 -11.05649 -10.98341 -10.61837 -10.21185 -9.69583 -9.53748 -9.44152 -9.33171 -9.07818 -8.44087 -7.17379 -6.08139 -4.12921 0.53100 0.89424 2.12154 2.32777 3.09948 3.19002 3.28689 3.33572 3.35944 3.38180 3.68447 4.08995 4.34014 4.39719 4.43443 4.46525 4.72604 4.87477 4.92977 5.03061 5.14173 5.27321 5.37855 5.46166 5.54003 5.60715 5.74529 5.78527 5.84966 5.90641 5.96159 6.14380 6.15410 6.25968 6.39124 6.69926 7.53638 7.62503 7.87831 8.25118 8.91834 9.51072 11.02566 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.002064 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.085012 B =13565.598330 C =14161.279099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 H 0.091 0.909 4 C -0.084 4.084 5 S -0.281 6.281 6 C -0.059 4.059 7 C 0.038 3.962 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.897 3.103 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C -0.035 4.035 17 C -0.114 4.114 18 C -0.068 4.068 19 C -0.192 4.192 20 C 0.509 3.491 21 F -0.178 7.178 22 F -0.178 7.178 23 F -0.178 7.178 24 C -0.068 4.068 25 C -0.116 4.116 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -4.189 26.745 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.058 4.058 3 H 0.110 0.890 4 C -0.233 4.233 5 S -0.053 6.053 6 C -0.207 4.207 7 C 0.000 4.000 8 C -0.562 4.562 9 H 0.075 0.925 10 C -0.142 4.142 11 N -0.529 5.529 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.036 4.036 17 C -0.132 4.132 18 C -0.086 4.086 19 C -0.194 4.194 20 C 0.455 3.545 21 F -0.159 7.159 22 F -0.159 7.159 23 F -0.159 7.159 24 C -0.086 4.086 25 C -0.134 4.134 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.368 -3.144 26.576 26.764 hybrid contribution 1.241 -1.865 -0.505 2.297 sum 1.609 -5.009 26.071 26.596 Atomic orbital electron populations 1.21918 0.92923 1.02623 1.02880 1.20014 0.97138 0.99365 0.89321 0.89032 1.23382 1.03425 1.01393 0.95081 1.86853 1.76740 1.40381 1.01280 1.23693 1.01298 0.99734 0.95976 1.18894 0.97929 0.96188 0.87028 1.21054 1.35876 1.08639 0.90680 0.92548 1.25009 0.95172 0.95175 0.98883 1.69957 1.40854 1.22219 1.19870 0.86583 0.79532 0.80303 0.81153 1.20146 1.21146 1.20154 1.20206 0.94294 0.93966 0.95180 1.21071 1.00424 0.94410 0.97320 1.20931 0.94626 1.00056 0.93011 1.19940 1.06482 0.96602 0.96343 1.18332 0.75335 0.76968 0.83882 1.93223 1.66445 1.95313 1.60965 1.93193 1.95528 1.33570 1.93625 1.93190 1.44592 1.85740 1.92427 1.20924 0.97610 0.92487 0.97620 1.21123 0.97952 1.00669 0.93668 0.90288 0.92326 0.92530 0.90374 0.90454 0.91468 0.91435 0.95541 0.95557 0.92702 0.84633 0.84718 0.84715 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.83 37.16 0.33 -1.11 16 2 C -0.04 -0.40 2.56 -91.77 -0.23 -0.63 16 3 H 0.09 0.93 7.88 -51.93 -0.41 0.52 16 4 C -0.08 -1.05 5.13 37.16 0.19 -0.86 16 5 S -0.28 -4.82 20.55 -107.50 -2.21 -7.03 16 6 C -0.06 -1.21 5.88 37.16 0.22 -0.99 16 7 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 8 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 9 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 12 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C -0.03 -0.32 4.78 -104.62 -0.50 -0.82 16 17 C -0.11 -0.98 8.76 -39.58 -0.35 -1.33 16 18 C -0.07 -0.57 9.40 -39.58 -0.37 -0.95 16 19 C -0.19 -1.70 5.45 -104.62 -0.57 -2.27 16 20 C 0.51 4.59 3.36 36.01 0.12 4.71 16 21 F -0.18 -1.68 17.30 2.25 0.04 -1.65 16 22 F -0.18 -1.68 16.46 2.25 0.04 -1.64 16 23 F -0.18 -1.65 16.46 2.25 0.04 -1.62 16 24 C -0.07 -0.56 9.40 -39.58 -0.37 -0.93 16 25 C -0.12 -0.96 9.67 -39.58 -0.38 -1.34 16 26 H 0.08 0.91 7.13 -51.93 -0.37 0.54 16 27 H 0.06 0.54 7.37 -51.93 -0.38 0.16 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.92 7.59 -51.92 -0.39 0.53 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 32 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.14 1.03 7.16 -52.49 -0.38 0.65 16 37 H 0.13 0.93 7.60 -52.49 -0.40 0.53 16 38 H 0.13 0.88 7.60 -52.49 -0.40 0.48 16 39 H 0.14 0.90 7.95 -52.49 -0.42 0.48 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -29.50 352.88 -8.76 -38.26 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -5.22 Total: -3.31 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.47 Total: -18.88 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.11 Total: -4.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -2.21 Total: -7.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.50 -8.76 -38.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409871948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.809 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds