Wall clock time and date at job start Tue Mar 31 2020 11:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.47237 * 2 1 4 4 C 1.35426 * 117.00124 * 179.97438 * 3 2 1 5 5 N 1.32243 * 119.79854 * 359.97438 * 4 3 2 6 6 C 1.31878 * 121.79607 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40425 * 180.02562 * 6 5 4 8 8 F 1.39905 * 109.47157 * 5.00034 * 7 6 5 9 9 F 1.39900 * 109.47159 * 245.00334 * 7 6 5 10 10 F 1.39897 * 109.47274 * 125.00026 * 7 6 5 11 11 C 1.38352 * 121.19024 * 0.27698 * 6 5 4 12 12 C 1.38345 * 119.45504 * 359.45726 * 11 6 5 13 13 C 1.39984 * 118.34863 * 0.52385 * 12 11 6 14 14 C 1.47523 * 120.59610 * 179.70867 * 13 12 11 15 15 O 1.21593 * 119.99776 * 180.02562 * 14 13 12 16 16 N 1.34778 * 120.00298 * 0.03348 * 14 13 12 17 17 C 1.46494 * 120.00095 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46908 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00008 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00174 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99619 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00226 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47103 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47187 * 120.00046 * 22 20 18 25 25 H 1.48497 * 109.47116 * 239.99923 * 22 20 18 26 26 H 1.08996 * 109.47274 * 299.99945 * 1 2 3 27 27 H 1.09004 * 109.46694 * 60.00031 * 1 2 3 28 28 H 1.09001 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47274 * 240.00055 * 2 1 3 30 30 H 1.09004 * 109.47436 * 119.99921 * 2 1 3 31 31 H 1.08001 * 120.27472 * 179.72096 * 11 6 5 32 32 H 1.08001 * 120.82129 * 180.23682 * 12 11 6 33 33 H 0.97006 * 119.99233 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.47037 * 299.99554 * 17 16 14 35 35 H 1.08993 * 109.47324 * 59.99622 * 17 16 14 36 36 H 0.96999 * 119.99646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5248 0.0005 5 7 4.1509 0.4732 0.0015 6 6 5.4635 0.6003 0.0016 7 6 6.3265 -0.6352 0.0022 8 9 5.5163 -1.7700 -0.1124 9 9 7.0504 -0.6978 1.1977 10 9 7.2138 -0.5847 -1.0782 11 6 6.0626 1.8474 0.0063 12 6 5.2714 2.9822 -0.0003 13 6 3.8806 2.8229 -0.0005 14 6 2.9901 3.9990 -0.0009 15 8 1.7836 3.8480 -0.0006 16 7 3.5138 5.2409 -0.0020 17 6 2.6295 6.4088 -0.0030 18 6 3.4590 7.6669 -0.0034 19 1 4.5371 7.6029 -0.0025 20 6 2.8416 8.8998 -0.0049 21 7 1.5287 8.9777 -0.0066 22 14 3.8698 10.4593 -0.0062 23 1 5.3111 10.1019 -0.0046 24 1 3.5583 11.2566 -1.2195 25 1 3.5573 11.2591 1.2054 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 7.1391 1.9343 0.0108 32 1 5.7157 3.9666 -0.0007 33 1 4.4764 5.3613 -0.0020 34 1 2.0006 6.3875 -0.8931 35 1 2.0004 6.3890 0.8868 36 1 1.0944 9.8450 -0.0080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427626333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:37 Heat of formation + Delta-G solvation = -210.513545 kcal Electronic energy + Delta-G solvation = -26330.840730 eV Core-core repulsion = 21785.843617 eV Total energy + Delta-G solvation = -4544.997113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.26631 -48.77685 -48.72975 -42.26231 -40.17900 -39.37274 -36.20312 -34.73850 -33.90505 -33.34352 -31.75005 -29.58566 -28.06121 -25.49274 -24.82853 -24.04301 -23.52405 -21.72891 -20.34543 -19.67590 -19.64787 -19.55944 -18.66776 -17.87033 -17.61201 -17.54189 -16.72010 -16.26163 -16.16408 -15.69164 -15.55416 -15.21863 -15.15741 -15.07801 -15.06193 -14.98048 -14.86510 -14.85982 -14.32397 -13.92339 -13.92245 -13.53535 -13.51869 -13.30599 -12.88371 -12.74711 -12.54994 -12.19498 -11.87342 -11.46711 -11.41645 -11.36444 -10.85133 -10.80705 -10.04137 -9.77188 -8.27306 -6.43764 -0.91682 -0.09483 1.17526 1.46642 1.47280 1.59852 1.60603 1.80637 2.16789 2.35178 2.42790 2.47670 2.73891 3.08616 3.24100 3.41194 3.48456 3.58017 3.76655 3.95421 4.00340 4.10584 4.34876 4.49679 4.63305 4.74607 4.87556 4.96661 5.12426 5.17333 5.24731 5.44373 5.65370 5.84327 5.96630 6.22018 6.65443 6.81192 7.23026 7.38818 8.85140 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015533 B = 0.003301 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.193745 B = 8480.836275 C =10092.628977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.291 6.291 4 C 0.362 3.638 5 N -0.518 5.518 6 C 0.085 3.915 7 C 0.532 3.468 8 F -0.170 7.170 9 F -0.163 7.163 10 F -0.161 7.161 11 C -0.148 4.148 12 C 0.011 3.989 13 C -0.188 4.188 14 C 0.543 3.457 15 O -0.571 6.571 16 N -0.695 5.695 17 C 0.267 3.733 18 C -0.553 4.553 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.984 3.016 23 H -0.249 1.249 24 H -0.281 1.281 25 H -0.282 1.282 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.199 0.801 32 H 0.193 0.807 33 H 0.409 0.591 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.975 -19.527 0.012 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.196 6.196 4 C 0.181 3.819 5 N -0.242 5.242 6 C -0.054 4.054 7 C 0.476 3.524 8 F -0.151 7.151 9 F -0.145 7.145 10 F -0.143 7.143 11 C -0.168 4.168 12 C -0.015 4.015 13 C -0.195 4.195 14 C 0.329 3.671 15 O -0.452 6.452 16 N -0.346 5.346 17 C 0.144 3.856 18 C -0.591 4.591 19 H 0.108 0.892 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.808 3.192 23 H -0.172 1.172 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.216 0.784 32 H 0.210 0.790 33 H 0.246 0.754 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.345 -20.175 0.013 23.146 hybrid contribution 0.436 1.244 0.001 1.318 sum 11.782 -18.931 0.014 22.298 Atomic orbital electron populations 1.21822 0.91499 1.04253 1.02883 1.22986 0.96420 0.79738 1.02935 1.86600 1.15482 1.32032 1.85515 1.19706 0.84638 0.88142 0.89368 1.66851 1.05307 1.32891 1.19189 1.21126 0.89875 0.94130 1.00288 1.17649 0.78080 0.82254 0.74411 1.93228 1.72963 1.53245 1.95643 1.93265 1.78539 1.96502 1.46166 1.93264 1.69360 1.96423 1.55215 1.21995 1.04213 0.89421 1.01208 1.22120 0.89083 1.02086 0.88209 1.20367 0.95819 0.91387 1.11914 1.18264 0.87708 0.83640 0.77486 1.90791 1.16474 1.86513 1.51389 1.46030 1.11313 1.04903 1.72333 1.18618 0.89853 0.82606 0.94478 1.21645 0.94393 0.90335 1.52750 0.89242 1.26055 0.96175 1.03440 0.93894 1.70150 1.10446 1.26379 1.50040 0.85113 0.79246 0.77403 0.77476 1.17201 1.20729 1.20736 0.92444 0.92450 0.87157 0.90846 0.90855 0.78380 0.79042 0.75358 0.99101 0.99108 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 10.28 71.98 0.74 -2.50 16 2 C 0.05 1.37 6.03 71.98 0.43 1.81 16 3 O -0.29 -10.17 8.22 -66.40 -0.55 -10.71 16 4 C 0.36 11.47 7.51 85.13 0.64 12.11 16 5 N -0.52 -13.82 8.57 -296.05 -2.54 -16.36 16 6 C 0.08 1.78 6.27 42.58 0.27 2.04 16 7 C 0.53 9.72 3.31 71.24 0.24 9.95 16 8 F -0.17 -3.60 16.84 44.97 0.76 -2.84 16 9 F -0.16 -2.80 17.28 44.97 0.78 -2.03 16 10 F -0.16 -2.67 17.16 44.97 0.77 -1.89 16 11 C -0.15 -2.34 9.57 22.32 0.21 -2.13 16 12 C 0.01 0.21 9.64 22.72 0.22 0.43 16 13 C -0.19 -5.81 5.90 -19.91 -0.12 -5.93 16 14 C 0.54 22.35 7.77 86.69 0.67 23.03 16 15 O -0.57 -29.13 15.19 16.81 0.26 -28.87 16 16 N -0.69 -28.23 5.50 -470.03 -2.59 -30.81 16 17 C 0.27 14.22 5.43 85.63 0.46 14.68 16 18 C -0.55 -28.80 9.28 25.60 0.24 -28.56 16 19 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 20 C 0.00 0.21 5.46 84.66 0.46 0.68 16 21 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 22 Si 0.98 40.87 29.54 68.60 2.03 42.89 16 23 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 30 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 31 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.19 2.51 6.52 -2.91 -0.02 2.49 16 33 H 0.41 12.79 6.42 -92.70 -0.60 12.19 16 34 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 36 H 0.27 14.82 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.73 333.17 4.23 -69.50 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.55 Total: 10.37 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 4.47 Total: 25.61 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -4.84 Total: -102.03 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.29 Total: -39.58 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 2.31 Total: -6.77 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -73.73 4.23 -69.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.016 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds