Wall clock time and date at job start Tue Mar 31 2020 12:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47234 * 239.99810 * 2 1 3 5 5 S 1.81394 * 109.46950 * 65.00127 * 4 2 1 6 6 C 1.81399 * 102.99894 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47445 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47353 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00290 * 0.02562 * 8 7 6 10 10 C 1.37870 * 119.99993 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00258 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47183 * 60.00346 * 12 10 8 14 14 H 1.48503 * 109.47086 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47288 * 300.00006 * 12 10 8 16 16 C 1.50702 * 109.47262 * 119.99608 * 2 1 3 17 17 C 1.38239 * 119.99728 * 59.72609 * 16 2 1 18 18 C 1.38237 * 120.00119 * 179.78878 * 17 16 2 19 19 C 1.38236 * 119.99727 * 0.44611 * 18 17 16 20 20 C 1.50703 * 120.00014 * 179.83415 * 19 18 17 21 21 F 1.39894 * 109.46763 * 269.97509 * 20 19 18 22 22 F 1.39902 * 109.46887 * 29.97565 * 20 19 18 23 23 F 1.39903 * 109.47088 * 149.97489 * 20 19 18 24 24 C 1.38239 * 120.00217 * 359.80726 * 19 18 17 25 25 C 1.38234 * 119.99691 * 359.97438 * 24 19 18 26 26 H 1.09002 * 109.47240 * 59.99833 * 1 2 3 27 27 H 1.08997 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47193 * 300.00334 * 1 2 3 29 29 H 1.09002 * 109.46725 * 305.00012 * 4 2 1 30 30 H 1.08998 * 109.46794 * 184.99836 * 4 2 1 31 31 H 1.09001 * 109.47190 * 299.99732 * 6 5 4 32 32 H 1.09004 * 109.47089 * 59.99865 * 6 5 4 33 33 H 1.09001 * 109.46962 * 300.00183 * 7 6 5 34 34 H 1.09004 * 109.46832 * 60.00020 * 7 6 5 35 35 H 0.96999 * 120.00397 * 179.97438 * 11 10 8 36 36 H 1.08001 * 119.99842 * 359.97438 * 17 16 2 37 37 H 1.07996 * 120.00032 * 180.27351 * 18 17 16 38 38 H 1.07997 * 119.99994 * 180.02562 * 24 19 18 39 39 H 1.07998 * 120.00163 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 1.5601 0.2155 -2.7265 6 6 2.2431 -0.7798 -4.0805 7 6 1.9176 -0.1127 -5.4185 8 6 2.4855 -0.9393 -6.5433 9 1 3.0244 -1.8497 -6.3258 10 6 2.3172 -0.5334 -7.8501 11 7 1.6615 0.5754 -8.1151 12 14 3.0206 -1.5584 -9.2444 13 1 2.4219 -2.9170 -9.2109 14 1 2.7058 -0.9102 -10.5429 15 1 4.4936 -1.6625 -9.0880 16 6 2.0323 -0.7103 1.2305 17 6 1.6937 -2.0321 1.4522 18 6 2.1581 -2.6851 2.5787 19 6 2.9535 -2.0135 3.4882 20 6 3.4567 -2.7242 4.7182 21 9 2.5362 -2.5629 5.7592 22 9 3.6113 -4.0863 4.4392 23 9 4.6897 -2.1830 5.0978 24 6 3.2878 -0.6901 3.2692 25 6 2.8272 -0.0386 2.1404 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6053 -1.7198 -1.2950 30 1 3.1263 -0.7994 -1.2055 31 1 3.3244 -0.8562 -3.9658 32 1 1.8038 -1.7771 -4.0558 33 1 0.8363 -0.0367 -5.5330 34 1 2.3566 0.8847 -5.4435 35 1 1.5434 0.8612 -9.0344 36 1 1.0688 -2.5556 0.7437 37 1 1.8971 -3.7190 2.7496 38 1 3.9096 -0.1656 3.9795 39 1 3.0880 0.9954 1.9695 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409871948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:23 Heat of formation + Delta-G solvation = -168.420875 kcal Electronic energy + Delta-G solvation = -22914.446341 eV Core-core repulsion = 18917.567718 eV Total energy + Delta-G solvation = -3996.878623 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.19661 -48.71633 -48.66706 -40.74071 -36.71105 -35.76378 -32.89498 -32.19177 -31.81235 -28.43575 -27.22015 -26.97162 -24.19852 -23.59066 -23.01397 -21.13372 -19.54496 -19.48317 -19.39002 -18.66427 -17.38854 -16.71091 -16.48329 -16.36350 -15.85402 -15.74879 -15.51958 -15.42893 -15.13197 -15.02454 -14.91047 -14.86903 -14.82730 -14.67152 -14.33504 -14.13859 -13.78472 -13.58875 -13.28339 -12.99753 -12.88810 -12.48450 -12.46982 -12.40715 -12.13588 -11.99573 -11.79705 -11.63931 -11.20098 -10.74436 -10.59818 -10.05771 -10.02903 -8.56802 -8.22855 -6.36358 -0.14141 0.27886 0.81672 1.41209 1.44070 1.52265 1.63786 1.79983 2.40507 2.44579 2.70160 2.99926 3.10260 3.39561 3.61862 3.69601 3.88863 3.95799 3.99425 4.27434 4.30362 4.36259 4.38698 4.41122 4.62712 4.66904 4.73257 4.88970 4.93926 4.97171 5.09627 5.16580 5.19262 5.37084 5.38626 5.51087 5.54717 5.74206 5.75962 6.11766 6.77906 7.33086 8.88554 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.002064 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.085012 B =13565.598330 C =14161.279099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 H 0.092 0.908 4 C -0.068 4.068 5 S -0.303 6.303 6 C -0.052 4.052 7 C 0.045 3.955 8 C -0.543 4.543 9 H 0.066 0.934 10 C 0.001 3.999 11 N -0.931 5.931 12 Si 0.970 3.030 13 H -0.265 1.265 14 H -0.283 1.283 15 H -0.266 1.266 16 C -0.041 4.041 17 C -0.117 4.117 18 C -0.073 4.073 19 C -0.200 4.200 20 C 0.511 3.489 21 F -0.181 7.181 22 F -0.181 7.181 23 F -0.180 7.180 24 C -0.071 4.071 25 C -0.117 4.117 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.075 0.925 33 H -0.003 1.003 34 H -0.004 1.004 35 H 0.266 0.734 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -5.410 27.843 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 H 0.110 0.890 4 C -0.216 4.216 5 S -0.074 6.074 6 C -0.200 4.200 7 C 0.007 3.993 8 C -0.583 4.583 9 H 0.084 0.916 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.794 3.206 13 H -0.190 1.190 14 H -0.209 1.209 15 H -0.190 1.190 16 C -0.043 4.043 17 C -0.135 4.135 18 C -0.091 4.091 19 C -0.201 4.201 20 C 0.457 3.543 21 F -0.163 7.163 22 F -0.162 7.162 23 F -0.162 7.162 24 C -0.089 4.089 25 C -0.135 4.135 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.084 -4.373 27.681 28.045 hybrid contribution 1.004 -1.462 -0.706 1.909 sum 2.087 -5.835 26.974 27.677 Atomic orbital electron populations 1.21894 0.92756 1.03044 1.02496 1.19913 0.97233 0.99251 0.88632 0.88996 1.23475 1.03862 1.01332 0.92959 1.86890 1.76717 1.41089 1.02749 1.23316 1.01840 0.99891 0.94974 1.18664 0.95560 0.95014 0.90106 1.21526 1.35888 1.09156 0.91725 0.91590 1.26013 0.95401 0.96355 1.01945 1.70101 1.42253 1.24101 1.20579 0.85424 0.79112 0.78723 0.77334 1.18955 1.20859 1.19031 1.20095 0.95099 0.94231 0.94892 1.21209 1.00436 0.94316 0.97569 1.21103 0.94420 1.00727 0.92819 1.20052 1.06751 0.97008 0.96286 1.18362 0.75181 0.76835 0.83928 1.93216 1.66558 1.95318 1.61192 1.93185 1.95541 1.33866 1.93636 1.93185 1.44748 1.85749 1.92472 1.21128 0.97594 0.92336 0.97877 1.21316 0.97359 1.01433 0.93351 0.92314 0.91553 0.91205 0.89183 0.89915 0.90923 0.90678 0.98474 0.98588 0.92570 0.83672 0.83514 0.83265 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.83 71.98 0.64 -1.97 16 2 C -0.03 -0.56 2.56 -11.54 -0.03 -0.59 16 3 H 0.09 1.69 7.88 -2.39 -0.02 1.68 16 4 C -0.07 -1.57 5.13 71.98 0.37 -1.20 16 5 S -0.30 -10.33 20.55 -56.49 -1.16 -11.49 16 6 C -0.05 -2.13 5.88 71.98 0.42 -1.71 16 7 C 0.04 2.38 4.98 29.85 0.15 2.53 16 8 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 9 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 10 C 0.00 0.08 5.46 84.65 0.46 0.54 16 11 N -0.93 -56.47 13.29 21.44 0.28 -56.19 16 12 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 13 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 16 C -0.04 -0.65 4.78 -19.86 -0.09 -0.75 16 17 C -0.12 -1.74 8.76 22.27 0.20 -1.54 16 18 C -0.07 -1.07 9.40 22.27 0.21 -0.86 16 19 C -0.20 -3.13 5.45 -19.86 -0.11 -3.24 16 20 C 0.51 8.43 3.36 71.24 0.24 8.66 16 21 F -0.18 -3.18 17.30 44.97 0.78 -2.40 16 22 F -0.18 -3.15 16.46 44.97 0.74 -2.41 16 23 F -0.18 -3.08 16.46 44.97 0.74 -2.34 16 24 C -0.07 -1.00 9.40 22.27 0.21 -0.80 16 25 C -0.12 -1.64 9.67 22.27 0.22 -1.42 16 26 H 0.06 1.31 7.13 -2.39 -0.02 1.29 16 27 H 0.07 1.09 7.37 -2.39 -0.02 1.07 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.09 1.90 7.59 -2.39 -0.02 1.88 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 35 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.15 1.82 7.16 -2.91 -0.02 1.80 16 37 H 0.15 1.72 7.60 -2.91 -0.02 1.70 16 38 H 0.15 1.60 7.60 -2.91 -0.02 1.58 16 39 H 0.15 1.60 7.95 -2.91 -0.02 1.58 16 Total: -1.00 -64.02 352.88 7.57 -56.46 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.05 Total: 5.49 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.11 Total: -32.60 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 2.26 Total: -7.15 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -10.33 SS G_CDS: -1.16 Total: -11.49 kcal Total: -64.02 7.57 -56.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409871948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.964 kcal (2) G-P(sol) polarization free energy of solvation -64.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds