Wall clock time and date at job start Tue Mar 31 2020 11:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42901 * 114.00024 * 2 1 4 4 C 1.53005 * 109.47361 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47434 * 64.99571 * 4 3 2 6 6 C 1.36875 * 120.00041 * 45.32626 * 5 4 3 7 7 H 1.08007 * 119.99191 * 36.53706 * 6 5 4 8 8 C 1.39039 * 120.00271 * 216.80896 * 6 5 4 9 9 N 1.31358 * 120.00206 * 21.09032 * 8 6 5 10 10 Si 1.86805 * 119.99978 * 201.09372 * 8 6 5 11 11 H 1.48493 * 109.47259 * 90.00043 * 10 8 6 12 12 H 1.48507 * 109.46875 * 210.00193 * 10 8 6 13 13 H 1.48497 * 109.47168 * 329.99663 * 10 8 6 14 14 C 1.34774 * 120.00294 * 225.33450 * 5 4 3 15 15 O 1.21590 * 120.00312 * 183.68687 * 14 5 4 16 16 C 1.47730 * 119.99628 * 3.68157 * 14 5 4 17 17 C 1.40092 * 120.56408 * 224.43771 * 16 14 5 18 18 C 1.38336 * 118.28234 * 179.97438 * 17 16 14 19 19 C 1.38364 * 119.30819 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.44881 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.47104 * 90.00053 * 20 19 18 22 22 F 1.39904 * 109.47003 * 210.00082 * 20 19 18 23 23 F 1.39902 * 109.47217 * 329.99721 * 20 19 18 24 24 N 1.31936 * 121.10055 * 0.02562 * 19 18 17 25 25 C 1.31684 * 121.87830 * 359.72253 * 24 19 18 26 26 H 1.09001 * 109.47350 * 300.00413 * 1 2 3 27 27 H 1.09005 * 109.47338 * 60.00052 * 1 2 3 28 28 H 1.09001 * 109.47445 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47465 * 59.99630 * 3 2 1 30 30 H 1.09007 * 109.46955 * 299.99846 * 3 2 1 31 31 H 1.09006 * 109.46567 * 304.99634 * 4 3 2 32 32 H 1.09000 * 109.47190 * 184.99700 * 4 3 2 33 33 H 0.96997 * 120.00429 * 184.93968 * 9 8 6 34 34 H 1.07999 * 120.85796 * 359.97438 * 17 16 14 35 35 H 1.07999 * 120.34054 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.71929 * 180.26933 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 3.4489 0.9812 -2.4452 7 1 3.2179 2.0252 -2.5979 8 6 3.2060 0.0600 -3.4579 9 7 3.0781 -1.2151 -3.1691 10 14 3.0615 0.6355 -5.2292 11 1 4.4016 0.6112 -5.8684 12 1 2.1434 -0.2670 -5.9695 13 1 2.5244 2.0196 -5.2577 14 6 4.8994 -0.4168 -1.2303 15 8 5.3141 -0.8853 -2.2728 16 6 5.4080 -0.9230 0.0610 17 6 6.7787 -1.1422 0.2502 18 6 7.2032 -1.6165 1.4784 19 6 6.2699 -1.8564 2.4713 20 6 6.7289 -2.3736 3.8103 21 9 7.0106 -1.2948 4.6553 22 9 5.7197 -3.1592 4.3776 23 9 7.8823 -3.1471 3.6411 24 7 4.9847 -1.6408 2.2650 25 6 4.5317 -1.1854 1.1154 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6885 1.8464 0.8899 30 1 1.6885 1.8464 -0.8901 31 1 3.8514 0.5683 0.8410 32 1 3.9785 2.1766 0.0889 33 1 2.9803 -1.8663 -3.8812 34 1 7.4856 -0.9459 -0.5423 35 1 8.2523 -1.7975 1.6603 36 1 3.4727 -1.0174 0.9860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457180820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:21 Heat of formation + Delta-G solvation = -160.019104 kcal Electronic energy + Delta-G solvation = -27409.552595 eV Core-core repulsion = 22866.745085 eV Total energy + Delta-G solvation = -4542.807509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08646 -47.64125 -47.51918 -40.31940 -38.28697 -37.02457 -34.36900 -32.72185 -32.23184 -31.43990 -28.89495 -27.06491 -25.79639 -24.86645 -23.71260 -22.73535 -21.72404 -19.91516 -18.57073 -18.46691 -18.38971 -17.31229 -16.42459 -16.20738 -15.74549 -15.14943 -14.86521 -14.73231 -14.50355 -14.42580 -14.33252 -14.05967 -13.99365 -13.76195 -13.70260 -13.65314 -13.49281 -13.11009 -12.91610 -12.48264 -12.08048 -11.84212 -11.58573 -11.41987 -11.09464 -10.92292 -10.68765 -10.44179 -10.25955 -9.73669 -9.61994 -9.10697 -9.00872 -8.87216 -8.26008 -7.28708 -6.22579 -3.93546 0.77370 1.34985 2.58074 3.24981 3.31707 3.35337 3.48514 3.62305 4.03295 4.14903 4.29443 4.37183 4.50746 4.63434 4.83789 5.09571 5.15330 5.16712 5.31982 5.49494 5.60550 5.68963 5.76342 5.84393 5.90078 5.92081 6.07933 6.10926 6.20994 6.39021 6.46857 6.68677 7.42550 7.76551 7.82385 8.03848 8.83015 8.98205 9.44949 10.08160 10.81809 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.004253 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.448382 B = 6581.477651 C = 7508.466331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.370 6.370 3 C 0.061 3.939 4 C 0.082 3.918 5 N -0.425 5.425 6 C -0.333 4.333 7 H 0.085 0.915 8 C 0.069 3.931 9 N -0.796 5.796 10 Si 0.907 3.093 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.492 3.508 15 O -0.525 6.525 16 C -0.100 4.100 17 C -0.051 4.051 18 C -0.125 4.125 19 C 0.014 3.986 20 C 0.526 3.474 21 F -0.175 7.175 22 F -0.167 7.167 23 F -0.175 7.175 24 N -0.448 5.448 25 C 0.117 3.883 26 H 0.028 0.972 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.267 0.733 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 1.990 10.787 11.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.288 6.288 3 C -0.016 4.016 4 C -0.042 4.042 5 N -0.145 5.145 6 C -0.460 4.460 7 H 0.102 0.898 8 C -0.144 4.144 9 N -0.429 5.429 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.198 1.198 14 C 0.279 3.721 15 O -0.403 6.403 16 C -0.106 4.106 17 C -0.077 4.077 18 C -0.146 4.146 19 C -0.124 4.124 20 C 0.470 3.530 21 F -0.157 7.157 22 F -0.148 7.148 23 F -0.157 7.157 24 N -0.156 5.156 25 C -0.043 4.043 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.084 1.226 10.893 11.158 hybrid contribution 0.266 0.437 -1.236 1.338 sum 2.350 1.663 9.657 10.077 Atomic orbital electron populations 1.22575 0.82287 1.01980 0.98860 1.87954 1.18485 1.27254 1.95096 1.22714 0.93876 0.85400 0.99599 1.22061 0.93134 0.98799 0.90192 1.43141 1.33035 1.33645 1.04673 1.18975 1.43023 0.93336 0.90618 0.89779 1.25102 0.94684 0.94830 0.99778 1.69918 1.37806 1.01610 1.33548 0.86290 0.78109 0.78309 0.83951 1.20279 1.21263 1.19832 1.17319 0.82790 0.85559 0.86390 1.90644 1.59056 1.58308 1.32330 1.21944 0.94644 0.96808 0.97239 1.21626 0.95254 0.94651 0.96194 1.21663 1.00628 0.98976 0.93311 1.20806 0.92122 1.05865 0.93648 1.17911 0.74843 0.75514 0.84705 1.93212 1.93650 1.55513 1.73291 1.93216 1.60212 1.75018 1.86366 1.93184 1.50924 1.76004 1.95576 1.67146 1.13777 1.10138 1.24531 1.23396 1.01412 0.93151 0.86291 0.95314 0.94410 0.90385 0.94344 0.91807 0.90264 0.91767 0.92296 0.83302 0.83769 0.79782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 11.01 101.05 1.11 1.72 16 2 O -0.37 -7.10 9.76 -35.23 -0.34 -7.45 16 3 C 0.06 1.06 5.79 37.16 0.22 1.27 16 4 C 0.08 1.50 5.67 -4.04 -0.02 1.48 16 5 N -0.42 -9.88 2.78 -115.92 -0.32 -10.20 16 6 C -0.33 -8.40 7.88 -15.00 -0.12 -8.52 16 7 H 0.08 2.01 7.85 -52.48 -0.41 1.60 16 8 C 0.07 1.83 4.30 -17.46 -0.07 1.76 16 9 N -0.80 -22.49 11.35 55.50 0.63 -21.86 16 10 Si 0.91 20.67 29.61 -169.99 -5.03 15.63 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 14 C 0.49 11.98 6.52 -12.38 -0.08 11.90 16 15 O -0.52 -14.86 14.34 5.29 0.08 -14.79 16 16 C -0.10 -2.00 5.22 -104.82 -0.55 -2.55 16 17 C -0.05 -0.86 9.85 -38.85 -0.38 -1.24 16 18 C -0.13 -1.82 9.41 -39.50 -0.37 -2.20 16 19 C 0.01 0.23 6.30 -82.50 -0.52 -0.29 16 20 C 0.53 7.47 3.43 36.01 0.12 7.60 16 21 F -0.18 -2.42 17.30 2.25 0.04 -2.38 16 22 F -0.17 -2.53 17.03 2.25 0.04 -2.49 16 23 F -0.18 -2.27 16.43 2.25 0.04 -2.24 16 24 N -0.45 -7.97 9.94 -9.12 -0.09 -8.07 16 25 C 0.12 2.20 8.54 -17.11 -0.15 2.05 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.16 7.16 -51.92 -0.37 0.79 16 31 H 0.08 1.39 3.60 -51.93 -0.19 1.20 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.14 1.62 7.59 -52.49 -0.40 1.22 16 36 H 0.19 3.58 5.74 -52.49 -0.30 3.28 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -31.01 322.79 -4.26 -35.27 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -3.34 Total: 0.73 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -0.81 Total: 12.97 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.22 Total: -40.13 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.27 Total: -22.23 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.11 Total: -7.11 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.01 -4.26 -35.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.749 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds