Wall clock time and date at job start Tue Mar 31 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 119.99614 * 2 1 4 4 C 1.50707 * 109.46608 * 269.99910 * 3 2 1 5 5 H 1.07996 * 120.00392 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99565 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99858 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99924 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46947 * 90.00084 * 8 6 4 10 10 H 1.48497 * 109.47509 * 210.00552 * 8 6 4 11 11 H 1.48510 * 109.47222 * 330.00462 * 8 6 4 12 12 C 1.34775 * 120.00355 * 180.02562 * 2 1 3 13 13 O 1.21549 * 120.00084 * 182.06438 * 12 2 1 14 14 C 1.47922 * 119.99871 * 2.05679 * 12 2 1 15 15 C 1.39464 * 119.65686 * 172.78749 * 14 12 2 16 16 C 1.38322 * 119.13313 * 179.97438 * 15 14 12 17 17 C 1.39233 * 118.44607 * 359.97438 * 16 15 14 18 18 O 1.35725 * 120.38192 * 180.02562 * 17 16 15 19 19 C 1.42900 * 116.99868 * 179.97438 * 18 17 16 20 20 C 1.52994 * 109.46967 * 180.02562 * 19 18 17 21 21 F 1.39895 * 109.47260 * 60.00287 * 20 19 18 22 22 F 1.39901 * 109.46990 * 179.97438 * 20 19 18 23 23 F 1.39902 * 109.47223 * 299.99952 * 20 19 18 24 24 C 1.39240 * 119.23277 * 0.02562 * 17 16 15 25 25 N 1.31375 * 120.80625 * 359.97438 * 24 17 16 26 26 H 1.09005 * 109.46866 * 263.77041 * 1 2 3 27 27 H 1.08994 * 109.47615 * 23.76662 * 1 2 3 28 28 H 1.09003 * 109.46982 * 143.77406 * 1 2 3 29 29 H 1.08993 * 109.47066 * 29.99799 * 3 2 1 30 30 H 1.08992 * 109.46924 * 150.00522 * 3 2 1 31 31 H 0.97007 * 119.99864 * 179.97438 * 7 6 4 32 32 H 1.08001 * 120.43564 * 0.24712 * 15 14 12 33 33 H 1.07999 * 120.77801 * 180.02562 * 16 15 14 34 34 H 1.09009 * 109.47084 * 300.00473 * 19 18 17 35 35 H 1.08999 * 109.46854 * 59.99890 * 19 18 17 36 36 H 1.07997 * 119.59309 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2418 6 6 3.1258 2.8781 -1.6729 7 7 3.5531 3.6182 -0.6733 8 14 3.4377 3.4169 -3.4340 9 1 2.3075 4.2591 -3.9015 10 1 4.6977 4.2004 -3.4963 11 1 3.5559 2.2195 -4.3045 12 6 2.1389 -1.1671 -0.0005 13 8 3.3538 -1.1674 0.0374 14 6 1.4001 -2.4478 -0.0471 15 6 2.1011 -3.6438 -0.1995 16 6 1.3994 -4.8350 -0.2412 17 6 0.0123 -4.7920 -0.1279 18 8 -0.7151 -5.9373 -0.1632 19 6 -2.1330 -5.8092 -0.0400 20 6 -2.7775 -7.1955 -0.1009 21 9 -2.2878 -7.9838 0.9460 22 9 -4.1656 -7.0702 0.0203 23 9 -2.4684 -7.8002 -1.3240 24 6 -0.6198 -3.5605 0.0220 25 7 0.0763 -2.4468 0.0578 26 1 -0.3633 -0.1115 1.0217 27 1 -0.3634 0.9404 -0.4141 28 1 -0.3633 -0.8290 -0.6073 29 1 1.6083 2.0284 0.5138 30 1 3.1498 1.1385 0.5137 31 1 4.0299 4.4442 -0.8506 32 1 3.1781 -3.6402 -0.2796 33 1 1.9153 -5.7766 -0.3580 34 1 -2.3739 -5.3384 0.9132 35 1 -2.5145 -5.1946 -0.8554 36 1 -1.6954 -3.5203 0.1100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433813523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:37 Heat of formation + Delta-G solvation = -187.835706 kcal Electronic energy + Delta-G solvation = -25880.726088 eV Core-core repulsion = 21336.712360 eV Total energy + Delta-G solvation = -4544.013728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.16914 -48.71293 -48.65624 -42.08371 -40.61000 -39.05863 -36.72637 -34.79080 -33.68554 -32.19734 -30.91218 -29.55644 -27.44790 -25.89511 -25.50543 -24.29153 -23.53036 -21.01316 -20.14249 -19.70919 -19.20032 -18.82620 -18.70429 -18.24513 -17.63455 -17.14982 -16.84928 -16.34762 -16.29363 -15.87419 -15.56307 -15.49770 -15.08513 -15.00274 -14.81793 -14.80083 -14.69755 -14.67895 -14.40113 -14.14896 -13.85647 -13.67801 -13.39387 -13.02013 -12.90404 -12.79629 -12.66537 -12.43723 -12.21590 -11.72514 -11.16810 -10.91696 -10.64641 -10.21133 -9.73764 -9.37914 -8.22879 -6.38464 -0.41149 0.09147 1.08464 1.37245 1.40379 1.50910 1.77632 1.91250 2.23679 2.41580 2.64717 2.76076 2.92057 3.06130 3.13138 3.24895 3.36857 3.66955 3.87665 3.95321 3.97916 4.09714 4.43290 4.62161 4.67107 4.85352 4.85685 5.03438 5.11691 5.21446 5.32002 5.56891 5.79472 5.84975 6.03620 6.53352 6.69601 6.74657 7.22648 7.38177 8.84398 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.002468 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.313728 B =11341.464203 C =11527.506862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.589 5.589 3 C 0.256 3.744 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.971 3.029 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.273 1.273 12 C 0.546 3.454 13 O -0.590 6.590 14 C 0.033 3.967 15 C -0.074 4.074 16 C -0.101 4.101 17 C 0.106 3.894 18 O -0.299 6.299 19 C 0.000 4.000 20 C 0.467 3.533 21 F -0.184 7.184 22 F -0.169 7.169 23 F -0.184 7.184 24 C 0.023 3.977 25 N -0.422 5.422 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.026 0.974 30 H 0.003 0.997 31 H 0.268 0.732 32 H 0.150 0.850 33 H 0.177 0.823 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.331 -23.117 1.401 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.318 5.318 3 C 0.135 3.865 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.795 3.205 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.197 1.197 12 C 0.334 3.666 13 O -0.471 6.471 14 C -0.104 4.104 15 C -0.095 4.095 16 C -0.127 4.127 17 C 0.059 3.941 18 O -0.211 6.211 19 C -0.076 4.076 20 C 0.413 3.587 21 F -0.166 7.166 22 F -0.150 7.150 23 F -0.166 7.166 24 C -0.139 4.139 25 N -0.135 5.135 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.044 0.956 30 H 0.021 0.979 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.194 0.806 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.996 -22.345 1.554 28.117 hybrid contribution 0.750 -0.174 -0.671 1.021 sum -16.245 -22.519 0.884 27.782 Atomic orbital electron populations 1.22353 0.77204 1.03307 1.02752 1.48093 1.09003 1.06016 1.68653 1.18888 0.91231 0.79946 0.96423 1.21661 1.37184 1.06789 0.92731 0.92951 1.25882 0.94719 0.96250 1.02232 1.70054 1.38768 1.14768 1.33121 0.85366 0.78155 0.78220 0.78768 1.18750 1.20410 1.19734 1.18433 0.86520 0.84202 0.77482 1.90711 1.15108 1.87611 1.53676 1.20829 0.90550 0.93264 1.05721 1.21970 1.02426 0.90534 0.94571 1.21093 0.90936 0.99616 1.01063 1.20143 0.91966 0.85992 0.96043 1.85977 1.18332 1.28934 1.87811 1.24287 0.79990 0.92994 1.10287 1.20135 0.76895 0.88050 0.73642 1.93228 1.87621 1.77396 1.58329 1.93250 1.30026 1.96023 1.95709 1.93231 1.92732 1.85763 1.44874 1.23752 1.02532 0.85872 1.01730 1.67921 1.06331 1.29900 1.09311 0.91914 0.92697 0.86939 0.95574 0.97932 0.92265 0.83205 0.80572 0.83789 0.83855 0.77553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.98 9.30 127.77 1.19 4.17 16 2 N -0.59 -27.23 2.86 -854.47 -2.44 -29.67 16 3 C 0.26 14.41 5.15 85.63 0.44 14.85 16 4 C -0.55 -32.29 9.39 25.60 0.24 -32.05 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.48 5.46 84.66 0.46 0.95 16 7 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 8 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 9 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.55 24.73 7.65 86.81 0.66 25.39 16 13 O -0.59 -31.58 15.90 -3.87 -0.06 -31.64 16 14 C 0.03 1.08 6.62 41.86 0.28 1.35 16 15 C -0.07 -1.97 9.62 22.59 0.22 -1.76 16 16 C -0.10 -1.87 10.12 22.53 0.23 -1.65 16 17 C 0.11 1.67 6.72 22.75 0.15 1.82 16 18 O -0.30 -3.67 10.03 -90.48 -0.91 -4.58 16 19 C 0.00 0.00 4.70 71.98 0.34 0.34 16 20 C 0.47 4.59 3.32 71.98 0.24 4.83 16 21 F -0.18 -2.50 17.26 44.97 0.78 -1.72 16 22 F -0.17 -1.63 17.32 44.97 0.78 -0.85 16 23 F -0.18 -2.53 17.26 44.97 0.78 -1.76 16 24 C 0.02 0.36 10.21 85.00 0.87 1.23 16 25 N -0.42 -10.88 6.02 -184.53 -1.11 -11.99 16 26 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.05 1.94 8.02 -2.39 -0.02 1.92 16 28 H 0.11 3.43 5.26 -2.81 -0.01 3.42 16 29 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 30 H 0.00 0.16 7.39 -2.39 -0.02 0.15 16 31 H 0.27 15.30 8.31 -92.70 -0.77 14.52 16 32 H 0.15 4.15 7.65 -2.91 -0.02 4.13 16 33 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.14 0.02 7.67 -2.38 -0.02 0.00 16 35 H 0.14 0.05 7.67 -2.39 -0.02 0.03 16 36 H 0.21 1.27 6.31 -2.91 -0.02 1.25 16 Total: -1.00 -78.86 329.42 6.57 -72.28 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: 1.14 Total: -0.45 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 5.32 Total: 19.48 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -3.27 Total: -98.09 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.97 Total: -36.21 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 2.33 Total: -4.33 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -78.86 6.57 -72.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433813523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.553 kcal (2) G-P(sol) polarization free energy of solvation -78.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds