Wall clock time and date at job start Tue Mar 31 2020 11:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99919 * 2 1 4 4 C 1.38615 * 120.01585 * 0.02562 * 3 2 1 5 5 C 1.38797 * 119.86717 * 180.02562 * 4 3 2 6 6 N 1.39668 * 120.04517 * 180.02562 * 5 4 3 7 7 C 1.46496 * 120.00029 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46979 * 180.02562 * 7 6 5 9 9 O 1.21291 * 120.00176 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99928 * 180.02562 * 8 7 6 11 11 C 1.37093 * 119.99672 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00474 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99675 * 179.97438 * 11 10 8 14 14 N 1.31416 * 120.00047 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00293 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46737 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47292 * 119.99929 * 15 13 11 18 18 H 1.48503 * 109.47383 * 240.00337 * 15 13 11 19 19 C 1.38975 * 119.90816 * 0.02562 * 5 4 3 20 20 C 1.38111 * 120.03354 * 0.27766 * 19 5 4 21 21 C 1.38214 * 120.13263 * 359.44277 * 20 19 5 22 22 C 1.50703 * 119.95934 * 180.28022 * 21 20 19 23 23 F 1.39901 * 109.46442 * 0.27941 * 22 21 20 24 24 F 1.39898 * 109.47064 * 120.27148 * 22 21 20 25 25 F 1.39892 * 109.47234 * 240.27700 * 22 21 20 26 26 H 1.09000 * 109.47259 * 300.00158 * 1 2 3 27 27 H 1.09001 * 109.47441 * 59.99728 * 1 2 3 28 28 H 1.08997 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.06775 * 0.04385 * 4 3 2 30 30 H 0.97005 * 119.99437 * 359.97438 * 6 5 4 31 31 H 1.08996 * 109.47298 * 300.00457 * 7 6 5 32 32 H 1.09000 * 109.46568 * 60.01041 * 7 6 5 33 33 H 0.96995 * 119.99668 * 359.97438 * 10 8 7 34 34 H 0.96993 * 120.00235 * 179.97438 * 14 13 11 35 35 H 1.08002 * 119.97864 * 179.97438 * 19 5 4 36 36 H 1.08001 * 119.93263 * 179.70631 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3736 0.0005 5 6 1.9247 3.6087 0.0000 6 7 1.1679 4.7826 0.0011 7 6 1.8374 6.0856 0.0011 8 6 0.8031 7.1817 0.0030 9 8 -0.3771 6.9020 0.0047 10 7 1.1896 8.4730 0.0028 11 6 0.2487 9.4700 0.0050 12 1 -0.8022 9.2209 0.0066 13 6 0.6472 10.8012 0.0054 14 7 1.9259 11.1044 0.0030 15 14 -0.6347 12.1599 0.0077 16 1 -1.9928 11.5590 0.0096 17 1 -0.4638 12.9996 1.2205 18 1 -0.4668 13.0011 -1.2045 19 6 3.3128 3.6756 -0.0016 20 6 4.0608 2.5146 -0.0085 21 6 3.4318 1.2839 -0.0021 22 6 4.2519 0.0196 -0.0033 23 9 5.6122 0.3463 -0.0048 24 9 3.9538 -0.7306 1.1393 25 9 3.9511 -0.7304 -1.1452 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2128 2.3187 0.0017 30 1 0.1990 4.7350 0.0018 31 1 2.4612 6.1736 0.8905 32 1 2.4596 6.1743 -0.8895 33 1 2.1334 8.6966 0.0018 34 1 2.2040 12.0336 0.0029 35 1 3.8068 4.6360 -0.0025 36 1 5.1395 2.5686 -0.0145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447886509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:08 Heat of formation + Delta-G solvation = -199.380412 kcal Electronic energy + Delta-G solvation = -25886.318355 eV Core-core repulsion = 21341.804011 eV Total energy + Delta-G solvation = -4544.514344 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.99076 -47.54964 -47.42111 -40.43191 -38.79847 -37.81676 -35.24368 -34.09721 -31.56076 -30.96539 -30.30978 -27.61295 -27.46458 -25.12021 -24.30389 -22.51540 -21.51949 -19.62852 -18.83492 -18.38543 -18.33327 -18.12580 -17.61180 -16.92549 -16.01898 -15.95902 -15.16251 -15.06263 -14.96088 -14.73870 -14.42656 -14.34879 -14.34575 -13.91233 -13.84136 -13.66237 -13.63200 -13.41744 -13.22468 -13.04526 -12.44718 -12.35516 -12.13195 -11.71896 -11.48418 -11.39800 -11.29804 -11.20314 -10.48806 -10.40692 -10.16270 -9.74391 -8.76468 -8.60463 -8.21146 -7.61379 -6.61656 -4.03819 1.16299 1.31605 2.83183 2.98035 3.03018 3.16334 3.21901 3.35101 3.51744 3.62017 3.94945 4.04040 4.16852 4.60106 4.67361 4.74618 4.87486 4.98227 5.05287 5.06133 5.17576 5.31200 5.38589 5.41367 5.58651 5.71575 5.78872 5.96579 6.13870 6.20041 6.42556 7.01347 7.21283 7.36978 7.73959 7.84499 8.33694 8.94771 9.27409 9.74981 10.55133 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.002423 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.188092 B =11552.625959 C =12346.716541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.223 3.777 4 C -0.295 4.295 5 C 0.292 3.708 6 N -0.710 5.710 7 C 0.107 3.893 8 C 0.426 3.574 9 O -0.596 6.596 10 N -0.547 5.547 11 C -0.306 4.306 12 H 0.106 0.894 13 C 0.027 3.973 14 N -0.894 5.894 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.237 4.237 20 C 0.011 3.989 21 C -0.291 4.291 22 C 0.524 3.476 23 F -0.185 7.185 24 F -0.181 7.181 25 F -0.181 7.181 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.414 0.586 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.396 0.604 34 H 0.275 0.725 35 H 0.136 0.864 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 -18.526 -0.025 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.176 3.824 4 C -0.319 4.319 5 C 0.182 3.818 6 N -0.336 5.336 7 C -0.021 4.021 8 C 0.212 3.788 9 O -0.482 6.482 10 N -0.182 5.182 11 C -0.435 4.435 12 H 0.124 0.876 13 C -0.176 4.176 14 N -0.534 5.534 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.260 4.260 20 C -0.008 4.008 21 C -0.295 4.295 22 C 0.470 3.530 23 F -0.166 7.166 24 F -0.162 7.162 25 F -0.162 7.162 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.154 0.846 30 H 0.253 0.747 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.776 -18.490 -0.025 18.872 hybrid contribution -0.444 0.888 0.000 0.993 sum 3.332 -17.602 -0.024 17.915 Atomic orbital electron populations 1.23131 0.77564 1.04143 1.01972 1.86114 1.22192 1.26380 1.87607 1.18143 0.90085 0.84303 0.89893 1.20468 1.00155 0.90224 1.21038 1.17726 0.90986 0.85905 0.87200 1.44745 1.09594 1.01929 1.77341 1.21083 0.95493 0.83002 1.02562 1.19657 0.89283 0.83921 0.85977 1.90512 1.17984 1.82446 1.57283 1.41798 1.10060 1.03877 1.62473 1.19778 0.90801 0.84648 1.48310 0.87623 1.25332 0.97046 0.98628 0.96616 1.69608 1.14449 1.20151 1.49158 0.85753 0.80386 0.80032 0.77918 1.19110 1.20529 1.20524 1.20597 0.91602 0.99033 1.14736 1.20512 1.00103 0.89558 0.90608 1.18880 0.90843 0.93007 1.26778 1.17960 0.77232 0.84194 0.73633 1.93123 1.34589 1.92602 1.96330 1.93186 1.93044 1.78724 1.51241 1.93184 1.92983 1.78742 1.51293 0.92134 0.92140 0.88042 0.84608 0.74658 0.90009 0.90007 0.77072 0.91539 0.84667 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.73 9.39 -19.43 -0.18 -3.91 16 3 C 0.22 2.87 6.56 -39.24 -0.26 2.61 16 4 C -0.29 -3.68 8.88 -39.24 -0.35 -4.03 16 5 C 0.29 3.90 6.65 -83.81 -0.56 3.35 16 6 N -0.71 -10.53 5.70 -59.83 -0.34 -10.87 16 7 C 0.11 1.67 5.39 -5.19 -0.03 1.64 16 8 C 0.43 9.13 7.85 -10.98 -0.09 9.04 16 9 O -0.60 -14.74 15.24 5.55 0.08 -14.65 16 10 N -0.55 -12.79 5.29 -10.96 -0.06 -12.85 16 11 C -0.31 -8.02 9.68 -14.93 -0.14 -8.16 16 12 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 13 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 14 N -0.89 -22.93 13.05 55.50 0.72 -22.21 16 15 Si 0.93 19.92 29.55 -169.99 -5.02 14.90 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 C -0.24 -2.88 9.31 -39.35 -0.37 -3.24 16 20 C 0.01 0.13 9.42 -39.64 -0.37 -0.24 16 21 C -0.29 -3.73 5.39 -104.43 -0.56 -4.29 16 22 C 0.52 6.71 2.99 36.01 0.11 6.82 16 23 F -0.18 -2.22 15.97 2.25 0.04 -2.19 16 24 F -0.18 -2.42 16.94 2.25 0.04 -2.39 16 25 F -0.18 -2.42 16.94 2.25 0.04 -2.38 16 26 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.14 1.48 6.30 -52.49 -0.33 1.14 16 30 H 0.41 6.55 7.45 -40.82 -0.30 6.25 16 31 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 32 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 33 H 0.40 8.74 7.90 -40.82 -0.32 8.42 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.14 1.45 6.73 -52.49 -0.35 1.10 16 36 H 0.14 1.32 7.15 -52.49 -0.38 0.95 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -29.48 327.16 -4.71 -34.19 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -3.24 Total: 12.14 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -1.72 Total: 5.28 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.33 Total: -45.93 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.10 Total: -18.56 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.11 Total: -6.96 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.48 -4.71 -34.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447886509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.186 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds